View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21468_high_4 (Length: 331)
Name: NF21468_high_4
Description: NF21468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21468_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 39610672 - 39610365
Alignment:
| Q |
13 |
cactttgcctccgcttttaaaaaactcatccatttctgcttcagcttgttccatattttttctctctcagcatctggagttcagaaacaccacatgttaa |
112 |
Q |
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| T |
39610672 |
cactttgcctccgcttttaaaaaactcatccatttctgcttcagcttgttccatattttttctctctcagcatctggagttcagaaacaccacatgttaa |
39610573 |
T |
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| Q |
113 |
ctaaattatgtaaaagatggtacagtactgattccacatagcaacaagttcagtgtaatcctttcaatactacaagatctgaagg-nnnnnnnnntacaa |
211 |
Q |
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| T |
39610572 |
ctaaattgtgtaaaagatggtacagtactgattccacatagcaacaagttcagtgtaatcctttcaatactacaagatctgaaggaaaaaaaaaatacaa |
39610473 |
T |
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| Q |
212 |
acttaggcttttatacgttgcaggaaaagaaatcaataatgaataccttgacgcttccgagcttcttcttctttgagcagtttttgttttctctcctctt |
311 |
Q |
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| T |
39610472 |
acttaggcttttatacgttgcaggaaaagaaatcaataatgaataccttgacgcttccgagcttcttcttctttgagcagtttttgttttctctcctctt |
39610373 |
T |
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| Q |
312 |
ccagctca |
319 |
Q |
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|||||||| |
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| T |
39610372 |
ccagctca |
39610365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 40158945 - 40158993
Alignment:
| Q |
70 |
ttttctctctcagcatctggagttcagaaacaccacatgttaactaaat |
118 |
Q |
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|||| ||||||||| |||| |||||||||||||| |||||||| ||||| |
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| T |
40158945 |
ttttttctctcagcctctgcagttcagaaacaccgcatgttaattaaat |
40158993 |
T |
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