View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21469_high_10 (Length: 363)

Name: NF21469_high_10
Description: NF21469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21469_high_10
NF21469_high_10
[»] chr2 (16 HSPs)
chr2 (205-358)||(35348491-35348644)
chr2 (1-86)||(35348304-35348389)
chr2 (196-308)||(35343846-35343958)
chr2 (3-82)||(35355589-35355668)
chr2 (3-82)||(35368116-35368195)
chr2 (4-86)||(35343616-35343698)
chr2 (86-152)||(35348424-35348490)
chr2 (16-86)||(35371482-35371552)
chr2 (1-77)||(35345987-35346063)
chr2 (2-65)||(35374296-35374359)
chr2 (3-78)||(35351004-35351079)
chr2 (3-67)||(35364256-35364320)
chr2 (95-155)||(35371372-35371432)
chr2 (4-82)||(35340577-35340656)
chr2 (9-82)||(35335492-35335565)
chr2 (103-157)||(35355370-35355425)
[»] chr4 (3 HSPs)
chr4 (1-55)||(9063700-9063754)
chr4 (1-55)||(9072766-9072820)
chr4 (3-55)||(9060406-9060458)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 9e-58; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 205 - 358
Target Start/End: Original strand, 35348491 - 35348644
Alignment:
Q  205 aaagagtgttaagttttgaacaatgatacttggcacgaaaacaatttcgcacaaaacacacgagttagtgtgtagcccagttaggttccattttaattct 304  Q
    |||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||| |||||| || ||||||||||||||||||||    
T  35348491 aaagagtgttaagttttgaacaatgatacttggcacgacaagaatctcgcacaaaacacacgagttagtatgtagcacacttaggttccattttaattct 35348590  T
Q  305 aacttaaaataactcgcctcaagcaatgataggattcgcgacatctgtggtgct 358  Q
    |||| |||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  35348591 aactcaaaataactcgcctcaagcaataataggatttgcgatatctgtggtgct 35348644  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 35348304 - 35348389
Alignment:
Q  1 aaggaaggtgatgatgacgatgacagtggttacgactatgctcccgctgcctaaaactctaatgtgttaacttacattagtcttct 86  Q
    |||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35348304 aaggaaggtgatgatgacgatgatggtggttacgactatgctcccactgcctaaaactctaatgtgttaacttacattagtcttct 35348389  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 196 - 308
Target Start/End: Original strand, 35343846 - 35343958
Alignment:
Q  196 atcaatacgaaagagtgttaagttttgaacaatgatacttggcacgaaaacaatttcgcacaaaacacacgagttagtgtgtagcccagttaggttccat 295  Q
    |||||||| |||||||||||||||||||| ||||||||||||||| |||| ||||||||  ||||||||||||||||| |||||| ||   | |||||||    
T  35343846 atcaatacaaaagagtgttaagttttgaataatgatacttggcacaaaaataatttcgcgtaaaacacacgagttagtatgtagctcacacatgttccat 35343945  T
Q  296 tttaattctaact 308  Q
    |||||||| ||||    
T  35343946 tttaattccaact 35343958  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 35355668 - 35355589
Alignment:
Q  3 ggaaggtgatgatgacgatgacagtggttacgactatgctcccgctgcctaaaactctaatgtgttaacttacattagtc 82  Q
    |||||| ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  35355668 ggaaggcgatgatgacgatgacggtggttatgactatgctcctgctgcctaaaactctaatgtgttaacttacataagtc 35355589  T

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Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 35368195 - 35368116
Alignment:
Q  3 ggaaggtgatgatgacgatgacagtggttacgactatgctcccgctgcctaaaactctaatgtgttaacttacattagtc 82  Q
    |||||| ||||| ||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35368195 ggaaggcgatgacgacgatgacggtggttatgactatgctcccgctgcataaaactctaatgtgttaacttacattagtc 35368116  T

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Target: chr2; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 35343616 - 35343698
Alignment:
Q  4 gaaggtgatgatgacgatgacagtggttacgactatgctcccgctgcctaaaactctaatgtgttaacttacattagtcttct 86  Q
    ||||| ||||||||||||||  ||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||    
T  35343616 gaaggcgatgatgacgatgatggtggttacgactatgctccagccgcctaaaacactaatgtgttaacttacattagtcttct 35343698  T

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Target: chr2; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 35348424 - 35348490
Alignment:
Q  86 tcgtttattgttcgaatttagtacttaactattagtttgttagtgcctgtaaataggctggatgtca 152  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  35348424 tcgtttattgttcgaatttagtacttaactatttgtttgttagtgcctgtaaataggctcgatgtca 35348490  T

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Target: chr2; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 35371552 - 35371482
Alignment:
Q  16 gacgatgacagtggttacgactatgctcccgctgcctaaaactctaatgtgttaacttacattagtcttct 86  Q
    ||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35371552 gacgacgacggtggttatgactatgctcccgctgcctaaaactctaatgtgttaacttacattagtcttct 35371482  T

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Target: chr2; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 35346063 - 35345987
Alignment:
Q  1 aaggaaggtgatgatgacgatgacagtggttacgactatgctcccgctgcctaaaactctaatgtgttaacttacat 77  Q
    |||||||| ||||||||||||||  ||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  35346063 aaggaaggcgatgatgacgatgatggtggttatgactatgctcccgctgcgtaaaactctaatgtgttaacttacat 35345987  T

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Target: chr2; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 35374359 - 35374296
Alignment:
Q  2 aggaaggtgatgatgacgatgacagtggttacgactatgctcccgctgcctaaaactctaatgt 65  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||    
T  35374359 aggaaggtgatgatgacgatgacggtggttatgactatgctcccgctgcataaaactctaatgt 35374296  T

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Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 35351079 - 35351004
Alignment:
Q  3 ggaaggtgatgatgacgatgacagtggttacgactatgctcccgctgcctaaaactctaatgtgttaacttacatt 78  Q
    |||||||||||||||||||||  ||||||| ||||| ||||||||||| ||| ||||||||||| |||||||||||    
T  35351079 ggaaggtgatgatgacgatgatggtggttatgactacgctcccgctgcataagactctaatgtgctaacttacatt 35351004  T

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Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 35364320 - 35364256
Alignment:
Q  3 ggaaggtgatgatgacgatgacagtggttacgactatgctcccgctgcctaaaactctaatgtgt 67  Q
    |||||| ||||| ||||||||| ||||||| ||||||||||||||||| ||||||||||||||||    
T  35364320 ggaaggcgatgacgacgatgacggtggttatgactatgctcccgctgcataaaactctaatgtgt 35364256  T

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Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 35371432 - 35371372
Alignment:
Q  95 gttcgaatttagtacttaactattagtttgttagtgcctgtaaataggctggatgtcatta 155  Q
    ||||||| ||||||||||||||||||||||||| ||| | |||||||||| ||||||||||    
T  35371432 gttcgaaattagtacttaactattagtttgttattgcttataaataggctagatgtcatta 35371372  T

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Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 35340656 - 35340577
Alignment:
Q  4 gaaggtgatgatgacgatgacagtggttacgactatgctcccgctgcct-aaaactctaatgtgttaacttacattagtc 82  Q
    ||||||||||||||||| ||  ||||||| ||||||||||| ||||| | ||||||||||||||| |||||| |||||||    
T  35340656 gaaggtgatgatgacgacgatggtggttatgactatgctccagctgcataaaaactctaatgtgtgaacttatattagtc 35340577  T

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Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 35335565 - 35335492
Alignment:
Q  9 tgatgatgacgatgacagtggttacgactatgctcccgctgcctaaaactctaatgtgttaacttacattagtc 82  Q
    ||||||||| || ||| ||||||| ||||||||||||||||| ||||    |||||||||||||||||||||||    
T  35335565 tgatgatgatgacgacggtggttatgactatgctcccgctgcataaagtagtaatgtgttaacttacattagtc 35335492  T

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Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 157
Target Start/End: Complemental strand, 35355425 - 35355370
Alignment:
Q  103 ttagtacttaactattagtttgttagtgcct-gtaaataggctggatgtcattata 157  Q
    |||||||||||||||||||||||||||||||  | |||||||| ||||||||||||    
T  35355425 ttagtacttaactattagtttgttagtgcctatttaataggctcgatgtcattata 35355370  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 9063700 - 9063754
Alignment:
Q  1 aaggaaggtgatgatgacgatgacagtggttacgactatgctcccgctgcctaaa 55  Q
    |||||||||||||||||||||||  ||||||| ||||||||||||||||| ||||    
T  9063700 aaggaaggtgatgatgacgatgatggtggttatgactatgctcccgctgcttaaa 9063754  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 9072766 - 9072820
Alignment:
Q  1 aaggaaggtgatgatgacgatgacagtggttacgactatgctcccgctgcctaaa 55  Q
    |||||||||||||||||||||||  |||| || ||||||||||| ||||| ||||    
T  9072766 aaggaaggtgatgatgacgatgatggtggctatgactatgctcctgctgcttaaa 9072820  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 9060406 - 9060458
Alignment:
Q  3 ggaaggtgatgatgacgatgacagtggttacgactatgctcccgctgcctaaa 55  Q
    |||||||||||||||||||||  |||| || || |||||||||||||| ||||    
T  9060406 ggaaggtgatgatgacgatgatggtggatatgattatgctcccgctgcttaaa 9060458  T

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