View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21469_high_11 (Length: 357)
Name: NF21469_high_11
Description: NF21469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21469_high_11 |
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| [»] chr2 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 2 - 357
Target Start/End: Original strand, 19102372 - 19102727
Alignment:
| Q |
2 |
gcagcaccacagacaaataaggacccagtaattactgaagcagaggcacataccattacggtacaacaaaaggatattccacaagaggaagtgaatcacg |
101 |
Q |
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| T |
19102372 |
gcagcaccttagacaaataaggacccagtaattactgaagcagaggcacataccattacggtacagcaaaaggatattccacaagaggcagtgaatcacg |
19102471 |
T |
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| Q |
102 |
aaattattgcagtggatgagcaatcaccctcggccactgtgaatgtaccatctgaacatcaaaatttggggttcgacaccattgaaggagatacaacgca |
201 |
Q |
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| T |
19102472 |
aaattattgcagtggatgagcaatcaccctcgggcactgtgaatgtaccatctgaacatcaaaatttggggtccgacaccattgaaggagatacaacgca |
19102571 |
T |
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| Q |
202 |
gcacttggagcatacaaacagcccacctcccccggaaaccacgcaacaacagacaccacaacaggcagccactgttgcgcccattactcatgaagttgtg |
301 |
Q |
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| T |
19102572 |
gcacttggagcatacaaacagcccacctcccccggaaaccatgcaacaacagacaccacaataggcatccactgttgcgcccattactcatgaagttgtg |
19102671 |
T |
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| Q |
302 |
ccattggaggtggcagaagaacatcaatctattgacaatgcagccattccggttgt |
357 |
Q |
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| T |
19102672 |
ccattggaggtggcagaagaacatcaatctattgacaatgctgccattccgattgt |
19102727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 29 - 357
Target Start/End: Complemental strand, 36031105 - 36030777
Alignment:
| Q |
29 |
gtaattactgaagcagaggcacataccattacggtacaacaaaaggatattccacaagaggaagtgaatcacgaaattattgcagtggatgagcaatcac |
128 |
Q |
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| T |
36031105 |
gtaattactgaagcagaggcacataccattacgatacagcagcaagatattccacaggaggcagtgaatcacggaattattgcagtggaggagcaatcac |
36031006 |
T |
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| Q |
129 |
cctcggccactgtgaatgtaccatctgaacatcaaaatttggggttcgacaccattgaaggagatacaacgcagcacttggagcatacaaacagcccacc |
228 |
Q |
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| T |
36031005 |
cctcggccactgtgaaggtaccatctgaacatcaaaatttggggtccgacaccattgaaggagatacaacacatcacttggagcatacaaacaacccacc |
36030906 |
T |
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| Q |
229 |
tcccccggaaaccacgcaacaacagacaccacaacaggcagccactgttgcgcccattactcatgaagttgtgccattggaggtggcagaagaacatcaa |
328 |
Q |
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| T |
36030905 |
tccctcggaaaccacgcaacaatagacaccacaacaagaagccactgctgcgcctattcctcatgaagttgtgttgttggaggtggcagaagtacatcaa |
36030806 |
T |
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| Q |
329 |
tctattgacaatgcagccattccggttgt |
357 |
Q |
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| T |
36030805 |
tctattgacaatgttgccattccggttgt |
36030777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 2 - 152
Target Start/End: Complemental strand, 11868942 - 11868789
Alignment:
| Q |
2 |
gcagcaccacagacaaataaggacccagtaattactgaagcagaggcacataccattacggtacaacaaaaggatattccacaagaggaagtgaatcacg |
101 |
Q |
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|||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| | ||||||||| |||||| |||||||||| |
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| T |
11868942 |
gcagcacctcagacaaataaggacccggtaattgctgaagcagaggcacataccattacggtacaacaacaagatattccataagaggcagtgaatcaca |
11868843 |
T |
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| Q |
102 |
aaattattgcagtgg---atgagcaatcaccctcggccactgtgaatgtaccat |
152 |
Q |
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| T |
11868842 |
aaattattgcagtggaacaggagcaatcacgctcggccactgcgaatgtaccat |
11868789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 21164084 - 21164035
Alignment:
| Q |
161 |
caaaatttggggttcgacaccattgaaggagatacaacgcagcacttgga |
210 |
Q |
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| T |
21164084 |
caaaacttggggtccgacaccattgaaggagatatagggcagcacttgga |
21164035 |
T |
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