View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21469_high_12 (Length: 352)
Name: NF21469_high_12
Description: NF21469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21469_high_12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 6 - 352
Target Start/End: Original strand, 34971709 - 34972056
Alignment:
| Q |
6 |
agcagcagagacaagggaagaagagccatcatcaaaatcagagaaagaattaatagaacatttctgatcattgttaaagaaatcctcaaaatacttggtc |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34971709 |
agcatcagagacaagggaagaagagccatcatcaaaatcagagaaagaattaatagaacatttctgatcattgttaaagaaatcctcaaaatacttggtc |
34971808 |
T |
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| Q |
106 |
caactactctcctcagaagactcaaaacttatcatgttattgttagaaggagctttgcttattgaactcattgaagctattgtttaatttaattttgaaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34971809 |
caactactctcctcagaagactcaaaacttatcatgttattgttggatggagctttgcttattgaactcattgaagctattgtttaatttaattttgaaa |
34971908 |
T |
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| Q |
206 |
agccaacaagagaagataaagaatatatatatgatgtaattagttgagtttggtggctagtt-taaagagggaatgtctctaacataaagcacatatata |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34971909 |
agccaacaagagaagataaagaatatatatatgatgtaattagttgagtttggtggctagttctaaagagggaatgtctctaacataaagcacatatata |
34972008 |
T |
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| Q |
305 |
gagtatattccaaaataattatgaagaattaattaatatagataaata |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34972009 |
gagtatattccaaaataattatgaagaattaattaatatagataaata |
34972056 |
T |
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