View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21469_high_2 (Length: 635)
Name: NF21469_high_2
Description: NF21469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21469_high_2 |
 | |
|
| [»] scaffold0685 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0685 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: scaffold0685
Description:
Target: scaffold0685; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 17 - 609
Target Start/End: Complemental strand, 6310 - 5720
Alignment:
| Q |
17 |
aacaaacgatcctagaaatgatgatataatataatatgatcatagaaacattaattgtaattgcaaagcaaagtgaggtgtaaaaagcgaatttgagacg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6310 |
aacaaacgatcctagaaatgatgatataatataatatgatcatagaaacattaattgtaattgcaaagcaaagtgaggtgtaaaaagcgaatttgagacg |
6211 |
T |
|
| Q |
117 |
gcttgaggaggagcacagacacaccgtacctagctttatttcacattgataaataactcatccttatgcagagtttctgaaaccaaaacgtgattacaaa |
216 |
Q |
| |
|
||| || || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6210 |
gcta-agtttga-cacagacacaccgtacctagccttatttcacattgataaataactcatccttatgcagagtttctgaaaccaaaacgtgattacaaa |
6113 |
T |
|
| Q |
217 |
tcatcaannnnnnncatcaacagatatcacaaattagaagttagcaaactttttatctttgaaactttctacaatctctttgaggctcacttccagggga |
316 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||| |
|
|
| T |
6112 |
tcatcaatttttttcatcaacgtatatcacaaattagaagttagcaaactttttatctttgaaactttctacgatctctctaaggctcacttccagggga |
6013 |
T |
|
| Q |
317 |
ataaattcaactcccaatgtctttgccttttctttggaaacttgaaatgtttgcatcaaaggcttatcatctgcacacctgataacatagttcacaaaat |
416 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| ||| |||| |
|
|
| T |
6012 |
ataaattcaactcctaaggtctttgccttttctttggaaacctgaaatgtttgcatcaaaggcttatcgtctgcgcacctgataacatagtccaccaaat |
5913 |
T |
|
| Q |
417 |
gaaatttattagtagttagaaaaattaggcctgaaaagcaacatattttggtatgacatatgaagaagattccaataaattgaccctgtcatgcttataa |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5912 |
gaaatttattagtagttagaaaaattaggcctgaaaagcaacatattttggtataacatatgaagaagattccaataaattgaccctgtcatgcttataa |
5813 |
T |
|
| Q |
517 |
aaaatcgcgatacataatgtaggattaatgctaaagttaccaattgttctagtactcctctcgttttttgagaggtcaataatcaaacttact |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5812 |
aaaatcgcgatacataatgtaggattaatgctcaagttaccaattgttctagtactcctttcgttttttgagaggtcaataatcaaacttact |
5720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 476; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 17 - 609
Target Start/End: Complemental strand, 29550637 - 29550047
Alignment:
| Q |
17 |
aacaaacgatcctagaaatgatgatataatataatatgatcatagaaacattaattgtaattgcaaagcaaagtgaggtgtaaaaagcgaatttgagacg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29550637 |
aacaaacgatcctagaaatgatgatataatataatatgatcatagaaacattaattgtaattgcaaagcaaagtgaggtgtaaaaagcgaatttgagacg |
29550538 |
T |
|
| Q |
117 |
gcttgaggaggagcacagacacaccgtacctagctttatttcacattgataaataactcatccttatgcagagtttctgaaaccaaaacgtgattacaaa |
216 |
Q |
| |
|
||| || || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29550537 |
gcta-agtttga-cacagacacaccgtacctagccttatttcacattgataaataactcatccttatgcagagtttctgaaaccaaaacgtgattacaaa |
29550440 |
T |
|
| Q |
217 |
tcatcaannnnnnncatcaacagatatcacaaattagaagttagcaaactttttatctttgaaactttctacaatctctttgaggctcacttccagggga |
316 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||| |
|
|
| T |
29550439 |
tcatcaatttttttcatcaacgtatatcacaaattagaagttagcaaactttttatctttgaaactttctacgatctctctaaggctcacttccagggga |
29550340 |
T |
|
| Q |
317 |
ataaattcaactcccaatgtctttgccttttctttggaaacttgaaatgtttgcatcaaaggcttatcatctgcacacctgataacatagttcacaaaat |
416 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| ||| |||| |
|
|
| T |
29550339 |
ataaattcaactcctaaggtctttgccttttctttggaaacctgaaatgtttgcatcaaaggcttatcgtctgcgcacctgataacatagtccaccaaat |
29550240 |
T |
|
| Q |
417 |
gaaatttattagtagttagaaaaattaggcctgaaaagcaacatattttggtatgacatatgaagaagattccaataaattgaccctgtcatgcttataa |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29550239 |
gaaatttattagtagttagaaaaattaggcctgaaaagcaacatattttggtataacatatgaagaagattccaataaattgaccctgtcatgcttataa |
29550140 |
T |
|
| Q |
517 |
aaaatcgcgatacataatgtaggattaatgctaaagttaccaattgttctagtactcctctcgttttttgagaggtcaataatcaaacttact |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29550139 |
aaaatcgcgatacataatgtaggattaatgctcaagttaccaattgttctagtactcctttcgttttttgagaggtcaataatcaaacttact |
29550047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 258 - 417
Target Start/End: Complemental strand, 29560729 - 29560570
Alignment:
| Q |
258 |
tagcaaactttttatctttgaaactttctacaatctctttgaggctcacttccaggggaataaattcaactcccaatgtctttgccttttctttggaaac |
357 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||| |||| | |||| ||||| ||||||||||||||||| |
|
|
| T |
29560729 |
tagcaaactttttttctttgaaactttctatgatctctttgaggctcatttccaggggaataaaatcaattaccaaggtcttcgccttttctttggaaac |
29560630 |
T |
|
| Q |
358 |
ttgaaatgtttgcatcaaaggcttatcatctgcacacctgataacatagttcacaaaatg |
417 |
Q |
| |
|
||||||||||||||| ||| | ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29560629 |
ttgaaatgtttgcataaaaagtttatcgtctgcacacctgataacatagttcacaaaatg |
29560570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 240 - 405
Target Start/End: Complemental strand, 29556873 - 29556708
Alignment:
| Q |
240 |
atatcacaaattagaagttagcaaactttttatctttgaaactttctacaatctctttgaggctcacttccaggggaataaattcaactcccaatgtctt |
339 |
Q |
| |
|
||||||||| ||||||||||||||| | ||| ||||||||||||||||| |||||| | ||||||||||| |||||||||||||||| |||||| ||||| |
|
|
| T |
29556873 |
atatcacaatttagaagttagcaaattctttttctttgaaactttctacgatctctctaaggctcacttcaaggggaataaattcaattcccaacgtctt |
29556774 |
T |
|
| Q |
340 |
tgccttttctttggaaacttgaaatgtttgcatcaaaggcttatcatctgcacacctgataacata |
405 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||| ||||| |
|
|
| T |
29556773 |
tgccttttctttggaaatctgaaatgtttgcatcaaaggcttatcacccgcacacctgattacata |
29556708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 29560827 - 29560767
Alignment:
| Q |
152 |
ttatttcacattgataaataactcatccttatgcagagtttctgaaaccaaaacgtgatta |
212 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
29560827 |
ttatttcacattaataaataactcatccttctgcagagtttctgaaaccaaaacatgatta |
29560767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 238 - 419
Target Start/End: Complemental strand, 109400 - 109219
Alignment:
| Q |
238 |
agatatcacaaattagaagttagcaaactttttatctttgaaactttctacaatctctttgaggctcacttccaggggaataaattcaactcccaatgtc |
337 |
Q |
| |
|
||||||||||||||| ||||| | ||||| || ||||| |||||||| ||| | || |||| ||||||||||| ||| || |||||| |||||| || |
|
|
| T |
109400 |
agatatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttccaaaggagtatattcaattcccaaactc |
109301 |
T |
|
| Q |
338 |
tttgccttttctttggaaacttgaaatgtttgcatcaaaggcttatcatctgcacacctgataacatagttcacaaaatgaa |
419 |
Q |
| |
|
|||||||||||||||||| ||| |||| ||| | |||||||| || ||||||||| |||||||||| ||||| |||| |
|
|
| T |
109300 |
gttgccttttctttggaaaactgatatgtaggcacatatggcttatcgtccgcacacctggtaacatagttaacaaagtgaa |
109219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 238 - 420
Target Start/End: Complemental strand, 90603 - 90421
Alignment:
| Q |
238 |
agatatcacaaattagaagttagcaaactttttatctttgaaactttctacaatctctttgaggctcacttccaggggaataaattcaactcccaatgtc |
337 |
Q |
| |
|
||||| ||||||||| | ||| || ||||| || ||||| |||||||| ||| |||| |||| ||||||||||| ||| || |||||| |||||| | |
|
|
| T |
90603 |
agataccacaaattaaaggttggcgaacttcttttctttcaaactttcaacagtctccttgatgctcacttccaaaggagtatattcaagtcccaagctt |
90504 |
T |
|
| Q |
338 |
tttgccttttctttggaaacttgaaatgtttgcatcaaaggcttatcatctgcacacctgataacatagttcacaaaatgaaa |
420 |
Q |
| |
|
|| ||||||||||||||||| ||| || | ||| | |||||||| || ||||||||| |||||||||| ||||| ||||| |
|
|
| T |
90503 |
ttcgccttttctttggaaacctgatatataggcacatatggcttatcgtccgcacacctggtaacatagttgacaaagtgaaa |
90421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University