View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21469_high_20 (Length: 335)
Name: NF21469_high_20
Description: NF21469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21469_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 916414 - 916087
Alignment:
| Q |
1 |
gtaggagtatggaggaaaacgatgaagggaaaccgaaagaaccaaatgaaaagggctttttgtcaagagaaaggaagaaaagcaagtatctgtcgcctcc |
100 |
Q |
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| T |
916414 |
gtaggagtatggaggaaaacgatgaagggaaaccaaaagaaccaaatgaaaagggctttttgtcaagagaaaggaagaaaagcaagtatctgtcgcctcc |
916315 |
T |
|
| Q |
101 |
tttcactacttcaatcagagactttgtgaagggaagaggttctggctcgctttctcctcgagtttcaaagtataacattgaggtatttcaagagttggaa |
200 |
Q |
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| T |
916314 |
tttcactacttcaatcagagactttgtgaagggaagaggttctggctcgctttctcctcgagtttcaaagtataacattgaggtatttcaagagttggaa |
916215 |
T |
|
| Q |
201 |
cttttggttagcttgaatcaccaaacaccagatgatgagaaagagacccttgacgatttgatcgatgaaaggcgtgagatttctgttggcgaatttgttt |
300 |
Q |
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| T |
916214 |
cttttggttagcttgaatcaccaaacaccagatgatgagaaagagacccttgacgatttgatcgatgaaaggcgtgagatttctgttggcgaatttgttt |
916115 |
T |
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| Q |
301 |
ggggaaagattaagagtcgtctgtggtg |
328 |
Q |
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| T |
916114 |
ggggaaagattaagagtcgtctgtggtg |
916087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 1001286 - 1001525
Alignment:
| Q |
14 |
ggaaaacgatgaagggaaaccgaaagaaccaaatgaaaagggctttttgtcaagagaaaggaagaaaagcaagtatctgtcgcctcctttcactacttca |
113 |
Q |
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| T |
1001286 |
ggaaaacgatgaagggaagccgaaagaaccaaatgaaaaaggttttttgtcaagagaaaggaagaaaagcaagtatttgtcgcctcctttcactacttca |
1001385 |
T |
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| Q |
114 |
atcagagactttgtgaagggaagaggttctggctcgctttctcctcgagtttcaaagtataacattgaggtatttcaagagttggaacttttggttagct |
213 |
Q |
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| T |
1001386 |
atcagagactttgtgaagggaagaggttctggcccgctttctcctcgagtttcaaagtataacagtgaggcatttcaagagtttgaattttctgttagct |
1001485 |
T |
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| Q |
214 |
tgaatcaccaaacaccagatgatgagaaagagacccttga |
253 |
Q |
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| T |
1001486 |
tgaatcaccaaacaccagatgatgagaaagagactcttga |
1001525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 250 - 328
Target Start/End: Complemental strand, 917452 - 917374
Alignment:
| Q |
250 |
ttgacgatttgatcgatgaaaggcgtgagatttctgttggcgaatttgtttggggaaagattaagagtcgtctgtggtg |
328 |
Q |
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|||| |||||||||||||||||| |||| |||||||||| || ||||||||||||||||||||||||| ||||||||| |
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| T |
917452 |
ttgaggatttgatcgatgaaaggtgtgacttttctgttggtgattttgtttggggaaagattaagagtcatctgtggtg |
917374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 250 - 328
Target Start/End: Original strand, 1000235 - 1000313
Alignment:
| Q |
250 |
ttgacgatttgatcgatgaaaggcgtgagatttctgttggcgaatttgtttggggaaagattaagagtcgtctgtggtg |
328 |
Q |
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||||||||||||| ||||||||| |||| |||||||||| || ||||||||||||||||||||||||| || |||||| |
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| T |
1000235 |
ttgacgatttgattgatgaaaggtgtgacttttctgttggagattttgtttggggaaagattaagagtcatccgtggtg |
1000313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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