View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21469_high_23 (Length: 323)

Name: NF21469_high_23
Description: NF21469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21469_high_23
NF21469_high_23
[»] chr5 (19 HSPs)
chr5 (121-317)||(29860905-29861101)
chr5 (121-317)||(33134124-33134320)
chr5 (129-307)||(33007931-33008109)
chr5 (121-307)||(15922112-15922299)
chr5 (163-307)||(7883745-7883889)
chr5 (163-317)||(5868242-5868395)
chr5 (126-317)||(25346985-25347187)
chr5 (121-305)||(31077897-31078078)
chr5 (1-44)||(29861178-29861221)
chr5 (121-181)||(21091191-21091252)
chr5 (183-290)||(21092372-21092479)
chr5 (217-310)||(39351321-39351414)
chr5 (254-307)||(42683974-42684027)
chr5 (1-42)||(25346860-25346901)
chr5 (4-44)||(21091074-21091114)
chr5 (2-42)||(39351582-39351622)
chr5 (1-44)||(31078179-31078222)
chr5 (1-39)||(33134402-33134440)
chr5 (3-44)||(33007807-33007848)
[»] chr8 (21 HSPs)
chr8 (121-310)||(16295382-16295570)
chr8 (121-310)||(16303084-16303272)
chr8 (121-308)||(37246211-37246397)
chr8 (121-317)||(40953266-40953463)
chr8 (121-310)||(43596876-43597066)
chr8 (121-300)||(11656274-11656454)
chr8 (121-307)||(27696279-27696463)
chr8 (121-307)||(15268673-15268860)
chr8 (189-307)||(32962103-32962221)
chr8 (163-298)||(35010673-35010807)
chr8 (1-45)||(16295646-16295690)
chr8 (1-45)||(16303348-16303392)
chr8 (163-317)||(16456533-16456687)
chr8 (1-45)||(27696540-27696584)
chr8 (1-44)||(40953540-40953583)
chr8 (3-45)||(37246470-37246512)
chr8 (1-44)||(3174228-3174271)
chr8 (1-44)||(11656156-11656199)
chr8 (1-44)||(15268937-15268980)
chr8 (1-42)||(511950-511991)
chr8 (1-42)||(43597145-43597186)
[»] chr6 (14 HSPs)
chr6 (121-317)||(23404524-23404720)
chr6 (121-307)||(9314855-9315041)
chr6 (123-317)||(29979329-29979521)
chr6 (121-299)||(10789350-10789529)
chr6 (127-317)||(12255148-12255339)
chr6 (121-307)||(32329397-32329574)
chr6 (163-232)||(391239-391308)
chr6 (144-316)||(24660744-24660917)
chr6 (1-42)||(391093-391134)
chr6 (1-44)||(12255423-12255466)
chr6 (1-44)||(23404797-23404840)
chr6 (1-45)||(10789231-10789275)
chr6 (1-44)||(9315118-9315161)
chr6 (1-42)||(32329652-32329693)
[»] chr4 (19 HSPs)
chr4 (121-317)||(37910591-37910787)
chr4 (126-307)||(34513686-34513868)
chr4 (121-307)||(45499102-45499291)
chr4 (121-302)||(5787228-5787410)
chr4 (121-307)||(28115853-28116040)
chr4 (121-271)||(44290095-44290246)
chr4 (121-317)||(3767773-3767970)
chr4 (125-307)||(34940338-34940521)
chr4 (121-265)||(34513934-34514078)
chr4 (128-317)||(17702165-17702355)
chr4 (165-317)||(53923756-53923908)
chr4 (1-42)||(36198624-36198665)
chr4 (1-44)||(44289435-44289478)
chr4 (247-310)||(54103407-54103470)
chr4 (1-45)||(34940601-34940645)
chr4 (1-45)||(37910472-37910516)
chr4 (1-44)||(45498982-45499025)
chr4 (11-45)||(5787121-5787155)
chr4 (2-44)||(28115542-28115584)
[»] chr1 (10 HSPs)
chr1 (121-317)||(28622840-28623037)
chr1 (134-317)||(49549551-49549734)
chr1 (155-317)||(37346973-37347136)
chr1 (121-310)||(19910044-19910236)
chr1 (163-301)||(10306761-10306901)
chr1 (1-44)||(37346166-37346209)
chr1 (4-45)||(52268248-52268289)
chr1 (1-44)||(19910323-19910366)
chr1 (241-308)||(35508883-35508950)
chr1 (1-44)||(10306616-10306660)
[»] chr7 (14 HSPs)
chr7 (121-317)||(18503004-18503203)
chr7 (121-317)||(15672890-15673077)
chr7 (121-302)||(34703087-34703272)
chr7 (121-196)||(34866371-34866447)
chr7 (144-317)||(28428979-28429154)
chr7 (240-307)||(6110188-6110255)
chr7 (163-310)||(34183115-34183262)
chr7 (163-310)||(34203704-34203851)
chr7 (1-44)||(34866251-34866294)
chr7 (144-209)||(17508667-17508733)
chr7 (144-209)||(17544481-17544547)
chr7 (163-205)||(6110260-6110302)
chr7 (161-298)||(3480695-3480832)
chr7 (236-317)||(25102676-25102757)
[»] chr2 (16 HSPs)
chr2 (121-317)||(40619623-40619820)
chr2 (121-302)||(13996080-13996262)
chr2 (121-317)||(41595278-41595475)
chr2 (122-307)||(13349429-13349615)
chr2 (121-284)||(19695756-19695918)
chr2 (121-307)||(27338768-27338944)
chr2 (207-317)||(37485638-37485746)
chr2 (3-44)||(40619505-40619546)
chr2 (1-44)||(37485884-37485927)
chr2 (144-283)||(15665348-15665492)
chr2 (1-44)||(19695995-19696038)
chr2 (1-43)||(27339023-27339065)
chr2 (177-299)||(34355853-34355975)
chr2 (121-170)||(37485758-37485807)
chr2 (1-44)||(13995547-13995590)
chr2 (1-44)||(41595551-41595594)
[»] chr3 (13 HSPs)
chr3 (121-302)||(40700954-40701135)
chr3 (121-317)||(28457711-28457903)
chr3 (163-307)||(21748365-21748509)
chr3 (188-302)||(33072676-33072790)
chr3 (163-301)||(45853076-45853214)
chr3 (153-301)||(21153349-21153498)
chr3 (220-310)||(7818444-7818533)
chr3 (164-206)||(33072806-33072848)
chr3 (153-270)||(46663287-46663405)
chr3 (1-45)||(54819666-54819711)
chr3 (1-44)||(40700834-40700877)
chr3 (163-200)||(21495228-21495265)
chr3 (1-42)||(41864798-41864839)
[»] scaffold0957 (1 HSPs)
scaffold0957 (128-317)||(1693-1885)


Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 121 - 317
Target Start/End: Complemental strand, 29861101 - 29860905
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatatttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcag 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  29861101 taatagaaaatacatgctataactattttaaaaatgacaatatttaaaaatggcagaatatcaagataataaataaggaatgatcttctaatcccatcag 29861002  T
Q  221 gataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 317  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  29861001 gataatttctaacttagcctatactcaggatataaattacaaaggaaagtcatgatatgatagggaaatggtttattttatcctatctctttggtgc 29860905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 121 - 317
Target Start/End: Complemental strand, 33134320 - 33134124
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 219  Q
    |||||||||||||||||||| | |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||  ||| |    
T  33134320 taatagaaaatacatgctatcattattttaaaaatgacaatattttaaaaatgacagaatatcaagataataaataaggaatgatcttctaattccat-a 33134222  T
Q  220 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 317  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||| || ||||||    
T  33134221 ggataatttctaacctagcctatactcatgatagaaattacaaaggaaagtcaggataggataggaaaatggtttattttatcctatccctttggtgc 33134124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 129 - 307
Target Start/End: Original strand, 33007931 - 33008109
Alignment:
Q  129 aatacatgctataactattttaaaaatgacaatatttaaa-aatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatt 227  Q
    ||||||| |||| | |||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  33007931 aatacatcctatcattattttaaaaatgacaatattttaataatgacagaatatcaagataataaataaggaatgatcttctaatcccatcaggataatt 33008030  T
Q  228 tctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 307  Q
    ||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||| | ||||| ||||||||||||||||    
T  33008031 tctaacccagcttatactcaggataaaaattacaaaggaaagtcaggatatgata-gaaaatgatttattttatcctatc 33008109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 121 - 307
Target Start/End: Original strand, 15922112 - 15922299
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatatttaaaaat-ggcagaatatcaagataataaataaggaaagatcttctaatcacatca 219  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||  |||||||||||| |||||    
T  15922112 taatagaaaatacatgctatcattattttaaaaatgacaatatttaaaaaaaggcagaatatcaagataattaataaggattgatcttctaatcccatca 15922211  T
Q  220 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 307  Q
    ||||||||||||||| | || |||||||  ||| ||||||||||||||||||| ||||||||||  ||||  ||||||||||| ||||    
T  15922212 ggataatttctaacccaaccgatactcaaaatagaaattacaaaggaaagtcatgatatgatagaaaaataatttattttatcatatc 15922299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 163 - 307
Target Start/End: Original strand, 7883745 - 7883889
Alignment:
Q  163 tttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattacaa 262  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||| | ||||||||||||| ||| |||||||||    
T  7883745 tttaaaaatggcagaatataaagataataaataaggaatgatcttctaatcccatcaggataatttctaatccagcctatactcagaatagaaattacaa 7883844  T
Q  263 aggaaagtcaggatatgatagggaaatggtttattttatcctatc 307  Q
    |||||| |||| ||| |||||| ||||||||||||||||||||||    
T  7883845 aggaaattcagaataggataggaaaatggtttattttatcctatc 7883889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 163 - 317
Target Start/End: Original strand, 5868242 - 5868395
Alignment:
Q  163 tttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattacaa 262  Q
    ||||||||||||||||||||| |||||||||||| ||| |||||||||| | |||||||||| ||||||||| |||| ||||||| |||| |||||||||    
T  5868242 tttaaaaatggcagaatatcacgataataaataacgaatgatcttctaacc-catcaggatagtttctaacccagccaatactcaagatagaaattacaa 5868340  T
Q  263 aggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 317  Q
    ||||||||| ||||| |||||| ||||||||||||||||||||||||| ||||||    
T  5868341 aggaaagtcgggataggataggaaaatggtttattttatcctatctctttggtgc 5868395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 126 - 317
Target Start/End: Original strand, 25346985 - 25347187
Alignment:
Q  126 gaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggata 224  Q
    ||||||||||||||| | |||||||||||||||||||||| |||||||||| |||||||||||| |||||||  || ||| |||||||| | ||||||||    
T  25346985 gaaaatacatgctatcattattttaaaaatgacaatattttaaaaatggcataatatcaagatagtaaataaaaaatgatgttctaatcccgtcaggata 25347084  T
Q  225 atttctaac----------ctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtgg 314  Q
    |||||||||          ||||| |||||| | |||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||| || |||    
T  25347085 atttctaacccatcttatactagcttatactaatgatagaaattacaaaggaaaatcaggatatgataggaaaatggtttattttatcctatccctttgg 25347184  T
Q  315 tgc 317  Q
    |||    
T  25347185 tgc 25347187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 121 - 305
Target Start/End: Complemental strand, 31078078 - 31077897
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatatttaaa-aatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 219  Q
    ||||||||||||||||||||   ||||||||| |||| ||||||| || ||||  | |||||||   |||||||||||||| |||||||||||| |||||    
T  31078078 taatagaaaatacatgctatcgttattttaaatatgaaaatattttaagaatgataaaatatca---taataaataaggaatgatcttctaatc-catca 31077983  T
Q  220 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatccta 305  Q
    ||||||||||||||  ||| ||||||||||||||||||||||||||||||||| ||||  ||| | |||| |||||||||||||||    
T  31077982 ggataatttctaactcagcttatactcaggatataaattacaaaggaaagtcatgatagaataagaaaatagtttattttatccta 31077897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 29861221 - 29861178
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  29861221 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 29861178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 21091191 - 21091252
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatat 181  Q
    |||||||||||||||||||| | |||||||||||||||||||||| |||||||| |||||||    
T  21091191 taatagaaaatacatgctatcattattttaaaaatgacaatatttcaaaaatggtagaatat 21091252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 290
Target Start/End: Original strand, 21092372 - 21092479
Alignment:
Q  183 aagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgata 282  Q
    |||||||| |||||| || ||| |||||||| |||||||||||||| ||||  ||  |||| |||||||| |||||||| |||||||| ||||||  |||    
T  21092372 aagataatgaataagaaatgatattctaatctcatcaggataatttataactcagtttatattcaggatagaaattacataggaaagtgaggataatata 21092471  T
Q  283 gggaaatg 290  Q
    || |||||    
T  21092472 ggaaaatg 21092479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 310
Target Start/End: Complemental strand, 39351414 - 39351321
Alignment:
Q  217 tcaggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctct 310  Q
    |||||||||||| ||||| | |||| |||||||||| || ||||||||  |||| || |||||||| | ||||| |||||||||| ||||||||    
T  39351414 tcaggataatttataacccaacctacactcaggataaaatttacaaagacaagttagtatatgatatgaaaatgatttattttattctatctct 39351321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 42683974 - 42684027
Alignment:
Q  254 aaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 307  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||||| ||||    
T  42683974 aaattacaaaggaaagtcaggatatgatagaaaaatgatttattttatcttatc 42684027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 25346860 - 25346901
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaa 42  Q
    ||||||||| |||||||||||||||| |||||||||||||||    
T  25346860 acattaatcctatcatgtgtttgatgcgcacatgataacaaa 25346901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 21091074 - 21091114
Alignment:
Q  4 ttaatcttatcatgtgtttgatgtgcacatgataacaaaca 44  Q
    |||||| |||||||||||||||| |||||||||||||||||    
T  21091074 ttaatcctatcatgtgtttgatgcgcacatgataacaaaca 21091114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 39351622 - 39351582
Alignment:
Q  2 cattaatcttatcatgtgtttgatgtgcacatgataacaaa 42  Q
    |||||||| |||||||||||||||| |||||||||||||||    
T  39351622 cattaatcatatcatgtgtttgatgcgcacatgataacaaa 39351582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31078222 - 31078179
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 44  Q
    ||||||||  |||||||||||||||| |||||||||||||||||    
T  31078222 acattaattctatcatgtgtttgatgcgcacatgataacaaaca 31078179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 33134440 - 33134402
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataac 39  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  33134440 acattaatcctatcatgtgtttgatgcgcacatgataac 33134402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 33007807 - 33007848
Alignment:
Q  3 attaatcttatcatgtgtttgatgtgcacatgataacaaaca 44  Q
    ||||||| ||||||||||||||||  ||||||||||||||||    
T  33007807 attaatcatatcatgtgtttgatgcacacatgataacaaaca 33007848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 121 - 310
Target Start/End: Complemental strand, 16295570 - 16295382
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatatttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcag 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||| |||||     
T  16295570 taatagaaaatacatgctataactattttaaaaatgacaatatttaaaaatggtagaatatcaagataataaataaggaatgatcttccaatcccatca- 16295472  T
Q  221 gataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctct 310  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||    
T  16295471 gataatttctaacctagtctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaattgtttattgtatgctatctct 16295382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 121 - 310
Target Start/End: Complemental strand, 16303272 - 16303084
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatatttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcag 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||| |||||     
T  16303272 taatagaaaatacatgctataactattttaaaaatgacaatatttaaaaatggtagaatatcaagataataaataaggaatgatcttccaatcccatca- 16303174  T
Q  221 gataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctct 310  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||    
T  16303173 gataatttctaacctagtctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaattgtttattgtatgctatctct 16303084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 121 - 308
Target Start/End: Complemental strand, 37246397 - 37246211
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatatttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcag 220  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||    
T  37246397 taatagaaaatacatgttataactattttaaaaataacaatatttaaaaatggcagaatatcaagataataaataaggaatgatcttctaatcccctcag 37246298  T
Q  221 gataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatct 308  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||    
T  37246297 gataatttctaacctagcctatactcaagatataaattacaaaggaaagtcagaatatg-tagggaaatgggttattttatcctatct 37246211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 121 - 317
Target Start/End: Complemental strand, 40953463 - 40953266
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 219  Q
    ||||| |||||||||||||| | |||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||| ||| |    
T  40953463 taataaaaaatacatgctatcattattttaaaaatgacaatattttaaaaagggcagaatatcaaggtaataaataaggaatgatcttctaatcccatta 40953364  T
Q  220 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 317  Q
      ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||  ||||| ||||||| ||| ||||||| ||||||    
T  40953363 taataatttctaacccagcctatactcaggataaaaattacaaaggaaagtcaggatatgatagaaaaatgatttatttcatcatatctctttggtgc 40953266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 121 - 310
Target Start/End: Complemental strand, 43597066 - 43596876
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 219  Q
    |||||||||||||||||||| | |||||| ||||||||||||||| |||||||||||||||| ||||| |||||||||||  |||||||||||| |||||    
T  43597066 taatagaaaatacatgctatgattatttttaaaatgacaatattttaaaaatggcagaatataaagattataaataaggagtgatcttctaatctcatca 43596967  T
Q  220 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctct 310  Q
    ||||||||| ||||  |  ||||||||||||||||||||||||||||||||| |||||||||||  ||||| |||||||||||||||||||    
T  43596966 ggataatttttaactcaatctatactcaggatataaattacaaaggaaagtcgggatatgatagaaaaatgatttattttatcctatctct 43596876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 121 - 300
Target Start/End: Original strand, 11656274 - 11656454
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatattta-aaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 219  Q
    ||||||||| |||||||||| | ||||||||||||||||||||||  ||||||| ||||||| |||| ||||||||||||| |||||||||||| ||| |    
T  11656274 taatagaaattacatgctatcattattttaaaaatgacaatattttcaaaatggtagaatattaagacaataaataaggaatgatcttctaatctcatta 11656373  T
Q  220 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttatttta 300  Q
    ||||||||||||||| | |||||| |||||||| |||||||||||||||||||||||| |||||  |||||||||||||||    
T  11656374 ggataatttctaacccaacctatattcaggatagaaattacaaaggaaagtcaggataggatagaaaaatggtttatttta 11656454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 121 - 307
Target Start/End: Complemental strand, 27696463 - 27696279
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 219  Q
    |||||||||||||||||||| | |||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||| ||||| |||||| |||||    
T  27696463 taatagaaaatacatgctatcattattttaaaaataacaatattttaaaaatgacagaatatcaagataataaataaggaatgatctcctaatcccatca 27696364  T
Q  220 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 307  Q
     |||||||||||||||||| ||||| |||||||||||||||||||   | ||| |||| |||||| |||| |||||||||||| ||||    
T  27696363 agataatttctaacctagcttatacacaggatataaattacaaag---aatcaagataagataggaaaatagtttattttatcatatc 27696279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 121 - 307
Target Start/End: Complemental strand, 15268860 - 15268673
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaa-tgacaatatttaa-aaatggcagaatatcaagataataaataaggaaagatcttctaatcacatc 218  Q
    |||||||||||||||||||| | ||||||||| | ||||| ||||| | |||||| |||||||||||||||||||||||||| |||||| ||||| |||     
T  15268860 taatagaaaatacatgctatcattattttaaacactgacagtattttataaatggtagaatatcaagataataaataaggaacgatcttttaatc-catt 15268762  T
Q  219 aggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 307  Q
    |||||||||||||||| ||| |||||| || ||| |||||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  15268761 aggataatttctaacccagcatatacttagaataaaaattacaaaggaaagtcgggataggataggaaaatggtttattttatcctatc 15268673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 189 - 307
Target Start/End: Complemental strand, 32962221 - 32962103
Alignment:
Q  189 ataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaa 288  Q
    |||||| ||||| |||||||||||| |||||||||||||| ||||  ||| | ||||||||||| ||||||||||||||||||||||||||||||| |||    
T  32962221 ataaatgaggaatgatcttctaatctcatcaggataatttataactcagcttgtactcaggatagaaattacaaaggaaagtcaggatatgataggaaaa 32962122  T
Q  289 tggtttattttatcctatc 307  Q
    | ||||||||||| |||||    
T  32962121 tagtttattttattctatc 32962103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 298
Target Start/End: Original strand, 35010673 - 35010807
Alignment:
Q  163 tttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattacaa 262  Q
    |||||||||||   |||| ||||||||||||||||||| |||||| ||||| |||| ||||| |||||||  ||||| ||||||||| |||||||||||     
T  35010673 tttaaaaatggtgaaatagcaagataataaataaggaatgatcttttaatctcatcgggatagtttctaatttagccaatactcagg-tataaattacag 35010771  T
Q  263 aggaaagtcaggatatgatagggaaatggtttattt 298  Q
    | |||||| | |||| |||||| |||||||||||||    
T  35010772 acgaaagtaatgataagataggaaaatggtttattt 35010807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16295690 - 16295646
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaacag 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  16295690 acattaatcttatcatgtgtttgatgtgcacatgataacaaacag 16295646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16303392 - 16303348
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaacag 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  16303392 acattaatcttatcatgtgtttgatgtgcacatgataacaaacag 16303348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 317
Target Start/End: Complemental strand, 16456687 - 16456533
Alignment:
Q  163 tttaaaaatggcagaatatcaagataataaataaggaa-agatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattaca 261  Q
    |||||||||| |||||| ||| ||| ||||||||| || | || || |||||  |||| ||||||||||||| |||| |||||||| ||||  |||||||    
T  16456687 tttaaaaatgacagaatgtcatgatcataaataagaaatatatttt-taatcctatcaagataatttctaacgtagcttatactcaagataagaattaca 16456589  T
Q  262 aaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 317  Q
    || | || |||||||| ||||   |||| |||||||||||| ||||||| ||||||    
T  16456588 aaagcaaatcaggataggataaaaaaatagtttattttatcttatctctttggtgc 16456533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27696584 - 27696540
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaacag 45  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||    
T  27696584 acattaatcctatcatgtgtttaatgtgcacatgataacaaacag 27696540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 40953583 - 40953540
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 44  Q
    ||||||||| |||||||||||||||| |||||||||||||||||    
T  40953583 acattaatcatatcatgtgtttgatgcgcacatgataacaaaca 40953540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 37246512 - 37246470
Alignment:
Q  3 attaatcttatcatgtgtttgatgtgcacatgataacaaacag 45  Q
    ||||||||||||||||||||||| ||||||||| |||||||||    
T  37246512 attaatcttatcatgtgtttgatttgcacatgaaaacaaacag 37246470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 3174271 - 3174228
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 44  Q
    ||||||||| |||||||||||||||| | |||||||||||||||    
T  3174271 acattaatcctatcatgtgtttgatgcgtacatgataacaaaca 3174228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 11656156 - 11656199
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 44  Q
    ||||||||| |||||||||||||||| | |||||||||||||||    
T  11656156 acattaatcatatcatgtgtttgatgcgtacatgataacaaaca 11656199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 15268980 - 15268937
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 44  Q
    ||||||||| |||||| |||||| ||||||||||||||||||||    
T  15268980 acattaatcctatcatatgtttggtgtgcacatgataacaaaca 15268937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 511991 - 511950
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaa 42  Q
    |||||||||||||||||||||||||  |||||||||| ||||    
T  511991 acattaatcttatcatgtgtttgattcgcacatgataccaaa 511950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43597186 - 43597145
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaa 42  Q
    ||||||||| |||||| ||||||||| |||||||||||||||    
T  43597186 acattaatcctatcatatgtttgatgggcacatgataacaaa 43597145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 150; Significance: 3e-79; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 121 - 317
Target Start/End: Complemental strand, 23404720 - 23404524
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatatttaaaaatggcagaatatcaagataataaataaggaaagatcttctaa-tcacatca 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||| ||| ||| ||||    
T  23404720 taatagaaaatacatgctataactattttaaaaatgacaatatttaaaaatggcagaatatcaagataataaattaggaataatcttttaagtca-atca 23404622  T
Q  220 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 317  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  23404621 ggataatttctaacttagcctatactcaagatataaattacaaaggaaagtcaggatatgatatggaaatggtttattttatcctatctctttggtgc 23404524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 121 - 307
Target Start/End: Complemental strand, 9315041 - 9314855
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 219  Q
    |||||||||||||||||||| | ||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||| |||||||||||| || ||    
T  9315041 taatagaaaatacatgctatcattattttaaaaatgatgatattttaaaaatggcagaatatcaagataataaataaggaatgatcttctaatctcacca 9314942  T
Q  220 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 307  Q
    |||||||||||||   ||||||||||||||||  |||||||||||||||||||||||| |||||| |||||||||| |||||||||||    
T  9314941 ggataatttctaattcagcctatactcaggattgaaattacaaaggaaagtcaggataggataggaaaatggttta-tttatcctatc 9314855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 123 - 317
Target Start/End: Original strand, 29979329 - 29979521
Alignment:
Q  123 atagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcagg 221  Q
    |||||||||||||||||| | |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||| |||||   ||||     
T  29979329 atagaaaatacatgctatcattattttaaaaatgacaatattttaaaaatggtagaatatcaagataataaataaggaatgatcttttaatc---tcaga 29979425  T
Q  222 ataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 317  Q
    ||||||||||||| ||||  ||||||||||| ||||||||||||||| |||  |||||||||| ||||||||||||||||| |||| || ||||||    
T  29979426 ataatttctaacccagccggtactcaggatagaaattacaaaggaaaatcataatatgataggaaaatggtttattttatcatatccctttggtgc 29979521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 121 - 299
Target Start/End: Original strand, 10789350 - 10789529
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 219  Q
    |||||||||||||||||||| | |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| || ||||| |||||    
T  10789350 taatagaaaatacatgctattattattttaaaaatgacaatattttaaaaatagcagaatatcaagataataaataaggaatgatattataatcccatca 10789449  T
Q  220 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttatttt 299  Q
    | ||||||| ||||| | ||||||||| ||||| ||||||||||||||| ||||||||  ||| | ||||||||||||||    
T  10789450 gaataatttataacccaacctatactctggatagaaattacaaaggaaaatcaggataaaataagaaaatggtttatttt 10789529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 127 - 317
Target Start/End: Complemental strand, 12255339 - 12255148
Alignment:
Q  127 aaaatacatgctataactattttaaaaatgacaatatttaaaaatgg-cagaatatcaagataataaataaggaaagatcttctaatcacatcaggataa 225  Q
    |||||||||||||| | |||||||||| | ||||||||| |||| || |||||||||||||||||||||||||||  ||||||||||| ||||| |||||    
T  12255339 aaaatacatgctatcattattttaaaagtaacaatattttaaaaaggacagaatatcaagataataaataaggaattatcttctaatcccatcatgataa 12255240  T
Q  226 tttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 317  Q
    ||| ||||| |||||||||||||  || |||||||||||||||| ||| ||| |||||| |||||||||||||||||| ||| || ||||||    
T  12255239 tttttaacccagcctatactcagattagaaattacaaaggaaagacagaataggataggaaaatggtttattttatcccatccctttggtgc 12255148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 121 - 307
Target Start/End: Complemental strand, 32329574 - 32329397
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatattta-aaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 219  Q
    |||||||||||||||||||| |  |||||||||||||||||||||  ||||||| |||||||||| ||||||||||||||| ||||||||||            
T  32329574 taatagaaaatacatgctatcatcattttaaaaatgacaatattttcaaaatggtagaatatcaacataataaataaggaatgatcttctaa-------- 32329483  T
Q  220 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 307  Q
      ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||| ||||    
T  32329482 --ataatttctaacccagcatatattcaggatataaattacaaaggaaagtcaggataagatatgaaaatggtttattttatcatatc 32329397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 391239 - 391308
Alignment:
Q  163 tttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaa 232  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||  |||||||||||    
T  391239 tttaaaaatggcaaaatatcaagataataaataaggaatgatcttctaatcaaatcacaataatttctaa 391308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 144 - 316
Target Start/End: Original strand, 24660744 - 24660917
Alignment:
Q  144 tattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctat 242  Q
    ||||||||||||||||| |||| |||||||  ||||||||| |||||||||||||| |  || ||||||||   |||||||| || |||||  ||| |||    
T  24660744 tattttaaaaatgacaacattttaaaaatgatagaatatcatgataataaataaggtat-attttctaatcctttcaggatagttcctaactcagcttat 24660842  T
Q  243 actcaggatataaattacaaagg-aaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtg 316  Q
    |||||||||| |||||||||||| |||  || ||||  ||||  |||||||||| |||||| ||||||| |||||    
T  24660843 actcaggatacaaattacaaaggaaaaaccaagatagtatagaaaaatggtttaatttatcatatctctttggtg 24660917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 391093 - 391134
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaa 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  391093 acattaatcttatcatgtgtttgatgtgcacatgataacaaa 391134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 12255466 - 12255423
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 44  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  12255466 acattaatcttatcatgtgtttgatgcgcacatgataacaaaca 12255423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 23404840 - 23404797
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 44  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  23404840 acattaatattatcatgtgtttgatgtgcacatgataacaaaca 23404797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10789231 - 10789275
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaacag 45  Q
    |||||||||||||||||||||||||| | ||||||||||||||||    
T  10789231 acattaatcttatcatgtgtttgatgcgaacatgataacaaacag 10789275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 9315161 - 9315118
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 44  Q
    ||||||||| |||||||||||||||| |||||||||||||||||    
T  9315161 acattaatcctatcatgtgtttgatgcgcacatgataacaaaca 9315118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 32329693 - 32329652
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaa 42  Q
    ||||||||| |||||||||||||||  |||||||||||||||    
T  32329693 acattaatcatatcatgtgtttgatacgcacatgataacaaa 32329652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 121 - 317
Target Start/End: Original strand, 37910591 - 37910787
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatatttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcag 220  Q
    |||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||| ||||||    
T  37910591 taatagaaaatacatgctatcattattttaaaaatgacaatattttaaaatggcagaatatcaaaataataaataaggaatgatcttctaatcccatcag 37910690  T
Q  221 gataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 317  Q
    |||||||||||||| ||| |||||||| ||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||| || ||||||    
T  37910691 gataatttctaacccagcttatactcatgatataaattacaaacgaaagtcaggatatgataggaaaatgatttattttatcgtatccctttggtgc 37910787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 126 - 307
Target Start/End: Original strand, 34513686 - 34513868
Alignment:
Q  126 gaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggata 224  Q
    ||||||||||| ||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||| |||||||| ||||||||||    
T  34513686 gaaaatacatgttatcattattttaaaaatgacaatattttaaaaatggcagaatatcaagataataaataagaaatgattttctaatcccatcaggata 34513785  T
Q  225 atttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 307  Q
    |||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  34513786 atttctaacccagcttatactcaggatagaaattacaaaggaaagtcaggatatgatagaaaaatggtttattttatcctatc 34513868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 121 - 307
Target Start/End: Original strand, 45499102 - 45499291
Alignment:
Q  121 taatagaaaatacat--gctataactattttaaaaatgacaatattta-aaaatggcagaatatcaagataataaataaggaaagatcttctaatcacat 217  Q
    |||||||||||||||  ||||| | ||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||| |||||||||||| |||    
T  45499102 taatagaaaatacatatgctatcattattttaaaaatgacaatattttcaaaatggcagaatatcaagataataaataaagaatgatcttctaatcccat 45499201  T
Q  218 caggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 307  Q
    || |||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  45499202 catgatagtttctaacccagcctatattcaggatataaattacaaaggaaagtcaggataggatagagaaatggtttattttatcctatc 45499291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 121 - 302
Target Start/End: Original strand, 5787228 - 5787410
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 219  Q
    |||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||| |||||    
T  5787228 taatagaaaatacatgctatcattattttaaaaatgacaatattttaaaaatggcagaatatcaagataataaataaggaatgatcttttaatcccatca 5787327  T
Q  220 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatc 302  Q
    ||||||||||||||  ||| |||||||   ||| ||||||||||||||| ||| |||| |||||| ||||| |||||||||||    
T  5787328 ggataatttctaactcagcatatactcgacatagaaattacaaaggaaaatcatgataggataggaaaatgatttattttatc 5787410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 121 - 307
Target Start/End: Original strand, 28115853 - 28116040
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 219  Q
    ||||||||||| |||||||| |  |||| |||||||||||||||| |||||||||| ||| |||||||||||||||| ||| |||||||||||  |||||    
T  28115853 taatagaaaatgcatgctatcataatttaaaaaatgacaatattttaaaaatggcaaaatctcaagataataaataaagaatgatcttctaattccatca 28115952  T
Q  220 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 307  Q
    ||||||||||||||  | | ||||||||||||| ||||||||||||||||| |||||| |||||| ||||||||||||||||| ||||    
T  28115953 ggataatttctaacacaacttatactcaggatagaaattacaaaggaaagttaggataggataggaaaatggtttattttatcttatc 28116040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 121 - 271
Target Start/End: Original strand, 44290095 - 44290246
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 219  Q
    |||||||||||||||||||| | |||||||||||||| ||||||| |||||||||||||||||||||||||||||||  || |||||||||||| ||| |    
T  44290095 taatagaaaatacatgctatcattattttaaaaatgataatattttaaaaatggcagaatatcaagataataaataattaatgatcttctaatctcatta 44290194  T
Q  220 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtc 271  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||||||    
T  44290195 ggataacttctaactcagcctatactcaggatataaattacaaaggaaagtc 44290246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 121 - 317
Target Start/End: Complemental strand, 3767970 - 3767773
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 219  Q
    |||||||||||||||||||| | ||||||||||| |||||||||| ||||||  ||||||||||||||||||||||||||| ||| |||||||| ||||     
T  3767970 taatagaaaatacatgctatcattattttaaaaacgacaatattttaaaaataacagaatatcaagataataaataaggaatgatattctaatctcatct 3767871  T
Q  220 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 317  Q
    ||||||||| ||||  ||| |||||| | ||||||||| ||||||||||||||  ||| ||||| |||||| |||||||||||||||| || ||||||    
T  3767870 ggataatttataactcagcttatacttatgatataaatgacaaaggaaagtcaaaataagatagagaaatgatttattttatcctatcactttggtgc 3767773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 125 - 307
Target Start/End: Complemental strand, 34940521 - 34940338
Alignment:
Q  125 agaaaatacatgctataactattttaaaaatgacaatattta-aaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggat 223  Q
    |||||||||||| ||| | |||||||||||||| |||||||  |||| || ||||||||||||||||||||||| |  ||| |||||||| |||||||||    
T  34940521 agaaaatacatgttatcattattttaaaaatgataatatttttaaaaaggaagaatatcaagataataaataagaattgattttctaatcccatcaggat 34940422  T
Q  224 aatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 307  Q
    ||||| |||   ||| ||||||||||||| |||||||||||||||||||||||| |||| | ||||||||||||||||||||||    
T  34940421 aatttataaatcagcatatactcaggatagaaattacaaaggaaagtcaggataggatatgaaaatggtttattttatcctatc 34940338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 121 - 265
Target Start/End: Complemental strand, 34514078 - 34513934
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 219  Q
    |||| ||||||||||||||| | |||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||| | ||     
T  34514078 taatggaaaatacatgctatcattattttaaaa-tgacaatattttaaaaatggcagaatatcaagataataaataagaaatgatcttctaatctcgtcc 34513980  T
Q  220 ggataatttctaacctagcctatactcaggatataaattacaaagg 265  Q
    ||||||||||||||  | | |||||||| |||| ||||||||||||    
T  34513979 ggataatttctaactcatcttatactcaagatagaaattacaaagg 34513934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 128 - 317
Target Start/End: Complemental strand, 17702355 - 17702165
Alignment:
Q  128 aaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataat 226  Q
    ||||||||| ||| | ||||||||||||||||| |||| |||||||| ||||||||| ||||||||||||| ||  ||||||||||   ||||||||| |    
T  17702355 aaatacatgatatcattattttaaaaatgacaacattttaaaaatggaagaatatcatgataataaataagaaattatcttctaattctatcaggatagt 17702256  T
Q  227 ttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 317  Q
    |||||||  |   ||||||||||||| |||||||||||||||| || |||| |||| | |||  |||||||||||| ||||||| ||||||    
T  17702255 ttctaactcaatttatactcaggataaaaattacaaaggaaagacaagataggataagaaaacagtttattttatcttatctctttggtgc 17702165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 165 - 317
Target Start/End: Complemental strand, 53923908 - 53923756
Alignment:
Q  165 taaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattacaaag 264  Q
    |||||||| |||||||||| |||||||| ||||||| |||||||| ||   || |||||| |||||||||    ||||| || ||| | |||||||||||    
T  53923908 taaaaatgacagaatatcatgataataattaaggaatgatcttcttatgctattaggatagtttctaacccgatctatattcgggacaaaaattacaaag 53923809  T
Q  265 gaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 317  Q
     |||  || |||||||| ||||||| |||||||||||||||||||| ||||||    
T  53923808 aaaaaccaagatatgatggggaaatagtttattttatcctatctctttggtgc 53923756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 36198624 - 36198665
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaa 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  36198624 acattaatcttatcatgtgtttgatgtgcacatgataacaaa 36198665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 44289435 - 44289478
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 44  Q
    ||||||||||| |||||||||||||| |||||||||||||||||    
T  44289435 acattaatcttctcatgtgtttgatgcgcacatgataacaaaca 44289478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 310
Target Start/End: Original strand, 54103407 - 54103470
Alignment:
Q  247 aggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctct 310  Q
    |||||| |||||| ||||  ||||||| |||||||||| ||| |||||||||||||||||||||    
T  54103407 aggataaaaattataaagataagtcagaatatgataggaaaacggtttattttatcctatctct 54103470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34940645 - 34940601
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaacag 45  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||||    
T  34940645 acattaatcatatcatgtgtttgatgcgcacatgatgacaaacag 34940601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 37910472 - 37910516
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaacag 45  Q
    ||||||||| ||||||||||||||||  |||||||||||||||||    
T  37910472 acattaatcatatcatgtgtttgatgcacacatgataacaaacag 37910516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 45498982 - 45499025
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 44  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||    
T  45498982 acattaatcatatcatgtgtttgatgcacacatgataacaaaca 45499025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 5787121 - 5787155
Alignment:
Q  11 tatcatgtgtttgatgtgcacatgataacaaacag 45  Q
    |||||||||||||||| ||||||||||||||||||    
T  5787121 tatcatgtgtttgatgcgcacatgataacaaacag 5787155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 28115542 - 28115584
Alignment:
Q  2 cattaatcttatcatgtgtttgatgtgcacatgataacaaaca 44  Q
    |||||||| ||||||||||||||||  ||||||||||||||||    
T  28115542 cattaatcatatcatgtgtttgatggccacatgataacaaaca 28115584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 121 - 317
Target Start/End: Original strand, 28622840 - 28623037
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 219  Q
    |||||||||||||||||||| | ||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||| |||||    
T  28622840 taatagaaaatacatgctatcattatttaaaaaatgacaatattttaaaaatcgcagaatatcaagataataaataaggaatgatcttctaatctcatca 28622939  T
Q  220 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 317  Q
    ||||||||||||||  ||| ||||||||||||| |||||||||||||||||||||||| |||||  |||| ||||||||||| ||||| || ||||||    
T  28622940 ggataatttctaacacagcttatactcaggataaaaattacaaaggaaagtcaggataggatagaaaaatagtttattttattctatccctttggtgc 28623037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 134 - 317
Target Start/End: Complemental strand, 49549734 - 49549551
Alignment:
Q  134 atgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaa 232  Q
    ||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||||| || |||    
T  49549734 atgctatcattattttaaaaatgacaatattttaaaaatggcagaatatcaagataataaataaggaatgatcttcaaatcccattaggataacttttaa 49549635  T
Q  233 cctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 317  Q
    || |  |||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||    
T  49549634 cccaatctatactcat-atataaattacaaaggaaagtcaggatatgatagggaaatgatttattttatcctatccctttggtgc 49549551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 155 - 317
Target Start/End: Original strand, 37346973 - 37347136
Alignment:
Q  155 tgacaatattta-aaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatat 253  Q
    |||||||||||  ||||||||||||||||| |||||||||||||||| |||||||||||| ||||| |||||||||||||| | | |||||||||||||     
T  37346973 tgacaatatttttaaaatggcagaatatcaggataataaataaggaatgatcttctaatcccatcatgataatttctaacccatcgtatactcaggatag 37347072  T
Q  254 aaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 317  Q
    ||||||||||||||| |||||||| |||||  ||||||||||||||||| |||| || ||||||    
T  37347073 aaattacaaaggaaaatcaggataggatagaaaaatggtttattttatcatatccctttggtgc 37347136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 121 - 310
Target Start/End: Complemental strand, 19910236 - 19910044
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcac--at 217  Q
    |||||||||||||||||||| | ||||||||||||   ||||||| |||||| ||| |||||||||||||| ||||||| | |||||||||||| |  ||    
T  19910236 taatagaaaatacatgctattattattttaaaaatataaatattttaaaaattgcaaaatatcaagataattaataaggcatgatcttctaatctcttat 19910137  T
Q  218 caggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctct 310  Q
     |||||||||||||||| |    ||||||||||||  ||||| ||||||||||||| ||| |||||  ||||||||||||||||| |||||||    
T  19910136 taggataatttctaacccattaaatactcaggataacaattataaaggaaagtcagtatacgatagaaaaatggtttattttatcttatctct 19910044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 163 - 301
Target Start/End: Original strand, 10306761 - 10306901
Alignment:
Q  163 tttaaaaatggcagaatatcaagataataaataaggaaagatcttcta--atcacatcaggataatttctaacctagcctatactcaggatataaattac 260  Q
    |||||||||| || ||||||| ||||||||||||| || |||||| ||  |||  |||| |||| |||||||   ||| |||||||| |||| |||||||    
T  10306761 tttaaaaatgacaaaatatcatgataataaataagaaatgatcttttataatcctatcatgatagtttctaatgcagcttatactcaagataaaaattac 10306860  T
Q  261 aaaggaaagtcaggatatgatagggaaatggtttattttat 301  Q
     ||||||| ||| ||||| ||||| ||||||||||||||||    
T  10306861 gaaggaaaatcatgatataataggaaaatggtttattttat 10306901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 37346166 - 37346209
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 44  Q
    ||||||||| |||||||||||||||| |||||||||||||||||    
T  37346166 acattaatcctatcatgtgtttgatgcgcacatgataacaaaca 37346209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 52268289 - 52268248
Alignment:
Q  4 ttaatcttatcatgtgtttgatgtgcacatgataacaaacag 45  Q
    |||||| |||||||||||||||| ||||||||||||||||||    
T  52268289 ttaatcctatcatgtgtttgatgcgcacatgataacaaacag 52268248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 19910366 - 19910323
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 44  Q
    ||||||||| |||||||||||||||| || ||||||||||||||    
T  19910366 acattaatcctatcatgtgtttgatgcgcccatgataacaaaca 19910323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 35508883 - 35508950
Alignment:
Q  241 atactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatct 308  Q
    |||| ||||||| |||||||||||| |||||   ||| |||| | |||||||||||||||||||||||    
T  35508883 atacccaggataaaaattacaaaggcaagtcgtaataggataagaaaatggtttattttatcctatct 35508950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 10306616 - 10306660
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatg-ataacaaaca 44  Q
    ||||||||| ||||| |||||||||||||||||| ||||||||||    
T  10306616 acattaatcatatcacgtgtttgatgtgcacatgaataacaaaca 10306660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 121 - 317
Target Start/End: Original strand, 18503004 - 18503203
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 219  Q
    |||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| |||||||||||| |||||    
T  18503004 taatagaaaatacatgctatcattattttaaaaatgacaatatttcaaaaatggcagaatatcaagataattaataaagaatgatcttctaatcccatca 18503103  T
Q  220 ggataatttctaacctagcc--tatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 317  Q
    | ||||||||||||  ||||  |||||||| |||| |||||||||| |||| |||||||| |||||| ||||||||||||||||||||||||| ||||||    
T  18503104 gcataatttctaacacagcctatatactcaagatagaaattacaaatgaaaatcaggataggataggaaaatggtttattttatcctatctctttggtgc 18503203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 121 - 317
Target Start/End: Original strand, 15672890 - 15673077
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatattta-aaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 219  Q
    |||||||||||||||||||| | |||||||||||| |||||||||  ||||||  |||||||||||||||||||||||||| ||||||||||||   |||    
T  15672890 taatagaaaatacatgctatcattattttaaaaataacaatattttcaaaatgttagaatatcaagataataaataaggaatgatcttctaatc---tca 15672986  T
Q  220 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 317  Q
    ||||||||||||||| |||||||       ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  15672987 ggataatttctaacccagcctat-------atataaattgcaaaggaaagtcaggatatgataggaaaatggtttattttatcctatctctttggtgc 15673077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 121 - 302
Target Start/End: Complemental strand, 34703272 - 34703087
Alignment:
Q  121 taatagaaaatacat--gctataactattttaaaaatgacaatattta-aaaatggcagaatatcaa-gataataaataaggaaagatcttctaatcaca 216  Q
    |||||||||||||||  ||||| | ||||||||||||||||||||||  ||||| | |||||||||| |||||||||||||||| |||||||||||| ||    
T  34703272 taatagaaaatacatatgctatcattattttaaaaatgacaatattttcaaaatagtagaatatcaaagataataaataaggaatgatcttctaatccca 34703173  T
Q  217 tcaggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatc 302  Q
    |||||||| ||||||||| | ||||| |||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  34703172 tcaggatagtttctaacccaacctatcctcatgatataaattacaaaggaaagtcaggatatgataggaaaatagtttattttatc 34703087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 34866371 - 34866447
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatatt-taaaaatggcagaatatcaagataataaataa 196  Q
    ||||||||||||||||| || | |||||||||||| |||||||| |||||||||||||||||||| |||||||||||    
T  34866371 taatagaaaatacatgcaatcattattttaaaaataacaatattataaaaatggcagaatatcaatataataaataa 34866447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 144 - 317
Target Start/End: Complemental strand, 28429154 - 28428979
Alignment:
Q  144 tattttaaaaatgacaa-tattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagccta 241  Q
    |||||||||||||| || ||||| |||||||||||||||||| |||||||| ||||||| ||  || |||||  || ||||||||||| |||||| | ||    
T  28429154 tattttaaaaatgagaaatattttaaaaatggcagaatatcatgataataactaaggaatgaatttataatcctattaggataatttcaaacctaacata 28429055  T
Q  242 tactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 317  Q
    || | |  |||||||||||||||  |||| |||||| |||    ||||  ||||||||||||||| ||| ||||||    
T  28429054 tatttaaaatataaattacaaagataagttaggataagattacaaaataatttattttatcctatttctttggtgc 28428979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 307
Target Start/End: Complemental strand, 6110255 - 6110188
Alignment:
Q  240 tatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 307  Q
    ||||||||||||||||||||||||||||||| | |||| |||||  ||||| ||||||||||| ||||    
T  6110255 tatactcaggatataaattacaaaggaaagttaagataggatagaaaaatgatttattttatcttatc 6110188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 310
Target Start/End: Complemental strand, 34183262 - 34183115
Alignment:
Q  163 tttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattacaa 262  Q
    |||||||| || ||||||||| | |||||| ||||||| ||  || |||| |  ||||| ||||||   ||  ||| ||||||| ||||| |||||| ||    
T  34183262 tttaaaaacggaagaatatcatggtaataagtaaggaatgaatttgtaataatgtcagggtaattttatactaagcttatactccggataaaaattataa 34183163  T
Q  263 aggaaagtcaggatatgatagggaaatggtttattttatcctatctct 310  Q
    ||| ||||||||||| |||||  |||| ||||||||||||||||||||    
T  34183162 aggcaagtcaggataggatagaaaaatagtttattttatcctatctct 34183115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 310
Target Start/End: Complemental strand, 34203851 - 34203704
Alignment:
Q  163 tttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattacaa 262  Q
    |||||||| || ||||||||| | |||||| ||||||| ||  || |||| |  ||||| ||||||   ||  ||| ||||||| ||||| |||||| ||    
T  34203851 tttaaaaacggaagaatatcatggtaataagtaaggaatgaatttgtaataatgtcagggtaattttatactaagcttatactccggataaaaattataa 34203752  T
Q  263 aggaaagtcaggatatgatagggaaatggtttattttatcctatctct 310  Q
    ||| ||||||||||| |||||  |||| ||||||||||||||||||||    
T  34203751 aggcaagtcaggataggatagaaaaatagtttattttatcctatctct 34203704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 34866251 - 34866294
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 44  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  34866251 acattaatcttatcatgtgtttgatgcgcacatgataacaaaca 34866294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 17508667 - 17508733
Alignment:
Q  144 tattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttct 209  Q
    |||| |||||||||||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||    
T  17508667 tattataaaaatgacaacattttaaaaatggcagaacatcatgataataaataaggaatgatcttct 17508733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 17544547 - 17544481
Alignment:
Q  144 tattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttct 209  Q
    |||| |||||||||||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||    
T  17544547 tattataaaaatgacaacattttaaaaatggcagaacatcatgataataaataaggaatgatcttct 17544481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 6110302 - 6110260
Alignment:
Q  163 tttaaaaatggcagaatatcaagataataaataaggaaagatc 205  Q
    |||||||||| ||||||||||||||||||||||||||| ||||    
T  6110302 tttaaaaatgacagaatatcaagataataaataaggaatgatc 6110260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 298
Target Start/End: Original strand, 3480695 - 3480832
Alignment:
Q  161 tatttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattac 260  Q
    ||||| ||||||  ||||||| | |||||||||||||||| ||  | |||||| ||||| ||||  ||||||| |||  ||| |||| |||| |||||||    
T  3480695 tattttaaaatgaaagaatattatgataataaataaggaatgaattgctaatctcatcaagatagattctaacatagtttatgctcaagataaaaattac 3480794  T
Q  261 aaaggaaagtcaggatatgatagggaaatggtttattt 298  Q
    || || || ||| |||| |||||| ||||| |||||||    
T  3480795 aatggcaaatcacgataagataggaaaatgatttattt 3480832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 317
Target Start/End: Complemental strand, 25102757 - 25102676
Alignment:
Q  236 agcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 317  Q
    ||||||||||||||||| |||||||||| | || ||| |||| |||| | ||||  ||||||||||||||||| | ||||||    
T  25102757 agcctatactcaggataaaaattacaaaagtaattcacgataggatacgaaaataatttattttatcctatctatttggtgc 25102676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 121 - 317
Target Start/End: Original strand, 40619623 - 40619820
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 219  Q
    ||||| |||||||||||||| | |||||||||||||||||||||| ||||||  |||||||||||| |||||||||||||| |||||||||||| ||| |    
T  40619623 taataaaaaatacatgctatcattattttaaaaatgacaatattttaaaaataacagaatatcaaggtaataaataaggaatgatcttctaatcccataa 40619722  T
Q  220 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 317  Q
    | ||||||||||||| | ||||||||||||||| ||||||| ||||||||||||||||||||||  ||||||||||||||||| |||| || ||||||    
T  40619723 gtataatttctaacccaacctatactcaggatagaaattacgaaggaaagtcaggatatgatagaaaaatggtttattttatcatatccctttggtgc 40619820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 121 - 302
Target Start/End: Original strand, 13996080 - 13996262
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatattta-aaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 219  Q
    |||||| ||||||||||||| | ||||||||||||||||||||||  ||||||| |||||||||| ||||||||||||||| |||||||||||| |||||    
T  13996080 taataggaaatacatgctatcattattttaaaaatgacaatatttttaaaatggaagaatatcaaaataataaataaggaatgatcttctaatcccatca 13996179  T
Q  220 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatc 302  Q
    ||||||||||||||| | | ||||||||||||| ||||||||||||||||||||||||||||||  | ||| |||||||||||    
T  13996180 ggataatttctaacccaacttatactcaggatagaaattacaaaggaaagtcaggatatgatagaaacatgatttattttatc 13996262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 121 - 317
Target Start/End: Complemental strand, 41595475 - 41595278
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 219  Q
    |||||||||||||||||||| | |||||||||||||||||||||| |||||||  ||||||||||||||||||||||  || |||||||||||| |||||    
T  41595475 taatagaaaatacatgctatcattattttaaaaatgacaatattttaaaaatgaaagaatatcaagataataaataaaaaatgatcttctaatcccatca 41595376  T
Q  220 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 317  Q
    ||||||||||||||  | | ||||||||||||| ||||||||| |||||||||| |||||||||  | |||||||||||||||| |||||| ||||||    
T  41595375 ggataatttctaactcaacttatactcaggatagaaattacaatggaaagtcagaatatgatagaaatatggtttattttatccaatctctttggtgc 41595278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 122 - 307
Target Start/End: Original strand, 13349429 - 13349615
Alignment:
Q  122 aatagaaaatacatgctataactattttaaaaatgacaatatttaaaa-atggcagaatatcaagataataaataaggaaagatcttctaatcacatcag 220  Q
    |||||||||||||| |||| | |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  13349429 aatagaaaatacattctatcattattttaaaaatgataatatttaaaaaatggcagaatatcaagataataaataaggaatgatcttctaatcgcatcag 13349528  T
Q  221 gataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 307  Q
    |||||||||||||  | | |||||| |||||| ||||||||||||||||| |||| | |||| | | || |||||||||||||||||    
T  13349529 gataatttctaactcatcatatacttaggatagaaattacaaaggaaagttaggagaggataagaatattgtttattttatcctatc 13349615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 121 - 284
Target Start/End: Complemental strand, 19695918 - 19695756
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 219  Q
    |||||||||||| ||||||| | |||||||||| ||||||||||| |||||||  |||||||||||||||||||||||| | |||||||||||  |||||    
T  19695918 taatagaaaatatatgctatcattattttaaaagtgacaatattttaaaaatg--agaatatcaagataataaataagggatgatcttctaattccatca 19695821  T
Q  220 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagg 284  Q
    ||||||||||||||  ||| |||||||| |||| ||||||||||| |||||| ||||| ||||||    
T  19695820 ggataatttctaactcagcttatactcaagatagaaattacaaagaaaagtcgggataggatagg 19695756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 121 - 307
Target Start/End: Complemental strand, 27338944 - 27338768
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 219  Q
    |||||||||||||||||||| | |||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| ||| || ||||| |||||    
T  27338944 taatagaaaatacatgctatcattattttaaaaatgataatattttaaaaatgacagaatatcaagataataaataaggaatgatattataatcccatca 27338845  T
Q  220 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatc 307  Q
    |||| |||||||           ||||||  || |||||||||||||||||||||||| |||||  ||||||||||||||||| ||||    
T  27338844 ggatcatttcta-----------actcagcctaaaaattacaaaggaaagtcaggataggatagaaaaatggtttattttatcatatc 27338768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 207 - 317
Target Start/End: Complemental strand, 37485746 - 37485638
Alignment:
Q  207 tctaatcacatcaggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctat 306  Q
    ||||||| |||||||||||||||||||  ||| |||  ||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  37485746 tctaatcccatcaggataatttctaactcagcatat--tcatgatagaaattacaaaggaaagtcaggatatgataggaaaatggtttattttatcatat 37485649  T
Q  307 ctctgtggtgc 317  Q
    || | ||||||    
T  37485648 ctttttggtgc 37485638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 40619505 - 40619546
Alignment:
Q  3 attaatcttatcatgtgtttgatgtgcacatgataacaaaca 44  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  40619505 attaatcttatcatgtgtttgatgtgcacatgataacaaaca 40619546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 37485927 - 37485884
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 44  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  37485927 acattaatcatatcatgtgtttgatgtgcacatgataacaaaca 37485884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 283
Target Start/End: Original strand, 15665348 - 15665492
Alignment:
Q  144 tattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctat 242  Q
    ||||||||||||| ||| |||| ||||||| || || |||| |||||||||||| |||  ||||||||||   |||||||||||||| |||| | |||||    
T  15665348 tattttaaaaatgtcaacattttaaaaatgacaaaaaatcatgataataaataaagaattatcttctaattctatcaggataatttccaacccaacctat 15665447  T
Q  243 act----caggatataaattacaaaggaaagtcaggatatgatag 283  Q
    ||     || |||| ||||||||||||||  |||| |||||||||    
T  15665448 acctacccatgatacaaattacaaaggaagatcagaatatgatag 15665492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 19696038 - 19695995
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 44  Q
    ||||||||||||| |||||||||||||||||||||||| |||||    
T  19696038 acattaatcttattatgtgtttgatgtgcacatgataataaaca 19695995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 27339065 - 27339023
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaac 43  Q
    ||||||||| |||||||||||||||| ||||||||||||||||    
T  27339065 acattaatcatatcatgtgtttgatgcgcacatgataacaaac 27339023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 299
Target Start/End: Complemental strand, 34355975 - 34355853
Alignment:
Q  177 aatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggat 276  Q
    ||||||| |||||||||||||||| ||  ||||||||  ||| || |||||| ||| | | | ||||||| ||||| |||||||||||| |||||||  |    
T  34355975 aatatcatgataataaataaggaatgaatttctaatcctatctgggtaatttataatccaacttatactcgggataaaaattacaaaggcaagtcagatt 34355876  T
Q  277 atgatagggaaatggtttatttt 299  Q
    | |||||| |||| |||| ||||    
T  34355875 acgataggaaaatagtttttttt 34355853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 37485807 - 37485758
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatatttaaaaa 170  Q
    |||||||||||||||| ||| | |||||||||||||| ||||||||||||    
T  37485807 taatagaaaatacatgttatcattattttaaaaatgaaaatatttaaaaa 37485758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 13995547 - 13995590
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 44  Q
    ||||||||| |||||||||||||||| ||||||||||| |||||    
T  13995547 acattaatcctatcatgtgtttgatgcgcacatgataagaaaca 13995590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 41595594 - 41595551
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 44  Q
    ||||||||| ||| ||||||||||||||||||| ||||||||||    
T  41595594 acattaatcctattatgtgtttgatgtgcacataataacaaaca 41595551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 121 - 302
Target Start/End: Original strand, 40700954 - 40701135
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatattta-aaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 219  Q
    |||||||||||||||||||| | || ||||||| |||||||||||  |||||| || ||||||||||| |||||||||||| |||||| |||||  ||||    
T  40700954 taatagaaaatacatgctatcattaatttaaaa-tgacaatatttttaaaatgtcataatatcaagatgataaataaggaatgatcttataatcctatca 40701052  T
Q  220 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatc 302  Q
    ||||||||||||||  ||| ||||||||||||| ||||||||||||||||||||||||||| ||  |||||||||||||||||    
T  40701053 ggataatttctaacacagcttatactcaggataaaaattacaaaggaaagtcaggatatgacagaaaaatggtttattttatc 40701135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 121 - 317
Target Start/End: Original strand, 28457711 - 28457903
Alignment:
Q  121 taatagaaaatacatgctataactattttaaaaatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatca 219  Q
    ||||||||||| |||||||| | |||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||| |||||||||||| |||||    
T  28457711 taatagaaaatgcatgctatcattattttaaaaatgacaatattttaaaaatggcaatatatcaagataataaataaggaatgatcttctaatcccatca 28457810  T
Q  220 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 317  Q
    |||||| |||||||| ||      ||||||||| |||||||||||||||||  ||||| |||||  ||||||||||||||||| |||| || ||||||    
T  28457811 ggataacttctaacccag-----tctcaggatagaaattacaaaggaaagttgggataagatagaaaaatggtttattttatcatatcactttggtgc 28457903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 163 - 307
Target Start/End: Original strand, 21748365 - 21748509
Alignment:
Q  163 tttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattacaa 262  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||| ||||| |||||||||| |||||| |||||||||    
T  21748365 tttaaaaatggcagaatatcaagataataaataaggaatggtcttctaatctcatcaggataatttttaacccagcctatacttaggatagaaattacaa 21748464  T
Q  263 aggaaagtcaggatatgatagggaaatggtttattttatcctatc 307  Q
    |||||| |||  ||| |||||| |||||||| |||||||| ||||    
T  21748465 aggaaaatcataataggataggaaaatggttaattttatcatatc 21748509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 188 - 302
Target Start/End: Complemental strand, 33072790 - 33072676
Alignment:
Q  188 aataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaa 287  Q
    ||||||||||||| |||||| |||||  |||| |||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||| ||    
T  33072790 aataaataaggaatgatcttataatcctatcatgataatttctaacctagcctatactcaggatagaaattacaaaggaaacttaggatatgataggaaa 33072691  T
Q  288 atggtttattttatc 302  Q
    |||||||||||||||    
T  33072690 atggtttattttatc 33072676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 301
Target Start/End: Original strand, 45853076 - 45853214
Alignment:
Q  163 tttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggatataaattacaa 262  Q
    |||||||||| |||||||||| |||||||||||||||| ||| || |||||  |||| ||||  || ||||| |||||||||||| |||| |||||||||    
T  45853076 tttaaaaatgacagaatatcacgataataaataaggaatgatattttaatccaatcaagatagattataacccagcctatactcacgataaaaattacaa 45853175  T
Q  263 aggaaagtcaggatatgatagggaaatggtttattttat 301  Q
     |||||||||  ||| || | | ||||||||||||||||    
T  45853176 tggaaagtcataataggaaaagaaaatggtttattttat 45853214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 153 - 301
Target Start/End: Original strand, 21153349 - 21153498
Alignment:
Q  153 aatgacaatatttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcac-atcaggataatttctaacctagcctatactcaggat 251  Q
    |||||||| ||||||||| | ||||||||||   ||||||| |||||| ||  || |||| |  |||| |||||||||||||  ||||||||||||||||    
T  21153349 aatgacaacatttaaaaacgacagaatatcattgtaataaacaaggaatgaatttttaattatgatcaagataatttctaactcagcctatactcaggat 21153448  T
Q  252 ataaattacaaaggaaagtcaggatatgatagggaaatggtttattttat 301  Q
    | || |||| || | |||||||||||||||||  ||||||| ||||||||    
T  21153449 aaaagttacgaaagcaagtcaggatatgatagaaaaatggtctattttat 21153498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 310
Target Start/End: Original strand, 7818444 - 7818533
Alignment:
Q  220 ggataatttctaacctagcctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctct 310  Q
    ||||||||||||||| |  ||||| | |||||| ||||||||||||||||| || ||| |||||  |||| ||||||||||| ||||||||    
T  7818444 ggataatttctaacccaatctatatttaggatagaaattacaaaggaaagttagaataggatagtaaaat-gtttattttattctatctct 7818533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 33072848 - 33072806
Alignment:
Q  164 ttaaaaatggcagaatatcaagataataaataaggaaagatct 206  Q
    ||||||||||||||||||||||||||||||||| ||| |||||    
T  33072848 ttaaaaatggcagaatatcaagataataaataatgaatgatct 33072806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 270
Target Start/End: Complemental strand, 46663405 - 46663287
Alignment:
Q  153 aatgacaatattt-aaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataatttctaacctagcctatactcaggat 251  Q
    ||||||||||||| |||||||| |  |||||| | ||||||||| |||| ||  || ||||||  |||  ||| ||||||||||||| ||||||||||||    
T  46663405 aatgacaatattttaaaaatggtattatatcatggtaataaatatggaatgaatttataatcatgtcattatagtttctaacctagcttatactcaggat 46663306  T
Q  252 ataaattacaaaggaaagt 270  Q
    | |||||| ||||| ||||    
T  46663305 aaaaattaaaaaggcaagt 46663287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 54819666 - 54819711
Alignment:
Q  1 acattaatcttatcatgtgtttgatgt-gcacatgataacaaacag 45  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||    
T  54819666 acattaatcctatcatgtgtttgatgtcgcacatgataacaaacag 54819711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 40700834 - 40700877
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaaca 44  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||    
T  40700834 acattaatcctatcatgtgtttgatgcacacatgataacaaaca 40700877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 21495265 - 21495228
Alignment:
Q  163 tttaaaaatggcagaatatcaagataataaataaggaa 200  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  21495265 tttaaaaatgacagaatatcatgataataaataaggaa 21495228  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 41864798 - 41864839
Alignment:
Q  1 acattaatcttatcatgtgtttgatgtgcacatgataacaaa 42  Q
    |||||||||||||||||| |||||||  ||||||||||||||    
T  41864798 acattaatcttatcatgtatttgatgcacacatgataacaaa 41864839  T

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Target: scaffold0957 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 317
Target Start/End: Complemental strand, 1885 - 1693
Alignment:
Q  128 aaatacatgctataactattttaaaaatgacaata-tttaaaaatggcagaatatcaagataataaataaggaaagatcttctaatcacatcaggataat 226  Q
    ||||||| | ||||| ||||||||||||||||| | ||||||||||  ||||||||| || |||||||||  |  ||  ||||||    |||| |||| |    
T  1885 aaatacacgatataattattttaaaaatgacaaaattttaaaaatgatagaatatcatgaaaataaataacaactgaatttctaaatttatcaagatagt 1786  T
Q  227 ttctaacctagc--ctatactcaggatataaattacaaaggaaagtcaggatatgatagggaaatggtttattttatcctatctctgtggtgc 317  Q
    |||||||||| |   |||| ||| |||| ||||||||||   |||| |||||| |||||  ||||| ||||||| ||||||||||| ||||||    
T  1785 ttctaacctaacagatatagtcatgataaaaattacaaaaccaagttaggataagatagaaaaatgatttatttcatcctatctctttggtgc 1693  T

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