View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21469_high_27 (Length: 318)
Name: NF21469_high_27
Description: NF21469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21469_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 30 - 308
Target Start/End: Original strand, 20291866 - 20292144
Alignment:
| Q |
30 |
caaaaattaaaggagttcaaccctagttggtggtggtagggatcaaattgaaatttttattttgtttgggactaacaaagattaacgccataaacaaaga |
129 |
Q |
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| T |
20291866 |
caaaaattaaaagagttcagccctagatggtggtggtagggatcaaattgaaatttttattttgtttgggactaacaaagattaacgccataaacaaaga |
20291965 |
T |
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| Q |
130 |
tttgtatggtttcccttggaaacctaatttcacctccttctccctgcgcagtcgggatctcagcaatcacactgccttaatttctctcgcgtctcaccat |
229 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
20291966 |
tttgtatggttttccctggaaacctaatttcacctccttctcctggcgcagtcgggatctcagcaatcacactgccctaatttctctcgcgtctcaccat |
20292065 |
T |
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| Q |
230 |
gcaaggtacgtaaatagattagatcatattggtttttcccgcacaccattctcttttgattaaaaaattcacttctctg |
308 |
Q |
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| T |
20292066 |
gcaaggtacgtaaatagatcagatcatattacttttttccgcacaccattctcttttgattaaaaaattcacttctctg |
20292144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 30 - 307
Target Start/End: Original strand, 20304723 - 20305003
Alignment:
| Q |
30 |
caaaaattaaaggagttcaaccctagttggtggtggtagggatcaaattgaaatttttattttgtttgggactaacaaagattaacgccataaacaaaga |
129 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20304723 |
caaaaattaaaggagttcagccctagttggtggtagtagggatcaaattgaaatttttattttgtttgggactaacaaagattaactccataaacaaaga |
20304822 |
T |
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| Q |
130 |
tttgtatggtttcccttggaaacctaatttcacctc---cttctccctgcgcagtcgggatctcagcaatcacactgccttaatttctctcgcgtctcac |
226 |
Q |
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| T |
20304823 |
tttgtatggtttcccctggaaacctaatttcacctccttcttctcccggcgcagtcgggatctcagcaatcacactgccctaatttctctcacgtctcac |
20304922 |
T |
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| Q |
227 |
catgcaaggtacgtaaatagattagatcatattggtttttcccgcacaccattctcttttgattaaaaaattcacttctct |
307 |
Q |
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|||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
20304923 |
catgcaaggtacgtaaatagatcagatcatattacttttttccgcacaccattctcttttgattaaaaaattcacttctct |
20305003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 30 - 307
Target Start/End: Original strand, 20309127 - 20309407
Alignment:
| Q |
30 |
caaaaattaaaggagttcaaccctagttggtggtggtagggatcaaattgaaatttttattttgtttgggactaacaaagattaacgccataaacaaaga |
129 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20309127 |
caaaaattaaaggagttcagccctagttggtggtagtagggatcaaattgaaatttttattttgtttgggactaacaaagattaactccataaacaaaga |
20309226 |
T |
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| Q |
130 |
tttgtatggtttcccttggaaacctaatttcacctc---cttctccctgcgcagtcgggatctcagcaatcacactgccttaatttctctcgcgtctcac |
226 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
20309227 |
tttgtatggtttcccctggaaacctaatttcacctccttcttctcccggcgcagtcgggatctcagcaatcacactgccctaatttctctcacgtctcac |
20309326 |
T |
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| Q |
227 |
catgcaaggtacgtaaatagattagatcatattggtttttcccgcacaccattctcttttgattaaaaaattcacttctct |
307 |
Q |
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| T |
20309327 |
catgcaaggtacgtaaatagatcagatcatattacttttttccgcacaccattctcttttgattaaaaaattcacttctct |
20309407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 30 - 308
Target Start/End: Original strand, 20300341 - 20300622
Alignment:
| Q |
30 |
caaaaattaaaggagttcaaccctagttggtggtggtagggatcaaattgaaatttttattttgtttgggactaacaaagattaacgccataaacaaaga |
129 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20300341 |
caaaaattaaaggagttcagccctagttggtggtagtagggatcaaattgaaatttttattttgtttgggactaacaaagattaactccataaacaaaga |
20300440 |
T |
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| Q |
130 |
tttgtatggtttcccttggaaacctaatttcacctc---cttctccctgcgcagtcgggatctcagcaatcacactgccttaatttctctcgcgtctcac |
226 |
Q |
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|| |||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
20300441 |
ttggtatggattcccctggaaacctaatttcacctccttcttctcccggcgcagtcgggatctcagcaatcacactgccctaatttctctcgcgtctcac |
20300540 |
T |
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| Q |
227 |
catgcaaggtacgtaaatagattagatcatattggtttttcccgcacaccattctcttttgattaaaaaattcacttctctg |
308 |
Q |
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|||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
20300541 |
catgcaaggtacgtaaatagatcagatcatattactttttttcgcacaccattctcttttgattaaaaaattcacttgtctg |
20300622 |
T |
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