View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21469_high_29 (Length: 317)
Name: NF21469_high_29
Description: NF21469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21469_high_29 |
 | |
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| [»] chr7 (1 HSPs) |
| |
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| [»] chr5 (9 HSPs) |
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| [»] chr1 (3 HSPs) |
| |
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| [»] chr2 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 2 - 317
Target Start/End: Complemental strand, 29623354 - 29623039
Alignment:
| Q |
2 |
gtggagaagcagagagtttcattgcagaatgtaaatctctaggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgatta |
101 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29623354 |
gtggagcagcaaagagtttcattgcagaatgtaaatctctaggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgatta |
29623255 |
T |
|
| Q |
102 |
taaaggtgaagatttcaaggctattgtttttgagttcatgcctaatatgagtctagaaaagatgttgcacgataatgaaggatctggaagccataatctc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29623254 |
taaaggtgaagatttcaaggctattgtttttgagttcatgcctaatatgagtctagaaaagatgttgcacgataatgaaggatctggaagccataatctc |
29623155 |
T |
|
| Q |
202 |
aacctcacacaaaggatagacattgctcttgatgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagc |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29623154 |
aacctcacacaaaggatagacattgctcttgatgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagc |
29623055 |
T |
|
| Q |
302 |
caagcaatgttcttct |
317 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
29623054 |
caagcaatgttcttct |
29623039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 43 - 317
Target Start/End: Original strand, 35754819 - 35755093
Alignment:
| Q |
43 |
ggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgattataaaggtgaagatttcaaggctattgtttttgagttcatgc |
142 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35754819 |
ggaaagatgaagcaccggaatcttgtcaagattttaacttgttgttcaagtgttgattataatggtgaagatttcaaagctattgtttttgagttcatgt |
35754918 |
T |
|
| Q |
143 |
ctaatatgagtctagaaaagatgttgcacgataatgaaggatctggaagccataatctcaacctcacacaaaggatagacattgctcttgatgtagctca |
242 |
Q |
| |
|
| ||| |||||| |||||| ||||||||||||||||||| || |||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35754919 |
caaatgggagtcttgaaaagttgttgcacgataatgaagggtcaggaaattttaatctcaacctcacacaaaggttagacattgctcttgatgtagctca |
35755018 |
T |
|
| Q |
243 |
tgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttcttct |
317 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35755019 |
tgcattggattatcttcacaatgatacagaacaagtcgtagttcactgtgatattaagccaagcaatgttcttct |
35755093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 2 - 317
Target Start/End: Original strand, 35385976 - 35386291
Alignment:
| Q |
2 |
gtggagaagcagagagtttcattgcagaatgtaaatctctaggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgatta |
101 |
Q |
| |
|
|||||| |||| |||||||||| |||||||| || |||| ||||||||||| |||| ||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
35385976 |
gtggagcagcaaagagtttcatggcagaatgcaatgctctgggaaagatgaagcaccagaatcttgtcaaggtcctaacctgttgttcaagtgttgatta |
35386075 |
T |
|
| Q |
102 |
taaaggtgaagatttcaaggctattgtttttgagttcatgcctaatatgagtctagaaaagatgttgcacgataatgaaggatctggaagccataatctc |
201 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| | ||| |||||| |||||| | |||||| |||||||||| |||| || ||||||||| |
|
|
| T |
35386076 |
taagggtgaagatttcaaggctattgtttttgagttcatgtcaaatgagagtcttgaaaagtttttgcacaataatgaagggtctgaaaatcataatctc |
35386175 |
T |
|
| Q |
202 |
aacctcacacaaaggatagacattgctcttgatgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagc |
301 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||| ||| ||||| ||||||||||||||| |||||| |
|
|
| T |
35386176 |
aacctcacataaaggttagacattgctcttgatgtagctcatgcacttgattatcttcacaatgatacagagcaagccgtagttcactgtgatcttaagc |
35386275 |
T |
|
| Q |
302 |
caagcaatgttcttct |
317 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
35386276 |
caagcaacgttcttct |
35386291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 14 - 317
Target Start/End: Original strand, 35410649 - 35410952
Alignment:
| Q |
14 |
agagtttcattgcagaatgtaaatctctaggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgattataaaggtgaaga |
113 |
Q |
| |
|
|||||||||| || ||||| || || || ||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
35410649 |
agagtttcatggcggaatgcaatgctttaagaaagatgaggcaccgtaatcttgtcaaaatcctaacgtgttgttcaagtgttgattataatggtgaaga |
35410748 |
T |
|
| Q |
114 |
tttcaaggctattgtttttgagttcatgcctaatatgagtctagaaaagatgttgcacgataatgaaggatctggaagccataatctcaacctcacacaa |
213 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| || |||||||||| | ||||| ||||| ||||| |||| || ||||||||||||||||||||| |
|
|
| T |
35410749 |
gttcaaggctattgtttttgagttaatgcctaatgggaatctagaaaagtttttgcatgataacgaagggtctgaaaatcataatctcaacctcacacaa |
35410848 |
T |
|
| Q |
214 |
aggatagacattgctcttgatgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttc |
313 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| | ||||||||||||||||| | ||| ||||||||||||||||||||| ||||||| ||||| |||| |
|
|
| T |
35410849 |
aggttagacattgctcttgatgtagctcatgcacttgattatcttcacaatgagacagagcaagctgtagttcactgtgatcttaagccgagcaacgttc |
35410948 |
T |
|
| Q |
314 |
ttct |
317 |
Q |
| |
|
|||| |
|
|
| T |
35410949 |
ttct |
35410952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 2 - 317
Target Start/End: Original strand, 35366824 - 35367139
Alignment:
| Q |
2 |
gtggagaagcagagagtttcattgcagaatgtaaatctctaggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgatta |
101 |
Q |
| |
|
|||||| |||| ||||||||| ||||||||| || |||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35366824 |
gtggagcagcaaagagtttcaaagcagaatgtgaagctctaggaaagatgaagcaccgaaatcttgtcaagatcctaacttgttgttcaagcattgatta |
35366923 |
T |
|
| Q |
102 |
taaaggtgaagatttcaaggctattgtttttgagttcatgcctaatatgagtctagaaaagatgttgcacgataatgaaggatctggaagccataatctc |
201 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||| | |||| ||||| ||||| ||||||| ||||||||| |
|
|
| T |
35366924 |
taagggtgaagagttcaaggctattgtttttgagttcatgcctaagggaagtctagaaaagcttctgcatgataacgaagggtctggaaatcataatctc |
35367023 |
T |
|
| Q |
202 |
aacctcacacaaaggatagacattgctcttgatgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagc |
301 |
Q |
| |
|
| ||||| ||| || | ||||||||||||||||||||||||||| | |||||||||||||||| || ||| || | |||||||||||||| |||||| |
|
|
| T |
35367024 |
agcctcagacacagagttgacattgctcttgatgtagctcatgcactcgattatcttcacaatggtacagagaaatccatagttcactgtgatattaagc |
35367123 |
T |
|
| Q |
302 |
caagcaatgttcttct |
317 |
Q |
| |
|
| ||||| |||||||| |
|
|
| T |
35367124 |
cgagcaacgttcttct |
35367139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 2 - 317
Target Start/End: Original strand, 35376370 - 35376691
Alignment:
| Q |
2 |
gtggagaagcagagagtttcattgcagaatgtaaatctctaggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgatta |
101 |
Q |
| |
|
|||||| |||| ||||||||||||| ||||| || || ||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35376370 |
gtggagcagcaaagagtttcattgcggaatgcaatgctttaggaaagatgaagcaccgtaatcttgtcaaaatcctaacttgttgttcaagtgttgatta |
35376469 |
T |
|
| Q |
102 |
taaaggtgaagatttcaaggctattgtttttgagttcatgcctaatatgagtctagaaaagatgttgcacgataatgaag-----ga-tctggaagccat |
195 |
Q |
| |
|
||| ||||||||||| ||||| |||||||||||||||||||||| | || ||| ||||| ||||||| | ||| |||| || ||| ||| | |
|
|
| T |
35376470 |
taatggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctggaaaacctgttgcatggtaacgaagatcatgagtctagaaatctg |
35376569 |
T |
|
| Q |
196 |
aatctcaacctcacacaaaggatagacattgctcttgatgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatg |
295 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||||||| |
|
|
| T |
35376570 |
aatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatg |
35376669 |
T |
|
| Q |
296 |
ttaagccaagcaatgttcttct |
317 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
35376670 |
ttaagccaagcaatgttcttct |
35376691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 317
Target Start/End: Original strand, 35423629 - 35423950
Alignment:
| Q |
2 |
gtggagaagcagagagtttcattgcagaatgtaaatctctaggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgatta |
101 |
Q |
| |
|
|||||| |||| |||||||||| | ||||| || || ||||||||||||| ||||| |||||||| || ||||||||||| ||||||||||||||||| |
|
|
| T |
35423629 |
gtggagcagcaaagagtttcatggtggaatgcaatgctttaggaaagatgaagcaccgtaatcttgtgaaaatcctaacttgctgttcaagtgttgatta |
35423728 |
T |
|
| Q |
102 |
taaaggtgaagatttcaaggctattgtttttgagttcatgcctaatatgagtctagaaaagatgttgcacgataatgaag-----ga-tctggaagccat |
195 |
Q |
| |
|
||| ||||||||||| ||||| |||||||||||||||||||||| | || ||||||||| ||||||| | ||| |||| || ||| ||| | |
|
|
| T |
35423729 |
taatggtgaagattttaaggccattgtttttgagttcatgcctagtgggaatctagaaaacctgttgcatggtaacgaagatcatgagtctagaaatctg |
35423828 |
T |
|
| Q |
196 |
aatctcaacctcacacaaaggatagacattgctcttgatgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatg |
295 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||||||| |
|
|
| T |
35423829 |
aatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatg |
35423928 |
T |
|
| Q |
296 |
ttaagccaagcaatgttcttct |
317 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
35423929 |
ttaaaccaagcaatgttcttct |
35423950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 170
Target Start/End: Original strand, 35370208 - 35370379
Alignment:
| Q |
2 |
gtggagaagcagagagtttcattgcagaatgt--aaatctctaggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgat |
99 |
Q |
| |
|
|||||| |||| ||||||||||||| |||| | || || |||||||||||| ||||| ||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
35370208 |
gtggagcagcaaagagtttcattgcggaatatgcaatgctttaggaaagatgaggcaccgtaatcttgtcaaaatcctaacgtgttgctcaagtgttgat |
35370307 |
T |
|
| Q |
100 |
tataaaggtgaaga-tttcaaggctattgtttttgagttcatgcctaatatgagtctagaaaagatgttgca |
170 |
Q |
| |
|
||||| |||||||| || ||||||||||||||||||||||||||| ||| |||| ||||||| |||||||| |
|
|
| T |
35370308 |
tataatggtgaagagttccaaggctattgtttttgagttcatgcccaatgggagtttagaaaacatgttgca |
35370379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 45 - 317
Target Start/End: Original strand, 35437020 - 35437292
Alignment:
| Q |
45 |
aaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgattataaaggtgaagatttcaaggctattgtttttgagttcatgcct |
144 |
Q |
| |
|
||||||||||||| || ||| | ||| ||||||||| ||||||||| |||||||||| ||||||| |||||||||||| |||||||| ||||||||| |
|
|
| T |
35437020 |
aaagatgaaacacaaaaaccttctgaagctcctaactttctgttcaagtattgattataatggtgaagttttcaaggctatagtttttgaattcatgcct |
35437119 |
T |
|
| Q |
145 |
aatatgagtctagaaaagatgttgcacgataatgaaggatctggaagcca-taatctcaacctcacacaaaggatagacattgctcttgatgtagctcat |
243 |
Q |
| |
|
| |||||||||| |||||||| |||||||| |||| || | | ||||| || |||| ||||||| || ||||||| |||||||| ||| |
|
|
| T |
35437120 |
atggggagtctagaaggcttgttgcacaataatgaa-catcttgagtctagaaatctaaatctcagacaaaggttaagtgttgctctcgatgtagcccat |
35437218 |
T |
|
| Q |
244 |
gcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttcttct |
317 |
Q |
| |
|
|||||||||||||||||| || || | |||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
35437219 |
gcattggattatcttcaccataattcccatgaagctgtagttcactgtgatattaagccaagtaatgttcttct |
35437292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 35388480 - 35388544
Alignment:
| Q |
247 |
ttggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgt |
311 |
Q |
| |
|
|||||||||||||||||| || | || |||||||||||||| |||||| ||||||||| |||||| |
|
|
| T |
35388480 |
ttggattatcttcacaataattttgagcaagctgtagttcattgtgatattaagccaaacaatgt |
35388544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 2 - 317
Target Start/End: Complemental strand, 10415913 - 10415598
Alignment:
| Q |
2 |
gtggagaagcagagagtttcattgcagaatgtaaatctctaggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgatta |
101 |
Q |
| |
|
|||||| |||| |||||||||| | ||||| || || ||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10415913 |
gtggagcagcaaagagtttcatggaggaatgcaatgctttaggaaagatgaagcaccgtaatcttgtcaaaatcctaacttgttgttcaagtgttgatta |
10415814 |
T |
|
| Q |
102 |
taaaggtgaagatttcaaggctattgtttttgagttcatgcctaatatgagtctagaaaagatgttgcacgataatgaaggatctggaagccataatctc |
201 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||| ||||| ||||||| ||||||||| |
|
|
| T |
10415813 |
taatggtgaagatttcaaggctattgtttttgagttcatgcctaaggggagtctggaaaagattctgcacgataacgaagggtctggaattcataatctc |
10415714 |
T |
|
| Q |
202 |
aacctcacacaaaggatagacattgctcttgatgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagc |
301 |
Q |
| |
|
| ||| |||||||| ||||||| ||||||||| ||||||||||| | ||||||||||||||||||| ||| ||||| ||||||||||||||||||||| |
|
|
| T |
10415713 |
agcctggcacaaaggttagacatcgctcttgatctagctcatgcacttgattatcttcacaatgatacagagcaagccgtagttcactgtgatgttaagt |
10415614 |
T |
|
| Q |
302 |
caagcaatgttcttct |
317 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
10415613 |
caagcaacgttcttct |
10415598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 2 - 317
Target Start/End: Complemental strand, 10420800 - 10420485
Alignment:
| Q |
2 |
gtggagaagcagagagtttcattgcagaatgtaaatctctaggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgatta |
101 |
Q |
| |
|
|||||| |||| ||||||||| |||||| | || |||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10420800 |
gtggaggagcaaagagtttcaaagcagaacgcgaagctctaggaaagatgaaacaccgaaaccttgtcaagatcctaacttgttgttcaagcgttgatta |
10420701 |
T |
|
| Q |
102 |
taaaggtgaagatttcaaggctattgtttttgagttcatgcctaatatgagtctagaaaagatgttgcacgataatgaaggatctggaagccataatctc |
201 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| ||||| ||||||| ||||||||| |
|
|
| T |
10420700 |
taagggtgaagagttcaaggctattgtttttgagttcatgcctaaggggagtctagaaaagcttctgcacgataaagaagggtctggaattcataatctc |
10420601 |
T |
|
| Q |
202 |
aacctcacacaaaggatagacattgctcttgatgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagc |
301 |
Q |
| |
|
| ||||| ||||||| | ||||||||||||||||||||||||||| | ||||||||||||||| || ||| ||||| |||||||||||||| |||||| |
|
|
| T |
10420600 |
agcctcagacaaagggttgacattgctcttgatgtagctcatgcacttaattatcttcacaatggtacagagcaagccatagttcactgtgatattaagc |
10420501 |
T |
|
| Q |
302 |
caagcaatgttcttct |
317 |
Q |
| |
|
| ||||| |||||||| |
|
|
| T |
10420500 |
cgagcaacgttcttct |
10420485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 28 - 317
Target Start/End: Complemental strand, 10410196 - 10409901
Alignment:
| Q |
28 |
gaatgtaaatctctaggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgattataaaggtgaagatttcaaggctattg |
127 |
Q |
| |
|
||||| ||| |||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10410196 |
gaatgcaaagctctgggaaacatgaagcaccggaatcttgttaagatcctaacttgttgttcaagtgttgattataaaggtgaagatttcaaggctattg |
10410097 |
T |
|
| Q |
128 |
tttttgagttcatgcctaatatgagtctagaaaagatgttgcacgataatgaagga------tctggaagccataatctcaacctcacacaaaggataga |
221 |
Q |
| |
|
|||||||||||||||||||| |||| | ||||| | ||||| | |||| ||| | ||| ||| | |||||||| ||||||||||| |||| |
|
|
| T |
10410096 |
tttttgagttcatgcctaatgggagtttggaaaaccttttgcatggtaataaagaacacgagtctagaaatctgaatctcaatttcacacaaaggttaga |
10409997 |
T |
|
| Q |
222 |
cattgctcttgatgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttcttct |
317 |
Q |
| |
|
||||| ||| | |||||||||||||||||||||||||||| |||| ||| |||| || ||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
10409996 |
cattgttctcaacgtagctcatgcattggattatcttcacattgatgcagagcaagtggtggttcatagtggcgttaaaccaagcaatgttcttct |
10409901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 317
Target Start/End: Original strand, 30662998 - 30663301
Alignment:
| Q |
14 |
agagtttcattgcagaatgtaaatctctaggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgattataaaggtgaaga |
113 |
Q |
| |
|
||||||||| || ||||| ||| || | ||||||||||| ||||| |||||||||||||| || || ||||||||||| || |||||||| ||||| || |
|
|
| T |
30662998 |
agagtttcacagctgaatgcaaagctttgggaaagatgaagcaccgaaatcttgtcaagattcttacatgttgttcaagcgtagattataagggtgacga |
30663097 |
T |
|
| Q |
114 |
tttcaaggctattgtttttgagttcatgcctaatatgagtctagaaaagatgttgcacgataatgaaggatctggaagccataatctcaacctcacacaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| |||| ||||||| |||||||||| |||||||||| |
|
|
| T |
30663098 |
gttcaaggctattgtttttgagttcatgcctaaggggagtctagaaaagcttctgcacgataacgaagagtctggaattcataatctcagcctcacacaa |
30663197 |
T |
|
| Q |
214 |
aggatagacattgctcttgatgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttc |
313 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||||||||||| || || | | |||||||||||||||||| || |||| |||||||| |
|
|
| T |
30663198 |
agggttgacattgctcttgatgtagctcatgcattggattatcttcacaatggtactgagaatgttgtagttcactgtgatgtgaaaccaaacaatgttc |
30663297 |
T |
|
| Q |
314 |
ttct |
317 |
Q |
| |
|
|||| |
|
|
| T |
30663298 |
ttct |
30663301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 317
Target Start/End: Original strand, 30671678 - 30671981
Alignment:
| Q |
14 |
agagtttcattgcagaatgtaaatctctaggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgattataaaggtgaaga |
113 |
Q |
| |
|
||||||||| || ||||| ||| || | ||||||||||| ||||| |||||||||||||| || || ||||||||||| || |||||||| ||||| || |
|
|
| T |
30671678 |
agagtttcacagctgaatgcaaagctttgggaaagatgaagcaccgaaatcttgtcaagattcttacatgttgttcaagcgtagattataagggtgacga |
30671777 |
T |
|
| Q |
114 |
tttcaaggctattgtttttgagttcatgcctaatatgagtctagaaaagatgttgcacgataatgaaggatctggaagccataatctcaacctcacacaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| |||| ||||||| |||||||||| |||||||||| |
|
|
| T |
30671778 |
gttcaaggctattgtttttgagttcatgcctaaggggagtctagaaaagcttctgcacgataacgaagagtctggaattcataatctcagcctcacacaa |
30671877 |
T |
|
| Q |
214 |
aggatagacattgctcttgatgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttc |
313 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||||||||||| || || | | |||||||||||||||||| || |||| |||||||| |
|
|
| T |
30671878 |
agggttgacattgctcttgatgtagctcatgcattggattatcttcacaatggtactgagaatgttgtagttcactgtgatgtgaaaccaaacaatgttc |
30671977 |
T |
|
| Q |
314 |
ttct |
317 |
Q |
| |
|
|||| |
|
|
| T |
30671978 |
ttct |
30671981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 317
Target Start/End: Original strand, 30626047 - 30626350
Alignment:
| Q |
14 |
agagtttcattgcagaatgtaaatctctaggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgattataaaggtgaaga |
113 |
Q |
| |
|
||||||||| || ||||| ||| || | ||||||||||| ||||| |||||||||||||| || || ||||||||||| | |||||||| ||||| || |
|
|
| T |
30626047 |
agagtttcacagctgaatgcaaagctttgggaaagatgaagcaccgaaatcttgtcaagattcttacatgttgttcaagaatagattataagggtgacga |
30626146 |
T |
|
| Q |
114 |
tttcaaggctattgtttttgagttcatgcctaatatgagtctagaaaagatgttgcacgataatgaaggatctggaagccataatctcaacctcacacaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| |||| ||||||| |||||||||| |||||||||| |
|
|
| T |
30626147 |
gttcaaggctattgtttttgagttcatgcctaaggggagtctagaaaagcttctgcacgataacgaagagtctggaattcataatctcagcctcacacaa |
30626246 |
T |
|
| Q |
214 |
aggatagacattgctcttgatgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttc |
313 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||||||||||| || || | | ||||||||| |||||||| || |||| |||||||| |
|
|
| T |
30626247 |
agggttgacattgctcttgatgtagctcatgcattggattatcttcacaatggtactgagaatgttgtagttcaatgtgatgtgaaaccaaacaatgttc |
30626346 |
T |
|
| Q |
314 |
ttct |
317 |
Q |
| |
|
|||| |
|
|
| T |
30626347 |
ttct |
30626350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 79 - 317
Target Start/End: Original strand, 1153787 - 1154025
Alignment:
| Q |
79 |
acttgttgttcaagtgttgattataaaggtgaagatttcaaggctattgtttttgagttcatgcctaatatgagtctagaaaagatgttgcacgataatg |
178 |
Q |
| |
|
|||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| || |
|
|
| T |
1153787 |
acttgttgctcaagtattgattgcaaaggtgaagatttcaaggctattgtttttgagttcatgcctaacgggagtctagaaaagatgttgcatgatattg |
1153886 |
T |
|
| Q |
179 |
aaggatctggaagccataatctcaacctcacacaaaggatagacattgctcttgatgtagctcatgcattggattatcttcacaatgatatagaacaagc |
278 |
Q |
| |
|
|||| |||| || || |||||||| |||||| ||||| |||| ||||||||||| ||||||||||| | |||| |||||||||||||| | | |||| |
|
|
| T |
1153887 |
aagggtctgaaaatcacaatctcaagctcacaaaaagggtagattttgctcttgatatagctcatgcacttgattttcttcacaatgatacaaagcaagt |
1153986 |
T |
|
| Q |
279 |
tgtagttcactgtgatgttaagccaagcaatgttcttct |
317 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1153987 |
tacagttcactgtgatattaagccaagcaatgttcttct |
1154025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 28 - 315
Target Start/End: Original strand, 13564620 - 13564895
Alignment:
| Q |
28 |
gaatgtaaatctctaggaaagatgaaacaccggaatcttgtcaagatcctaacttgttgttcaagtgttgattataaaggtgaagatttcaaggctattg |
127 |
Q |
| |
|
||||| ||| || ||||||||||||| ||||| |||| ||| ||||| || ||| ||||||||| ||||| |||| ||||| |||||||||||||||| |
|
|
| T |
13564620 |
gaatgcaaagctttaggaaagatgaagcaccgaaatcgtgttaagattcttccttaatgttcaagtattgataataagggtgacgatttcaaggctattg |
13564719 |
T |
|
| Q |
128 |
tttttgagttcatgcctaatatgagtctagaaaagatgttgcacgataatgaaggatctggaagccataatctcaacctcacacaaaggatagacattgc |
227 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||| |||| |||||| ||| || ||| |||||| | | | |||||| | |||| |
|
|
| T |
13564720 |
tttttgagttcatgtctaatggtagtctagaaaagatgttgcacaataacgaaggaactgaaaatcattatctcagcttttctcaaagggtggaca---- |
13564815 |
T |
|
| Q |
228 |
tcttgatgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttctt |
315 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||| ||||| ||| ||| |||||||||||||| ||||| |||||| |
|
|
| T |
13564816 |
--------tagcttatgcattggattatcttcacaatgatgtagagcaagccttaggtcattgtgatgttaagccgagcaacgttctt |
13564895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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