View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21469_high_3 (Length: 546)
Name: NF21469_high_3
Description: NF21469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21469_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Complemental strand, 26449794 - 26449252
Alignment:
| Q |
1 |
tgttaatcattatatttcatcttctatttggagtggtgctaaacataaatttaacactcttaaagagaatgtttcttggaagataggcaatggtcagtct |
100 |
Q |
| |
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||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| | ||| ||||||||| ||||||||||||||| ||||| |
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| T |
26449794 |
tgttaatcattatatttcatcttctgttttgagtggtgctaaacacaaatttaacactcttgaggaggatgtttcttcgaagataggcaatggctagtct |
26449695 |
T |
|
| Q |
101 |
attaaattttggactgattcttggtgtggagaccccttaatcactgctctggacatccctcagaatttacatcatcttctgcaatctaatgtggatacct |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26449694 |
attaaattttggactggctcttggtgtggagaccccttaatcactgctctggacatccctcagaatttacatcatcttctgcaatctaatgtggatacct |
26449595 |
T |
|
| Q |
201 |
acatcaaagattcaaattggaatgttcctcaagcttctttgcctgcatatcctgctttgcagcagaaactattgttgactaccatacctattttccctaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||| |||| ||||||||| ||||||| ||||||||| ||||||| |
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| T |
26449594 |
acatcaaagattcaaattggaatgttcctcaagcttttttggttgcatattctgctttggagcaaaaactattgatgactactatacctattgtccctaa |
26449495 |
T |
|
| Q |
301 |
agaagataaactaatatagaaagcctctcatgatggaaatctagcttttaaagacgcatatctcttcctgacttccaatcagcctcagaacatcagttgg |
400 |
Q |
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||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26449494 |
agaagataaactaatatggaaagcctctcatgatggaaatttagcttttaaagacgcatatctcttcctgacttccaatcagcctcagaacatcagttgg |
26449395 |
T |
|
| Q |
401 |
gccaaagtcatttggcacattgctatccctccttctaagtccgtgcttgtttggagactgttgcataacaagcttcctacagatgataacctctctctta |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26449394 |
gccaaagtcatttggcacattgctatccctccttctaagtccttgcttgtttggagactgttgcataacaagcttcctacagatgataacctctctctta |
26449295 |
T |
|
| Q |
501 |
gaggctttcatactacatccatttgcaatctctgtggtgctgc |
543 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| ||||||| |
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|
| T |
26449294 |
gaggctgtcatactacatccatttgcaatctctgtagtgctgc |
26449252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 19573379 - 19573514
Alignment:
| Q |
5 |
aatcattatatttcatcttctatttggagtggtgctaaacataaatttaacactcttaaagagaatgtttcttggaagataggcaatggtcagtctatta |
104 |
Q |
| |
|
|||||| | |||||||| || ||||||||| |||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| |||| | |
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| T |
19573379 |
aatcatcacatttcatcatcaatttggagtagtgcaaaacataaattcaacacgcttaaggagaatgtttcttggaagataggcaatggtcagcctatca |
19573478 |
T |
|
| Q |
105 |
aattttggactgattcttggtgtggagaccccttaa |
140 |
Q |
| |
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||||| ||||||||||||||||||||||||| |||| |
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| T |
19573479 |
aatttaggactgattcttggtgtggagaccctttaa |
19573514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 19593783 - 19593907
Alignment:
| Q |
5 |
aatcattatatttcatcttctatttggagtggtgctaaacataaatttaacactcttaaagagaatgtttcttggaagataggcaatggtcagtctatta |
104 |
Q |
| |
|
|||||| ||||||||| || |||| |||| |||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||| | |
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| T |
19593783 |
aatcatcatatttcattatcaatttagagtagtgcaaaacataaattcaacactcttaaggagaatgtttcttggaagataggcaatggtcagcctatca |
19593882 |
T |
|
| Q |
105 |
aattttggactgattcttggtgtgg |
129 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
19593883 |
aattttggactgattcttggtgtgg |
19593907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 162
Target Start/End: Complemental strand, 5151375 - 5151225
Alignment:
| Q |
12 |
atatttcatcttctatttggagtggtgctaaacataaatttaacactcttaaagagaatgtttcttggaagataggcaatggtcagtctattaaattttg |
111 |
Q |
| |
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|||| |||||||| |||||||||||||| || || |||||||||||||||| || ||||||| ||||| ||||| |||||||| |||| || ||||| |
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| T |
5151375 |
atatctcatcttcaatttggagtggtgccaagcacaaatttaacactcttatggacaatgttttgtggaaaataggtaatggtcaaactatcaagttttg |
5151276 |
T |
|
| Q |
112 |
gactgattcttggtgtggagaccccttaatcactgctctggacatccctca |
162 |
Q |
| |
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||| || ||||||||||||| || ||||||||||| || |||||||||| |
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| T |
5151275 |
gacggacccttggtgtggagatcctttaatcactgcccttaacatccctca |
5151225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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