View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21469_high_32 (Length: 304)
Name: NF21469_high_32
Description: NF21469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21469_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 2 - 293
Target Start/End: Complemental strand, 45103829 - 45103536
Alignment:
| Q |
2 |
tcttcttcatcatcagtacttgtttgatgacaatattgcccttgcatattctctacatcaaccattttctattgtaataatgacagttagttaaaaagtt |
101 |
Q |
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| T |
45103829 |
tcttcttcatcatcagtacttgtttgatgacaatattgcccttgcatattctctacatcaaccatttcctattgtaataatgacagttagttaaaaagtt |
45103730 |
T |
|
| Q |
102 |
aaaacaaggtttatgagaaaatataaatgatacataaca--nnnnnnnngttgatcataatgatttacgatttatnnnnnnncataaagtataacttatg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
45103729 |
aaaacaaggtttatgagaaaatataaatgatacataacattttttttttgttgatcataatgatttaggatttataaaaaaacataaagtataacttatg |
45103630 |
T |
|
| Q |
200 |
agaaataattatatgtgtagctagtgttattaccgaatgaagaggccaattttcccatgtttgctccatcagaagaaaatgtgttctgttctgt |
293 |
Q |
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| T |
45103629 |
agaaataattatatgtgtagctagtgttattaccgaatgaagaggccaattttcccatgtttgctccatcagaagaaaatgtgttctgttctgt |
45103536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 45130458 - 45130384
Alignment:
| Q |
2 |
tcttcttcatcatcagtacttgtttgatgacaatattgcccttgcatattctctacatcaaccattttctattgt |
76 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||| ||| | |||||||||| ||| || ||||||| |
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| T |
45130458 |
tcttcttcatcatcagcactagtttgatgacaatattgccctagcaaaacctctacatcacccaattcctattgt |
45130384 |
T |
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