View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21469_high_34 (Length: 303)
Name: NF21469_high_34
Description: NF21469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21469_high_34 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 8 - 303
Target Start/End: Complemental strand, 11534033 - 11533738
Alignment:
| Q |
8 |
caccagagacaacccagtaaaagcccaccatccaccaaaggaacgaaaccccagtatttattgattcacatcgcttggtgaatctgttttagagaaacca |
107 |
Q |
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| T |
11534033 |
caccagagacaacccagtaaaagcccaccatccaccaaaggaacgaaaccccggtatttattgattcacatcgcttggtgaatctgttttagagaaacca |
11533934 |
T |
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| Q |
108 |
gaataagtgtctacaaatctaaattacttgatatagtgcaaggaagtagatgatagtaagccaaaccacatgtctatacacatagccaaagtagattaac |
207 |
Q |
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| T |
11533933 |
gaataagtgtctacaaatctaaattacttgatacagtacaaggaagtagatgatagtaagccaaaccacatgtctatacacatagccaaagtagattaac |
11533834 |
T |
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| Q |
208 |
atgcattagcagcaaagtcatttaaaagaggaaatgacattctatttccttttcccaaaatatgccatagtcctgttcggctgacatttgataatg |
303 |
Q |
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| T |
11533833 |
atgcattagcagcaaagtcatttaagagaggaaatgacattctatttccttttcctaaaatatgccatagtcctgttcggctgacatttgataatg |
11533738 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 44440325 - 44440293
Alignment:
| Q |
15 |
gacaacccagtaaaagcccaccatccaccaaag |
47 |
Q |
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| T |
44440325 |
gacaacccagtaaaatcccaccatccaccaaag |
44440293 |
T |
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