View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21469_high_8 (Length: 397)
Name: NF21469_high_8
Description: NF21469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21469_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 4 - 385
Target Start/End: Complemental strand, 34820052 - 34819671
Alignment:
| Q |
4 |
gagaataaatgtgtttagtgcaaaagcaataagaagatctaagtctgaatcagaaatctttgctggaagttttattgacgagagtatcaccaaaaatgat |
103 |
Q |
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|||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||| |
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| T |
34820052 |
gagactaaatgtgtttagtgcaaaagcaattagaagatccaagtctgaatcagaaatcttggctgggagttttgttgacgagagtatcaccaaaaatgat |
34819953 |
T |
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| Q |
104 |
gttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgctgaggcatgtcctttaaagaagaaagggaagagttatgaaggcgaggcca |
203 |
Q |
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| T |
34819952 |
gatggtacgtatgcggtggttttgcaagctaagattgaccatcaactcgttgaggcatgtcctttaaagaagaaagggaagagtgataaaggcgaggcca |
34819853 |
T |
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| Q |
204 |
acaagaagaaggtcgagtgcgttcttgaggttgagatcggcggctccttgtggaacaggaacttcgatcgtgctggcttcgtgaaggatcatttcaacct |
303 |
Q |
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| T |
34819852 |
acaagaagaatgtcgagtgcgttcttgaggttgagatcggcggctccttgtggaacaggaacttcgatcgtgctggcttcgtgaaggatcatttcaacct |
34819753 |
T |
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| Q |
304 |
ttatgaagattttgacgtaacaaggaagtctaatcactccaatatgtttcatgatgctagtgtttcttgtttgcgctctgtg |
385 |
Q |
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| T |
34819752 |
ttatgaagattttgaggcaacaaggaagtctaatcactccaatatgtttcatgatgctagtgtttcttgtttgcgctctgtg |
34819671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 71 - 213
Target Start/End: Complemental strand, 34820261 - 34820119
Alignment:
| Q |
71 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgctgaggcatgtcctttaa |
170 |
Q |
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|||||| |||||||||| ||||| |||||| ||||||||| || ||||| |||| ||||| || |||||||||||||||||||||| | |||||||| |
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| T |
34820261 |
agttttgttgacgagagcatcacaaaaaataatgttggtacgtcataggtgactttggaagctgaggttgaccatcaactcgctgaggcgtctcctttaa |
34820162 |
T |
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| Q |
171 |
agaagaaagggaagagttatgaaggcgaggccaacaagaagaa |
213 |
Q |
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| T |
34820161 |
agaagaaagggaagagtgataaaggcgagacaaccaagaagaa |
34820119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 34820612 - 34820530
Alignment:
| Q |
71 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgc |
153 |
Q |
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|||||| ||||||| |||||||| |||| |||||| ||||||| |||||||||||| ||| | || |||||||||| ||||| |
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| T |
34820612 |
agttttgttgacgaaagtatcactaaaattgatgtcggtatgtcggaggtggttttggaagttgagcttgaccatcagctcgc |
34820530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 153
Target Start/End: Complemental strand, 34820377 - 34820296
Alignment:
| Q |
72 |
gttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgc |
153 |
Q |
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||||| |||||||||||||||| ||||||||| |||||| || ||||||| |||| ||| | | |||||||||||||||| |
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| T |
34820377 |
gttttgttgacgagagtatcacaaaaaatgattttggtacgtcagaggtggctttggaagttgtggttgaccatcaactcgc |
34820296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 34820729 - 34820653
Alignment:
| Q |
71 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatca |
147 |
Q |
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|||||| |||||||||||||||| ||||||||| |||||| || ||||||| |||| ||||| || || ||||||| |
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| T |
34820729 |
agttttgttgacgagagtatcacaaaaaatgatattggtacgtcagaggtggctttggaagctgaggttaaccatca |
34820653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 110
Target Start/End: Complemental strand, 34820846 - 34820807
Alignment:
| Q |
71 |
agttttattgacgagagtatcaccaaaaatgatgttggta |
110 |
Q |
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|||||| |||||||||||||||| |||||||||||||||| |
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| T |
34820846 |
agttttgttgacgagagtatcacaaaaaatgatgttggta |
34820807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 34820495 - 34820413
Alignment:
| Q |
71 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgc |
153 |
Q |
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|||||| ||||||||||| ||| |||||||||||||||| | |||||||||||| ||| | || |||||||||| ||||| |
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| T |
34820495 |
agttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaagttgaggttgaccatcagctcgc |
34820413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 339
Target Start/End: Complemental strand, 22080743 - 22080680
Alignment:
| Q |
276 |
ctggcttcgtgaaggatcatttcaacctttatgaagattttgacgtaacaaggaagtctaatca |
339 |
Q |
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||||||||||||| ||||||||||||||| ||| |||||||| | | | |||||||||||||| |
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| T |
22080743 |
ctggcttcgtgaaagatcatttcaaccttcctgaggattttgaggcagcgaggaagtctaatca |
22080680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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