View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2146_high_15 (Length: 238)
Name: NF2146_high_15
Description: NF2146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2146_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 1236476 - 1236370
Alignment:
| Q |
44 |
aaattggcaaagactttggagggaaatattttagggttaacaattttggtaattaatgcattacaattagagggaaatttttaggtttagatgttgcttg |
143 |
Q |
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| T |
1236476 |
aaattgccaaagactttggagggaaatgttttagggttaacaatttag-taatttatgcagtacagttagagggaaatttttaggtttagatgttgcttt |
1236378 |
T |
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| Q |
144 |
acctaata |
151 |
Q |
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|||||||| |
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| T |
1236377 |
acctaata |
1236370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 2643822 - 2643777
Alignment:
| Q |
175 |
ggagatgttcaacagtcacaaacacatttctgatttttgcaagaac |
220 |
Q |
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| T |
2643822 |
ggagatgttcaacaagcacaaacacatttcagatttttgcaagaac |
2643777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 4098934 - 4098873
Alignment:
| Q |
96 |
ttaatgcattacaattagagggaaatttttaggtttagatgttgcttgacctaataagcttt |
157 |
Q |
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| T |
4098934 |
ttaatgcagcacaattagagggaaaaatctaggtttaggtgttgtatgacctaataagcttt |
4098873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 7886686 - 7886636
Alignment:
| Q |
170 |
atgtaggagatgttcaacagtcacaaacacatttctgatttttgcaagaac |
220 |
Q |
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| T |
7886686 |
atgtaggagatgttcaacagtcacaaacacatttctgatttttgcaagaac |
7886636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 167
Target Start/End: Original strand, 38088898 - 38089025
Alignment:
| Q |
39 |
aattcaaattggcaaagactttggagggaaatattttagggttaacaattttggtaattaatgcattacaattagagggaaatttttaggtttagatgtt |
138 |
Q |
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||||||||||||||| | || ||||||||| || |||||||||||| || | | |||||||| ||||||||||| ||||| |||||||||| |||| |
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| T |
38088898 |
aattcaaattggcaagaatttgggagggaaacatattagggttaacatgcttaggagttaatgcaacacaattagaggaaaattattaggtttaggtgtt |
38088997 |
T |
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| Q |
139 |
gcttgacctaataagcttttaaggataag |
167 |
Q |
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| T |
38088998 |
gcttaacctaataa-cttttaagaataag |
38089025 |
T |
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