View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2146_high_3 (Length: 390)
Name: NF2146_high_3
Description: NF2146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2146_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 110 - 371
Target Start/End: Complemental strand, 29973006 - 29972742
Alignment:
| Q |
110 |
atgaataataatactaagtgttattagcttttcttatnnnnnnn-gaagaaggtgtaattagctgttaaatt-gttgataaggagttgatccaatgatct |
207 |
Q |
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| T |
29973006 |
atgaataataatactaagtgttattagcttttcttataaaaaaaagaagaaggtgtaattagctgttaaatttgttgataaggagttgatccaatgatct |
29972907 |
T |
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| Q |
208 |
cattatcctccaagctctatgtttctcccctcaaaccaccaaatcaacaatatcatcactcgttttcaa-taagtatattttactaataccaatgataat |
306 |
Q |
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| T |
29972906 |
cattatcctccaagctctatgtttctcccttcaaaccaccaaatcaacaatatcatcactcgttttcaattaagtatattttactaataccaatgataat |
29972807 |
T |
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| Q |
307 |
attgttgagcataataaaaccttaatttagagtcatgtgatcatgttaacgtcacaaagatctag |
371 |
Q |
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| T |
29972806 |
attgttgagcataataaaaccttaatttagagtcatgtgatcatgttaacgtcacaaacatctag |
29972742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 29973100 - 29973037
Alignment:
| Q |
16 |
atatgaaaacaaatattccagcatatacatatcgtatgtatgtcaaaattaagtacaatattca |
79 |
Q |
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| T |
29973100 |
atatgaaaacaaatattccagcatatacatatcgtatgtatgtcaaaattaagtacaatattca |
29973037 |
T |
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