View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2146_high_5 (Length: 376)
Name: NF2146_high_5
Description: NF2146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2146_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 7 - 365
Target Start/End: Complemental strand, 42594290 - 42593932
Alignment:
| Q |
7 |
aaaatcactaggaaccttggagtaagcttctttggcattctatggaatagctgcaagcacaatctttacacaatttcaatgctgctgatttcagcctttt |
106 |
Q |
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| T |
42594290 |
aaaatcactaggaaccttggagtaagcttctctggcattctatggaatagctgcaagcacaatctttacacaatttcaatgctgctgatttcagcctttt |
42594191 |
T |
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| Q |
107 |
tgtcctttgccacagagttcaagcaggagggacccaaatatggttggcatgatggtgttgccatggtgttcgctcttctacttctgattgcattctcttc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42594190 |
tgtcctttgccacagagttcaagcaggagggacccaaatatggttggcatgatggtgttgccatggtgttcgctcttctacttctgattgcattctcttc |
42594091 |
T |
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| Q |
207 |
aataactaacttttgccgtgagcggaaaatgatgaagctggcaaagaaaaaaggtcagtggaaattcaatgttaaaagacgtgaagcgtccaaagctgtg |
306 |
Q |
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| T |
42594090 |
aataactaacttttgccgtgagcggaaaatgatgaagcttgcaaagaaaaaaggtcagtggaaattcaatgttaaaagacgtgaagcgtccaaacctgtg |
42593991 |
T |
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| Q |
307 |
cgtctcaccgtatctgatattgtggtgggtgacatggtctatttgagtccccatgatga |
365 |
Q |
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| T |
42593990 |
cctctcaccgtatctgatattgtggtgggtgacatggtctatttgagtccccatgatga |
42593932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 4090500 - 4090732
Alignment:
| Q |
10 |
atcactaggaaccttggagtaagcttctttggcattctatggaatagctgcaagcacaatctttacacaatttcaatgctgctgatttcagcctttttgt |
109 |
Q |
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| T |
4090500 |
atcactaggaaccttggatcaagcttctttgactttttatggtataccatcaaggacaatcgttgcacagtttcattgcttctgatttcagctttattct |
4090599 |
T |
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| Q |
110 |
cctttgccacagagttcaagcaggagggacccaaatatggttggcatgatggtgttgccatggtgttcgctcttctacttctgattgcattctcttcaat |
209 |
Q |
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|||| |||| || | || | |||| |||| ||| |||||||||||||||||||||||||| | || || ||||||| || |||||||||||||||| |
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| T |
4090600 |
ccttagccataggatacatggaggaaggactcaagtatggttggcatgatggtgttgccatagctttttctgttctactaatgcttgcattctcttcaat |
4090699 |
T |
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| Q |
210 |
aactaacttttgccgtgagcggaaaatgatgaa |
242 |
Q |
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| T |
4090700 |
aacaagcttttggcgtcataggaaaatgatgaa |
4090732 |
T |
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