View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2146_low_1 (Length: 616)
Name: NF2146_low_1
Description: NF2146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2146_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 17 - 402
Target Start/End: Original strand, 24160220 - 24160605
Alignment:
| Q |
17 |
gatgaagttaggatacccgaattcatcgggtacaaggataaaattcaaattctcatttcagttggatatgagtagatgatggagacgaggaaggtaaaat |
116 |
Q |
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| T |
24160220 |
gatgaagttaggatacccgaatccatcgggtacaaggataaaattcaaattctcatttcagttggatatgagtagatgatggagatgaggaaggtaaaat |
24160319 |
T |
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| Q |
117 |
ttatccctatctcacctattgtcatgtcttgtattagaagggaatagatacataacacttgatatttaagcgcaaaaattaagcatcacacctatgcacc |
216 |
Q |
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| T |
24160320 |
ttgtccctatctcacccattgtcatgtcttgtattagaagggaatagatacataacacttgatatttaagcgcaaaaattaagcatcacacctatgcacc |
24160419 |
T |
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| Q |
217 |
ttataaaatgagtttaaatttgctcaatttatctacaccaatttattatccgtttcatcaaatatatgtcaactcatagcctttttaaacgttgatttga |
316 |
Q |
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| T |
24160420 |
ttataaaatgagtttaaatttgctcaatttatctacaccaatttattatccgtttcatcaaatatatgtcaactcatagcctttttaaacgttgatttga |
24160519 |
T |
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| Q |
317 |
ttagaactgataccttttagtgtttgtgctaacataataaaaatacgagttgggctatgctatgttaaactaaaaatggtgatttt |
402 |
Q |
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| T |
24160520 |
ttagaactgataccttttagtgtttgtgctaacataataaaaatacgagttgggtaatactatgttaaactaaaaatggtgatttt |
24160605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 538 - 598
Target Start/End: Original strand, 24160664 - 24160724
Alignment:
| Q |
538 |
agttttatgataaatttataacttttgaatcagggataaaattaagtacttagtataaaat |
598 |
Q |
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| T |
24160664 |
agttttatgataaatttataacttttgaatcagggataaaattaagtacttagtataaaat |
24160724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 451 - 514
Target Start/End: Original strand, 24160610 - 24160676
Alignment:
| Q |
451 |
attaaaatcaagaattatata---cagaattatgtattcaatataaagtgcataagttttatgataa |
514 |
Q |
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| T |
24160610 |
attaaaatcaagaattatttattacaaaattatgtattcaatataaagtgcataagttttatgataa |
24160676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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