View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2146_low_13 (Length: 325)

Name: NF2146_low_13
Description: NF2146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2146_low_13
NF2146_low_13
[»] chr7 (9 HSPs)
chr7 (1-303)||(1442593-1442886)
chr7 (171-297)||(40491604-40491732)
chr7 (185-297)||(45557391-45557505)
chr7 (185-254)||(12306794-12306863)
chr7 (185-245)||(33853429-33853489)
chr7 (185-252)||(17111918-17111985)
chr7 (187-254)||(25156271-25156338)
chr7 (185-239)||(29829314-29829368)
chr7 (212-254)||(40561730-40561772)
[»] chr3 (13 HSPs)
chr3 (171-311)||(31708170-31708312)
chr3 (179-307)||(31013034-31013164)
chr3 (171-254)||(37334965-37335048)
chr3 (171-296)||(35264342-35264469)
chr3 (194-245)||(14022053-14022104)
chr3 (171-242)||(32523265-32523336)
chr3 (177-245)||(1441344-1441412)
chr3 (185-233)||(35058446-35058494)
chr3 (255-299)||(52364075-52364119)
chr3 (194-245)||(41591307-41591358)
chr3 (185-296)||(46853479-46853592)
chr3 (185-245)||(3776602-3776662)
chr3 (195-235)||(31766202-31766242)
[»] chr8 (11 HSPs)
chr8 (171-297)||(32927918-32928046)
chr8 (171-297)||(26100077-26100205)
chr8 (171-297)||(35495016-35495144)
chr8 (177-250)||(10368040-10368113)
chr8 (171-254)||(9461470-9461552)
chr8 (182-254)||(2778584-2778656)
chr8 (185-245)||(16972009-16972069)
chr8 (171-297)||(32994171-32994301)
chr8 (171-245)||(5219199-5219273)
chr8 (185-254)||(27218790-27218859)
chr8 (171-235)||(1373081-1373145)
[»] chr1 (11 HSPs)
chr1 (191-297)||(34915092-34915200)
chr1 (182-245)||(18325050-18325113)
chr1 (179-297)||(7524139-7524259)
chr1 (177-254)||(5268290-5268367)
chr1 (258-310)||(36660503-36660555)
chr1 (171-215)||(47899363-47899407)
chr1 (171-245)||(45660537-45660610)
chr1 (219-297)||(1514369-1514449)
chr1 (185-297)||(3016188-3016300)
chr1 (194-254)||(35961439-35961499)
chr1 (213-245)||(48635165-48635197)
[»] chr4 (12 HSPs)
chr4 (171-243)||(36639877-36639948)
chr4 (185-244)||(33843792-33843851)
chr4 (258-311)||(52965874-52965927)
chr4 (171-245)||(22250306-22250380)
chr4 (195-245)||(41751227-41751277)
chr4 (195-245)||(55927725-55927775)
chr4 (212-310)||(1616403-1616503)
chr4 (212-245)||(8604594-8604627)
chr4 (228-294)||(45694643-45694711)
chr4 (185-226)||(48045697-48045738)
chr4 (170-242)||(1023848-1023920)
chr4 (171-235)||(38740305-38740369)
[»] chr6 (14 HSPs)
chr6 (173-222)||(29937601-29937650)
chr6 (171-310)||(46219-46362)
chr6 (185-251)||(3798974-3799040)
chr6 (177-254)||(3289816-3289892)
chr6 (209-253)||(957592-957636)
chr6 (189-245)||(25195126-25195181)
chr6 (186-254)||(34620957-34621025)
chr6 (186-254)||(34748394-34748462)
chr6 (194-298)||(434191-434297)
chr6 (229-296)||(947594-947661)
chr6 (213-297)||(4910934-4911020)
chr6 (213-293)||(25195339-25195421)
chr6 (171-241)||(7952646-7952716)
chr6 (180-236)||(35098398-35098454)
[»] scaffold0361 (1 HSPs)
scaffold0361 (171-242)||(14045-14116)
[»] chr2 (8 HSPs)
chr2 (171-242)||(15220792-15220863)
chr2 (189-242)||(4908873-4908926)
chr2 (185-245)||(3853933-3853993)
chr2 (171-311)||(5532963-5533104)
chr2 (185-245)||(1976809-1976869)
chr2 (194-254)||(16518849-16518909)
chr2 (213-297)||(43501151-43501235)
chr2 (171-238)||(45000439-45000507)
[»] chr5 (4 HSPs)
chr5 (171-245)||(117427-117501)
chr5 (171-240)||(29922985-29923054)
chr5 (171-240)||(35138954-35139023)
chr5 (258-310)||(2937602-2937654)


Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 1442886 - 1442593
Alignment:
Q  1 ttaacaaaactattgaatgcattaacttgatagaaagagaaatgaggcattttgcatcaaccaaaaccattgttgtttgaacacttagacattgaaacat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1442886 ttaacaaaactattgaatgcattatcttgatagaaagagaaatgaggcattttgcatcaaccaaaaccattgttgtttgaacacttagacattgaaacat 1442787  T
Q  101 atgaaacgcaactatgttgctgaaatgaatattctgattgcattattacttgtctcaatttatgtatggatgattatgtaaaactgattctgactaaaag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||| ||||||||||||||||    
T  1442786 atgaaacgcaactatgttgctgaaatgaatattctgattgcattattacttgtctcaatttat---------attatgtaaaattgattctgactaaaag 1442696  T
Q  201 tgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagttgctgtaaatttgtgttttagaatcaattatagaatcaaaagctatac 300  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1442695 tgagttgcaggtaaagtggtttatgtatggatacattcatgtaaacatgatttgctgtaaatttgtgttttagaatcaattatagaatcaaaagctatac 1442596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 171 - 297
Target Start/End: Complemental strand, 40491732 - 40491604
Alignment:
Q  171 tgattatgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagtt--gctgtaaatttgtgt 268  Q
    ||||| ||||||| ||||| ||||||||||||||||| || ||||||||||||| | ||||||||||||||||||  ||||||   || |||||||||||    
T  40491732 tgattctgtaaaattgattttgactaaaagtgagttgaaggtaaagtgatttatttttggatacattcatgtaaaagtgagttaaactttaaatttgtgt 40491633  T
Q  269 tttagaatcaattatagaatcaaaagcta 297  Q
     | | | |||||| |||||||||||||||    
T  40491632 gtaaaagtcaattctagaatcaaaagcta 40491604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 45557505 - 45557391
Alignment:
Q  185 tgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagtt--gctgtaaatttgtgttttagaatcaatta 282  Q
    ||||||||||||||||||||||| || ||||||||||| ||| ||||||||||||||||||  ||||||  |||  |||||||||| | | |||||||      
T  45557505 tgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtgagttgagctacaaatttgtgtgtaaaaatcaatcc 45557406  T
Q  283 tagaatcaaaagcta 297  Q
    |||||| ||||||||    
T  45557405 tagaattaaaagcta 45557391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 12306863 - 12306794
Alignment:
Q  185 tgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagttg 254  Q
    |||||||| |||||||||||||| |||||||||||||||||| ||| || |||||||||||  |||||||    
T  12306863 tgattctggctaaaagtgagttgaagataaagtgatttatgtttggctagattcatgtaaaagtgagttg 12306794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 33853429 - 33853489
Alignment:
Q  185 tgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaa 245  Q
    |||||||| |||| ||||||||| || ||||||||||||||| ||||||||||||||||||    
T  33853429 tgattctggctaagagtgagttgaagctaaagtgatttatgtttggatacattcatgtaaa 33853489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 17111985 - 17111918
Alignment:
Q  185 tgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagt 252  Q
    ||||| ||||||||| ||| ||| || ||||||||||| ||| ||||| |||||||||||| ||||||    
T  17111985 tgattttgactaaaattgaattgtaggtaaagtgatttgtgtttggatgcattcatgtaaaaatgagt 17111918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 25156338 - 25156271
Alignment:
Q  187 attctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagttg 254  Q
    ||||||||||||| ||||||| ||||||| |||||| ||| || |||||||||| ||||  |||||||    
T  25156338 attctgactaaaaatgagttgaagataaaatgatttgtgtttgaatacattcatataaaagtgagttg 25156271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 29829314 - 29829368
Alignment:
Q  185 tgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattca 239  Q
    |||||||| |||||| ||||||| |  ||||||||||||||| ||||||||||||    
T  29829314 tgattctggctaaaaatgagttgaatgtaaagtgatttatgtttggatacattca 29829368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 40561730 - 40561772
Alignment:
Q  212 taaagtgatttatgtatggatacattcatgtaaacatgagttg 254  Q
    ||||||||||||||| ||||||||||||||||||  |||||||    
T  40561730 taaagtgatttatgtttggatacattcatgtaaaagtgagttg 40561772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 171 - 311
Target Start/End: Original strand, 31708170 - 31708312
Alignment:
Q  171 tgattatgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagttg--ctgtaaatttgtgt 268  Q
    ||||| ||||||| |||||  ||||||||||||||||| ||||||||| ||| ||| ||||||||||||||||||  |||||||   | |||||||||||    
T  31708170 tgattttgtaaaattgattaggactaaaagtgagttgctgataaagtggtttgtgtttggatacattcatgtaaaagtgagttgaattataaatttgtgt 31708269  T
Q  269 tttagaatcaattatagaatcaaaagctatacatagtagcttc 311  Q
     |||||||||||| ||||||||||||||| | |||||||||||    
T  31708270 gttagaatcaattctagaatcaaaagctacaaatagtagcttc 31708312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 179 - 307
Target Start/End: Complemental strand, 31013164 - 31013034
Alignment:
Q  179 taaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagttg--ctgtaaatttgtgttttagaat 276  Q
    ||||| |||||| |||||||||||||||| |||||||||||||| ||| ||||| |||||||||| |  |||||||   | ||||||||||| |||||||    
T  31013164 taaaattgattccgactaaaagtgagttgtagataaagtgatttgtgtttggatgcattcatgtacaagtgagttgaattctaaatttgtgtgttagaat 31013065  T
Q  277 caattatagaatcaaaagctatacatagtag 307  Q
    ||||| |||| ||||| |||| | |||||||    
T  31013064 caattctagattcaaaggctacaaatagtag 31013034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 37334965 - 37335048
Alignment:
Q  171 tgattatgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagttg 254  Q
    ||||||| ||||| |||||| |||||||| ||||||| || ||||||||||||||| || |||||||||| |||| ||||||||    
T  37334965 tgattatataaaattgattccgactaaaattgagttgaaggtaaagtgatttatgtctgaatacattcatataaaaatgagttg 37335048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 296
Target Start/End: Original strand, 35264342 - 35264469
Alignment:
Q  171 tgattatgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagttg--ctgtaaatttgtgt 268  Q
    ||||| ||||||| ||||| | || |||||||||||| |  |||||||| |||||| ||| |||||||||||||| |||| |||  |  |||||||  ||    
T  35264342 tgattctgtaaaattgattgtaaccaaaagtgagttgaaagtaaagtgagttatgtttgggtacattcatgtaaaaatgacttgaacaataaatttaagt 35264441  T
Q  269 tttagaatcaattatagaatcaaaagct 296  Q
     ||| |||||||| ||||||||||||||    
T  35264442 gttaaaatcaattctagaatcaaaagct 35264469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 245
Target Start/End: Complemental strand, 14022104 - 14022053
Alignment:
Q  194 ctaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaa 245  Q
    |||||||||||||||||||||||| |||| ||| ||||||||||||| ||||    
T  14022104 ctaaaagtgagttgcagataaagtaatttgtgtttggatacattcatttaaa 14022053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 32523265 - 32523336
Alignment:
Q  171 tgattatgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgt 242  Q
    |||||| |||||| ||||| ||| ||||||| ||||| |||||||||||||| ||| ||||| |||||||||    
T  32523265 tgattaggtaaaattgattttgattaaaagttagttgaagataaagtgatttgtgtttggatgcattcatgt 32523336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 1441344 - 1441412
Alignment:
Q  177 tgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaa 245  Q
    ||||||| |||||||| |||||||||||||| |  ||||||||||| ||| | |||||||||| |||||    
T  1441344 tgtaaaattgattctgtctaaaagtgagttgaacgtaaagtgatttgtgtttagatacattcacgtaaa 1441412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 35058494 - 35058446
Alignment:
Q  185 tgattctgactaaaagtgagttgcagataaagtgatttatgtatggata 233  Q
    ||||||| ||||||||||||||| |||||||||| ||||||| ||||||    
T  35058494 tgattctaactaaaagtgagttgaagataaagtgctttatgtttggata 35058446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 52364119 - 52364075
Alignment:
Q  255 ctgtaaatttgtgttttagaatcaattatagaatcaaaagctata 299  Q
    |||||||||| ||||| | ||||||||||||||||||||||||||    
T  52364119 ctgtaaatttatgtttgaaaatcaattatagaatcaaaagctata 52364075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 41591307 - 41591358
Alignment:
Q  194 ctaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaa 245  Q
    |||||| ||||||| |  ||||||||||||||| ||||||||||||||||||    
T  41591307 ctaaaaatgagttgaatttaaagtgatttatgtttggatacattcatgtaaa 41591358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 296
Target Start/End: Original strand, 46853479 - 46853592
Alignment:
Q  185 tgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagttg--ctgtaaatttgtgttttagaatcaatta 282  Q
    ||||| || ||| |||| ||||| || |||||||||||||||  ||||| ||| |||||||  |||||||  |  |||||||| || ||| ||||||||     
T  46853479 tgattttggctacaagtaagttgaaggtaaagtgatttatgtcaggatatatttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattc 46853578  T
Q  283 tagaatcaaaagct 296  Q
    ||||||||||||||    
T  46853579 tagaatcaaaagct 46853592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 3776662 - 3776602
Alignment:
Q  185 tgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaa 245  Q
    |||||||| |||||| ||||||| |  ||||||||||||||  |||||||||| |||||||    
T  3776662 tgattctggctaaaattgagttgaatgtaaagtgatttatgcttggatacattgatgtaaa 3776602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 31766202 - 31766242
Alignment:
Q  195 taaaagtgagttgcagataaagtgatttatgtatggataca 235  Q
    ||||||||||||| || ||||||||||||||| ||||||||    
T  31766202 taaaagtgagttgaagttaaagtgatttatgtttggataca 31766242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 297
Target Start/End: Complemental strand, 32928046 - 32927918
Alignment:
Q  171 tgattatgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagttg--ctgtaaatttgtgt 268  Q
    ||||||||||||| ||||||| ||||||| ||||||| ||  |||||||||| ||| ||||||||||||||||||  |||||||  || |||||||||||    
T  32928046 tgattatgtaaaattgattcttactaaaattgagttgaaggcaaagtgatttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgt 32927947  T
Q  269 tttagaatcaattatagaatcaaaagcta 297  Q
     | | ||| |||| || ||||||||||||    
T  32927946 gtaaaaatgaattctataatcaaaagcta 32927918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 297
Target Start/End: Original strand, 26100077 - 26100205
Alignment:
Q  171 tgattatgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagttg--ctgtaaatttgtgt 268  Q
    ||||||||||||| |||||||||||||||  |||||| || |||||  |||| ||| ||||| |||| |||||||  |||||||  |  |||||||||||    
T  26100077 tgattatgtaaaattgattctgactaaaaacgagttgaaggtaaagctatttgtgtttggatgcatttatgtaaaagtgagttgaaccataaatttgtgt 26100176  T
Q  269 tttagaatcaattatagaatcaaaagcta 297  Q
     | | ||||||||||||||||||||||||    
T  26100177 gtaaaaatcaattatagaatcaaaagcta 26100205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 171 - 297
Target Start/End: Complemental strand, 35495144 - 35495016
Alignment:
Q  171 tgattatgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagttg--ctgtaaatttgtgt 268  Q
    ||||||||||||| || |||||| |||||||| |||| | |||||||||||| ||| |||||| |||||||||||  | |||||  || || ||||||||    
T  35495144 tgattatgtaaaattgcttctgattaaaagtgggttgaatataaagtgatttgtgtttggatatattcatgtaaaagtaagttgaactatagatttgtgt 35495045  T
Q  269 tttagaatcaattatagaatcaaaagcta 297  Q
     | | || ||||| |||||||||||||||    
T  35495044 gtaaaaaacaattctagaatcaaaagcta 35495016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 250
Target Start/End: Complemental strand, 10368113 - 10368040
Alignment:
Q  177 tgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatga 250  Q
    ||||||| ||||| ||| ||||||||||||| || ||||||||||| ||| | |||||||||||||||| ||||    
T  10368113 tgtaaaattgattttgagtaaaagtgagttgaaggtaaagtgatttgtgtttagatacattcatgtaaaaatga 10368040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 9461470 - 9461552
Alignment:
Q  171 tgattatgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagttg 254  Q
    ||||||| ||||| ||||||||||||||| ||| |||||  ||||||||||| ||| ||||||||||||| ||||  |||||||    
T  9461470 tgattatttaaaattgattctgactaaaa-tgaattgcaactaaagtgatttgtgtttggatacattcatataaaagtgagttg 9461552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 2778656 - 2778584
Alignment:
Q  182 aactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagttg 254  Q
    ||||||||||  |||||||||||||| |||||||||||||||| | |||||| ||| ||| |||  |||||||    
T  2778656 aactgattctagctaaaagtgagttgaagataaagtgatttatttttggataaatttatgcaaaagtgagttg 2778584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 16972009 - 16972069
Alignment:
Q  185 tgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaa 245  Q
    |||||| |||||||||||||||| || |||| |||||| ||| || |||||||||||||||    
T  16972009 tgattcagactaaaagtgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaa 16972069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 297
Target Start/End: Original strand, 32994171 - 32994301
Alignment:
Q  171 tgattatgtaaaactgattctgactaaaagtgagttgcagataaa--gtgatttatgtatggatacattcatgtaaacatgagttg--ctgtaaatttgt 266  Q
    ||||||||||||| |||||||| || ||||||||||| || ||||   |||||||||| ||||  ||||||||||||  | | |||  || |||||||||    
T  32994171 tgattatgtaaaattgattctggctgaaagtgagttgaaggtaaaatttgatttatgtttggactcattcatgtaaaagtcatttgcactataaatttgt 32994270  T
Q  267 gttttagaatcaattatagaatcaaaagcta 297  Q
    || | | |||||||| |||| ||||||||||    
T  32994271 gtataaaaatcaattctagactcaaaagcta 32994301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 5219273 - 5219199
Alignment:
Q  171 tgattatgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaa 245  Q
    ||||||||||||| ||||| ||||||||| | |||| || |||||||||||| | | | ||||||||||| ||||    
T  5219273 tgattatgtaaaattgattttgactaaaaataagttacaaataaagtgatttgttttttgatacattcatataaa 5219199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 27218790 - 27218859
Alignment:
Q  185 tgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagttg 254  Q
    ||||| ||| |||||||||||||  |||||||| |||||||| | |||| ||| ||||||| ||||||||    
T  27218790 tgattgtgattaaaagtgagttgttgataaagtaatttatgtttagataaatttatgtaaaaatgagttg 27218859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 1373145 - 1373081
Alignment:
Q  171 tgattatgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggataca 235  Q
    ||||| ||||||| ||||| ||  ||||||||||||| || | ||||||||||||| ||||||||    
T  1373145 tgattttgtaaaattgattttggataaaagtgagttgaagttgaagtgatttatgtttggataca 1373081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 191 - 297
Target Start/End: Complemental strand, 34915200 - 34915092
Alignment:
Q  191 tgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagttg--ctgtaaatttgtgttttagaatcaattatagaat 288  Q
    |||||||||||||||||||| |||| |||||||||| || |||||||||||||||  |||||||   | |||| | |||| |||||||||||| ||||||    
T  34915200 tgactaaaagtgagttgcaggtaaaatgatttatgtttgaatacattcatgtaaaagtgagttgaattataaaatggtgtgttagaatcaattctagaat 34915101  T
Q  289 caaaagcta 297  Q
    |||||||||    
T  34915100 caaaagcta 34915092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 18325050 - 18325113
Alignment:
Q  182 aactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaa 245  Q
    |||||||| || |||||||| | ||| | |||||||||||||||||||||||||||||||||||    
T  18325050 aactgattttggctaaaagtcacttgaatataaagtgatttatgtatggatacattcatgtaaa 18325113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 297
Target Start/End: Complemental strand, 7524259 - 7524139
Alignment:
Q  179 taaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagttg--ctgtaaatttgtgttttagaat 276  Q
    ||||| ||||||| |||||||||||| |  || ||||||||||| ||| |||| ||||| |||||||  |||||||  || ||||||||||| | | |||    
T  7524259 taaaattgattctaactaaaagtgagctcaaggtaaagtgatttgtgtttggacacatttatgtaaaagtgagttgaactataaatttgtgtgtaaaaat 7524160  T
Q  277 caattatagaatcaaaagcta 297  Q
    ||||| || ||||||||||||    
T  7524159 caattctataatcaaaagcta 7524139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 254
Target Start/End: Complemental strand, 5268367 - 5268290
Alignment:
Q  177 tgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagttg 254  Q
    ||||||| |||||||| |||||||||||||| |  ||||||||||| ||| || ||| |||||||||||  |||||||    
T  5268367 tgtaaaattgattctgcctaaaagtgagttgaatgtaaagtgatttttgtttgaatatattcatgtaaaagtgagttg 5268290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 36660503 - 36660555
Alignment:
Q  258 taaatttgtgttttagaatcaattatagaatcaaaagctatacatagtagctt 310  Q
    ||||||||||| ||||| |||||| ||||||||||||||| | ||||||||||    
T  36660503 taaatttgtgtgttagattcaattttagaatcaaaagctagaaatagtagctt 36660555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 47899407 - 47899363
Alignment:
Q  171 tgattatgtaaaactgattctgactaaaagtgagttgcagataaa 215  Q
    ||||| ||||||| ||||||| |||||||||||||||||||||||    
T  47899407 tgattttgtaaaattgattcttactaaaagtgagttgcagataaa 47899363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 45660537 - 45660610
Alignment:
Q  171 tgattatgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaa 245  Q
    ||||| ||||||| ||||| ||||||||||||||||  || || |||||||||||| |||||| | |||||||||    
T  45660537 tgattctgtaaaattgattttgactaaaagtgagttaaag-tagagtgatttatgtttggataaactcatgtaaa 45660610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 1514449 - 1514369
Alignment:
Q  219 atttatgtatggatacattcatgtaaacatgagttg--ctgtaaatttgtgttttagaatcaattatagaatcaaaagcta 297  Q
    |||| ||| |||||||||||||||||| ||||||||  |  ||||||||||| | | ||||||||||| ||| ||||||||    
T  1514449 atttgtgtttggatacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaattatataataaaaagcta 1514369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 3016300 - 3016188
Alignment:
Q  185 tgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagttg--ctgtaaatttgtgttttagaatcaatta 282  Q
    ||||| ||| |||||| || ||| | ||||||||||  |||| ||||||||||||||||||  |||||||  | |||||||| ||| | |  |||||||     
T  3016300 tgattttgaataaaagagaattgaatataaagtgat--atgtttggatacattcatgtaaaagtgagttgaaccgtaaatttatgtgtaaacatcaattc 3016203  T
Q  283 tagaatcaaaagcta 297  Q
    |||||||||||||||    
T  3016202 tagaatcaaaagcta 3016188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 35961499 - 35961439
Alignment:
Q  194 ctaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagttg 254  Q
    |||||||||||||| || |||| |||||||||| |  |||||||||||||||  |||||||    
T  35961499 ctaaaagtgagttgaaggtaaaatgatttatgtttctatacattcatgtaaaagtgagttg 35961439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 48635165 - 48635197
Alignment:
Q  213 aaagtgatttatgtatggatacattcatgtaaa 245  Q
    |||||||||||||| ||||||||||||||||||    
T  48635165 aaagtgatttatgtttggatacattcatgtaaa 48635197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 36639948 - 36639877
Alignment:
Q  171 tgattatgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgta 243  Q
    ||||| ||||||||||||| ||||| ||| ||||||| |||||||||||||||||| ||||||||||||||||    
T  36639948 tgattttgtaaaactgattatgacttaaa-tgagttgaagataaagtgatttatgtttggatacattcatgta 36639877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 33843851 - 33843792
Alignment:
Q  185 tgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaa 244  Q
    |||||||| |||||||||||||| |  ||||||||||||||| |||||| ||||||||||    
T  33843851 tgattctggctaaaagtgagttggatgtaaagtgatttatgtttggatatattcatgtaa 33843792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 52965874 - 52965927
Alignment:
Q  258 taaatttgtgttttagaatcaattatagaatcaaaagctatacatagtagcttc 311  Q
    ||||||| ||| |||||||||||| ||||||||||||||||| |||||| ||||    
T  52965874 taaatttatgtgttagaatcaattttagaatcaaaagctataaatagtaacttc 52965927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 22250380 - 22250306
Alignment:
Q  171 tgattatgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaa 245  Q
    ||||| ||||||| ||||| |||||||||| |||||| |  | ||||||||||  | ||||||||||||||||||    
T  22250380 tgattctgtaaaattgattatgactaaaagcgagttgaatgtgaagtgatttacatttggatacattcatgtaaa 22250306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 41751227 - 41751277
Alignment:
Q  195 taaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaa 245  Q
    ||||||||||||  ||||||||||||| |||| || |||||||||||||||    
T  41751227 taaaagtgagttcaagataaagtgattaatgtttgaatacattcatgtaaa 41751277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 55927725 - 55927775
Alignment:
Q  195 taaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaa 245  Q
    ||||| ||||||| || ||| ||||||||||| ||||||||||||||||||    
T  55927725 taaaattgagttggagttaatgtgatttatgtttggatacattcatgtaaa 55927775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 310
Target Start/End: Complemental strand, 1616503 - 1616403
Alignment:
Q  212 taaagtgatttatgtatggatacattcatgtaaacatgagttg--ctgtaaatttgtgttttagaatcaattatagaatcaaaagctatacatagtagct 309  Q
    ||||||| ||| ||| || ||||||||||||||| ||||||||  || ||||  ||||| |  ||||||||| ||||||||||||||| | || ||||||    
T  1616503 taaagtggtttgtgtttgaatacattcatgtaaaaatgagttgaactttaaacatgtgtgtgggaatcaattctagaatcaaaagctacaaattgtagct 1616404  T
Q  310 t 310  Q
    |    
T  1616403 t 1616403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 8604594 - 8604627
Alignment:
Q  212 taaagtgatttatgtatggatacattcatgtaaa 245  Q
    ||||||||||||||| ||||||||||||||||||    
T  8604594 taaagtgatttatgtttggatacattcatgtaaa 8604627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 294
Target Start/End: Complemental strand, 45694711 - 45694643
Alignment:
Q  228 tggatacattcatgtaaacatgagtt--gctgtaaatttgtgttttagaatcaattatagaatcaaaag 294  Q
    |||||||||||||||||| |||||||   || ||||| ||||| |||||||||||| |||||| |||||    
T  45694711 tggatacattcatgtaaaaatgagttcaactataaatgtgtgtgttagaatcaattctagaattaaaag 45694643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 48045697 - 48045738
Alignment:
Q  185 tgattctgactaaaagtgagttgcagataaagtgatttatgt 226  Q
    |||||||| |||||| ||||||| ||||||||||||||||||    
T  48045697 tgattctggctaaaactgagttgaagataaagtgatttatgt 48045738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 1023848 - 1023920
Alignment:
Q  170 atgattatgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgt 242  Q
    |||||| ||||||| ||||| |  |||||||||||||| || ||||||||||| ||| |||||| ||| ||||    
T  1023848 atgattctgtaaaaatgattttagctaaaagtgagttgaaggtaaagtgatttttgtttggatatattgatgt 1023920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 38740305 - 38740369
Alignment:
Q  171 tgattatgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggataca 235  Q
    ||||| ||||||| ||||| ||  ||||||||||||| || | ||||||||||||| ||||||||    
T  38740305 tgattttgtaaaattgattttggataaaagtgagttgaagttgaagtgatttatgtttggataca 38740369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 29937601 - 29937650
Alignment:
Q  173 attatgtaaaactgattctgactaaaagtgagttgcagataaagtgattt 222  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  29937601 attatgtaaaattgattctgactaaaagtgagttgcagataaagtaattt 29937650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 310
Target Start/End: Original strand, 46219 - 46362
Alignment:
Q  171 tgattatgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagttg----ctgtaaatttgt 266  Q
    ||||| ||||||| ||||||| |||||||||||||||||  |||||| |||| ||| ||||||||||| || |||  |||||||     |  ||||||||    
T  46219 tgattctgtaaaattgattctaactaaaagtgagttgcaattaaagttatttgtgtttggatacattcgtggaaaagtgagttgaattataaaaatttgt 46318  T
Q  267 gttttagaatcaattatagaatcaaaagctatacatagtagctt 310  Q
     | |||||||| ||| ||||||||||||||| | ||||| ||||    
T  46319 ttgttagaatctattctagaatcaaaagctacaaatagttgctt 46362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 3799040 - 3798974
Alignment:
Q  185 tgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgag 251  Q
    ||||||||| ||||||||||||| ||||||| |||||||||| |  ||||||||||||||| |||||    
T  3799040 tgattctgattaaaagtgagttgaagataaaatgatttatgtttttatacattcatgtaaaaatgag 3798974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 254
Target Start/End: Complemental strand, 3289892 - 3289816
Alignment:
Q  177 tgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagttg 254  Q
    ||||||| |||||  |||| |||||||||||||||||||||||||| ||| |||||||||| |||||||  |||||||    
T  3289892 tgtaaaattgatttcgacttaaagtgagttgcagataaagtgatttgtgtttggatacatt-atgtaaaagtgagttg 3289816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 957592 - 957636
Alignment:
Q  209 agataaagtgatttatgtatggatacattcatgtaaacatgagtt 253  Q
    ||||||| |||||||||| |||||||||||||||||| |||||||    
T  957592 agataaaatgatttatgtttggatacattcatgtaaaaatgagtt 957636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 25195126 - 25195181
Alignment:
Q  189 tctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaa 245  Q
    |||| |||||||||||||| || ||||||| ||||||| ||||||||||||||||||    
T  25195126 tctgtctaaaagtgagttgaaggtaaagtgttttatgt-tggatacattcatgtaaa 25195181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 34621025 - 34620957
Alignment:
Q  186 gattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagttg 254  Q
    ||||||| ||| || ||||||| || ||||||||||||||| |||||||||| |||||||  |||||||    
T  34621025 gattctggctagaattgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttg 34620957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 34748462 - 34748394
Alignment:
Q  186 gattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagttg 254  Q
    ||||||| ||| || ||||||| || ||||||||||||||| |||||||||| |||||||  |||||||    
T  34748462 gattctggctagaattgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttg 34748394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 298
Target Start/End: Original strand, 434191 - 434297
Alignment:
Q  194 ctaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagttg--ctgtaaatttgtgttttagaatcaattatagaatcaa 291  Q
    ||||||||||||||||| |||| |||||| ||| |||||| |||| ||||||  |||||||   | ||||||| ||| | | |||||||| || ||||||    
T  434191 ctaaaagtgagttgcaggtaaaatgatttgtgtttggatatattcgtgtaaaagtgagttgaaatttaaatttatgtataaaaatcaattctaaaatcaa 434290  T
Q  292 aagctat 298  Q
    |||||||    
T  434291 aagctat 434297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 296
Target Start/End: Complemental strand, 947661 - 947594
Alignment:
Q  229 ggatacattcatgtaaacatgagttgctgtaaatttgtgttttagaatcaattatagaatcaaaagct 296  Q
    |||||||||||||||||  |||||||   || | |||||||| |||||||||| ||||||||||||||    
T  947661 ggatacattcatgtaaaagtgagttgaattataattgtgtttaagaatcaattctagaatcaaaagct 947594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 297
Target Start/End: Complemental strand, 4911020 - 4910934
Alignment:
Q  213 aaagtgatttatgtatggatacattcatgtaaacatgagttg--ctgtaaatttgtgttttagaatcaattatagaatcaaaagcta 297  Q
    |||||||||||||| |||||||||| |||||||  ||||| |  || ||||||||| | | | |||||||| |||||||||||||||    
T  4911020 aaagtgatttatgtttggatacatttatgtaaaagtgagtcgaactataaatttgtatgtgaaaatcaattctagaatcaaaagcta 4910934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 25195339 - 25195421
Alignment:
Q  213 aaagtgatttatgtatggatacattcatgtaaacatgagttgc--tgtaaatttgtgttttagaatcaattatagaatcaaaa 293  Q
    |||||||||| ||| |||||||||| |||||||  |||||||   ||||||||||||| | | ||||||||||||||| ||||    
T  25195339 aaagtgatttgtgtttggatacatttatgtaaaagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaa 25195421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 7952646 - 7952716
Alignment:
Q  171 tgattatgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatg 241  Q
    ||||| ||||||| |||| | |||||||||||||||| | |||||||||| ||| | |||||| |||||||    
T  7952646 tgattttgtaaaattgatcccgactaaaagtgagttgaatataaagtgatgtatatttggatatattcatg 7952716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 35098398 - 35098454
Alignment:
Q  180 aaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacat 236  Q
    |||| ||||| ||||||||||||||||| || |||||| ||| |||| |||||||||    
T  35098398 aaaattgattttgactaaaagtgagttgaaggtaaagtaattcatgtttggatacat 35098454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 14045 - 14116
Alignment:
Q  171 tgattatgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgt 242  Q
    ||||| ||||||| |||||||  ||| || ||||||| || ||||||||||||||| |||||||||||||||    
T  14045 tgattttgtaaaattgattcttgctacaattgagttgaaggtaaagtgatttatgtttggatacattcatgt 14116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 15220792 - 15220863
Alignment:
Q  171 tgattatgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgt 242  Q
    ||||| ||||| | ||||| |||| |||||||||||| |  ||||||||||||||| |||||||||||||||    
T  15220792 tgattttgtaatattgattatgacgaaaagtgagttgaatgtaaagtgatttatgtttggatacattcatgt 15220863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 4908926 - 4908873
Alignment:
Q  189 tctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgt 242  Q
    ||||| |||||||||||| ||  ||||||||||||||| |||||||||||||||    
T  4908926 tctgaataaaagtgagtttcatgtaaagtgatttatgtttggatacattcatgt 4908873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 3853993 - 3853933
Alignment:
Q  185 tgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaa 245  Q
    ||||| ||| ||||||||||||| |  |||| |||||||||| ||||||||||||||||||    
T  3853993 tgattttgattaaaagtgagttgaatgtaaattgatttatgtttggatacattcatgtaaa 3853933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 311
Target Start/End: Original strand, 5532963 - 5533104
Alignment:
Q  171 tgattatgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagttgc--tgtaaatttgtgt 268  Q
    ||||||||||||| ||||| | |||||||||||||| ||  |||| | |||| | | ||||||| ||||||||||  |||||||   | ||||||| |||    
T  5532963 tgattatgtaaaattgattat-actaaaagtgagttacaagtaaacttatttgtttttggatacgttcatgtaaatgtgagttgaattataaatttatgt 5533061  T
Q  269 tttagaatcaattatagaatcaaaagctatacatagtagcttc 311  Q
     ||  ||||||||  |||||||||||||| | |||||||||||    
T  5533062 gtttaaatcaatttaagaatcaaaagctacaaatagtagcttc 5533104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 1976809 - 1976869
Alignment:
Q  185 tgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaa 245  Q
    |||||||| ||| || ||||||| || ||||| || |||||| ||||||||||||||||||    
T  1976809 tgattctggctagaattgagttgaaggtaaagcgacttatgtttggatacattcatgtaaa 1976869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 16518909 - 16518849
Alignment:
Q  194 ctaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaacatgagttg 254  Q
    ||||||||||||||  | |||| |||||| ||| ||||||||||||||||||  |||||||    
T  16518909 ctaaaagtgagttgagggtaaaatgatttgtgtttggatacattcatgtaaaagtgagttg 16518849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 297
Target Start/End: Complemental strand, 43501235 - 43501151
Alignment:
Q  213 aaagtgatttatgtatggatacattcatgtaaacatgagttgctgtaaatttgtgttttagaatcaattatagaatcaaaagcta 297  Q
    |||||||||| ||| || |||||||||||||||  |||||||   || | || ||| |||||||||||| || ||||||||||||    
T  43501235 aaagtgatttgtgtttgtatacattcatgtaaaactgagttgaattataattttgtgttagaatcaattctaaaatcaaaagcta 43501151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 45000439 - 45000507
Alignment:
Q  171 tgattatgtaaaactgattctgactaaaagtgagttgcagat-aaagtgatttatgtatggatacattc 238  Q
    ||||||||||||| ||||| |  |||||||||||||| |||| |||||||||||| | || ||||||||    
T  45000439 tgattatgtaaaattgattttacctaaaagtgagttgaagatgaaagtgatttatatttgaatacattc 45000507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 117427 - 117501
Alignment:
Q  171 tgattatgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcatgtaaa 245  Q
    ||||||||||| | |||||||||||| |||||||||| || |||| ||||| |||| |||||||||  |||||||    
T  117427 tgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaa 117501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 240
Target Start/End: Complemental strand, 29923054 - 29922985
Alignment:
Q  171 tgattatgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcat 240  Q
    ||||||||||||| ||||| |||||| |||||||||| |  | |||| |||||||| |||||||||||||    
T  29923054 tgattatgtaaaattgattttgactataagtgagttgaatgtgaagtaatttatgtttggatacattcat 29922985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 35138954 - 35139023
Alignment:
Q  171 tgattatgtaaaactgattctgactaaaagtgagttgcagataaagtgatttatgtatggatacattcat 240  Q
    ||||||||||||  |||||||| |||||| ||||||| || |||| ||||||||||   |||||||||||    
T  35138954 tgattatgtaaacttgattctgtctaaaattgagttgaaggtaaaatgatttatgttcagatacattcat 35139023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 2937602 - 2937654
Alignment:
Q  258 taaatttgtgttttagaatcaattatagaatcaaaagctatacatagtagctt 310  Q
    ||||||||||| ||| |||||||| |||||||||| |||| | ||||||||||    
T  2937602 taaatttgtgtgttataatcaattctagaatcaaaggctacaaatagtagctt 2937654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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