View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2146_low_14 (Length: 313)

Name: NF2146_low_14
Description: NF2146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2146_low_14
NF2146_low_14
[»] chr8 (9 HSPs)
chr8 (28-270)||(18668979-18669221)
chr8 (117-270)||(13117759-13117913)
chr8 (188-270)||(13135567-13135649)
chr8 (194-271)||(13009786-13009863)
chr8 (189-269)||(13011028-13011108)
chr8 (194-268)||(9577687-9577761)
chr8 (194-270)||(26442007-26442083)
chr8 (41-111)||(13116244-13116314)
chr8 (201-261)||(11537262-11537322)
[»] chr7 (5 HSPs)
chr7 (195-270)||(41866260-41866335)
chr7 (194-269)||(28261753-28261828)
chr7 (194-268)||(48918555-48918629)
chr7 (201-261)||(31656835-31656895)
chr7 (201-261)||(29218221-29218281)
[»] chr5 (3 HSPs)
chr5 (195-268)||(15369476-15369549)
chr5 (195-268)||(16946302-16946375)
chr5 (201-269)||(19732067-19732135)
[»] chr2 (2 HSPs)
chr2 (189-269)||(2388802-2388882)
chr2 (201-261)||(35514112-35514171)
[»] scaffold0971 (1 HSPs)
scaffold0971 (194-269)||(1335-1410)
[»] chr6 (1 HSPs)
chr6 (195-270)||(29022863-29022938)
[»] chr4 (6 HSPs)
chr4 (194-269)||(23458688-23458763)
chr4 (193-268)||(56435055-56435130)
chr4 (194-268)||(56191433-56191507)
chr4 (195-268)||(42636393-42636466)
chr4 (201-261)||(20916804-20916863)
chr4 (201-260)||(31032755-31032813)
[»] chr1 (1 HSPs)
chr1 (195-268)||(45764995-45765068)
[»] scaffold0899 (1 HSPs)
scaffold0899 (194-268)||(2452-2526)
[»] chr3 (2 HSPs)
chr3 (201-261)||(26379277-26379336)
chr3 (201-261)||(29383688-29383747)


Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 28 - 270
Target Start/End: Complemental strand, 18669221 - 18668979
Alignment:
Q  28 caaacggtcagagaatgataaaacttgtaattctctataataatctatggataataatagaaataaatctgatgtggtagtgtgcatgatattactgaac 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18669221 caaacggtcagagaatgataaaacttgtaattctctataataatctatggataataatagaaataaatcttatgtggtagtgtgcatgatattactgaac 18669122  T
Q  128 ttctatttaggcctaatttcatttttacagcgaacaaatacaaacagttttaaaatttgacacaagtggtttcgtggtgtagttggttatcacatcagtc 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  18669121 ttctatttaggcctaatttcatttttacagcgaacaaatacaaacagttttaaaatttgactcaagtggtttcgtggtgtagttggttatcacgtcagtc 18669022  T
Q  228 taacacactgaaggtccccagttcgagcctgggcgaagccatt 270  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18669021 taacacactgaaggtccccagttcgagcctgggcgaagccatt 18668979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 117 - 270
Target Start/End: Original strand, 13117759 - 13117913
Alignment:
Q  117 tattactgaacttctatttaggcctaatttcatttttacagcgaacaaatacaaacagttttaaaatt-tgacacaagtggtttcgtggtgtagttggtt 215  Q
    |||||||||||||||||||||||||||| |||||| ||||||||| |||||   | ||| | ||| || | | ||||  |||||||||||||||||||||    
T  13117759 tattactgaacttctatttaggcctaatctcatttatacagcgaataaatatccaaagtgtaaaacttctaatacaaagggtttcgtggtgtagttggtt 13117858  T
Q  216 atcacatcagtctaacacactgaaggtccccagttcgagcctgggcgaagccatt 270  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13117859 atcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccatt 13117913  T

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Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 188 - 270
Target Start/End: Original strand, 13135567 - 13135649
Alignment:
Q  188 cacaagtggtttcgtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggcgaagccatt 270  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13135567 cacaaatggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccatt 13135649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 13009863 - 13009786
Alignment:
Q  194 tggtttcgtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggcgaagccattg 271  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13009863 tggtttcgtggtgtagttggttattacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccattg 13009786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 189 - 269
Target Start/End: Complemental strand, 13011108 - 13011028
Alignment:
Q  189 acaagtggtttcgtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggcgaagccat 269  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||    
T  13011108 acaaatggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcaaacctgggcgaagccat 13011028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 194 - 268
Target Start/End: Original strand, 9577687 - 9577761
Alignment:
Q  194 tggtttcgtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 268  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||    
T  9577687 tggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcaaacctgggcgaagcca 9577761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 26442083 - 26442007
Alignment:
Q  194 tggtttcgtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggcgaagccatt 270  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||| || |||||||||||||    
T  26442083 tggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagccatt 26442007  T

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Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 13116244 - 13116314
Alignment:
Q  41 aatgataaaacttgtaattctctataataatctatggataataatagaaataaatctgatgtggtagtgtg 111  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| ||||||||||||||    
T  13116244 aatgataaaacttgtaattctctataatattctattgataataatataaataaatcggatgtggtagtgtg 13116314  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 11537262 - 11537322
Alignment:
Q  201 gtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggc 261  Q
    |||||||||| |||||||||   ||||| |||||||  ||||||||||||||| |||||||    
T  11537262 gtggtgtagtcggttatcacgctagtctcacacactagaggtccccagttcgaacctgggc 11537322  T

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Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 41866335 - 41866260
Alignment:
Q  195 ggtttcgtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggcgaagccatt 270  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41866335 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccatt 41866260  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 194 - 269
Target Start/End: Complemental strand, 28261828 - 28261753
Alignment:
Q  194 tggtttcgtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggcgaagccat 269  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  28261828 tggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttctagcctgggcgaagccat 28261753  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 268
Target Start/End: Complemental strand, 48918629 - 48918555
Alignment:
Q  194 tggtttcgtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 268  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||| || |||||||||||    
T  48918629 tggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 48918555  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 31656895 - 31656835
Alignment:
Q  201 gtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggc 261  Q
    |||||||||||||||||||| | ||||| ||||||| |||||||||||||||| |||||||    
T  31656895 gtggtgtagttggttatcacgttagtctcacacactaaaggtccccagttcgaacctgggc 31656835  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 29218281 - 29218221
Alignment:
Q  201 gtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggc 261  Q
    ||||||||||||||||||||   ||||| |||||||  ||||||||||||||| |||||||    
T  29218281 gtggtgtagttggttatcacgctagtctcacacactagaggtccccagttcgaacctgggc 29218221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 15369476 - 15369549
Alignment:
Q  195 ggtttcgtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 268  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15369476 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 15369549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 195 - 268
Target Start/End: Complemental strand, 16946375 - 16946302
Alignment:
Q  195 ggtttcgtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 268  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||| | |||||||||||    
T  16946375 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgagtccgggcgaagcca 16946302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 269
Target Start/End: Complemental strand, 19732135 - 19732067
Alignment:
Q  201 gtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggcgaagccat 269  Q
    |||||||||||||||||||| |||||||||||||||||||||| || |||| || | |||||| |||||    
T  19732135 gtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcaagtccgggcgacgccat 19732067  T

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Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 189 - 269
Target Start/End: Original strand, 2388802 - 2388882
Alignment:
Q  189 acaagtggtttcgtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggcgaagccat 269  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||| || ||||||||||||    
T  2388802 acaaatggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagccat 2388882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 35514112 - 35514171
Alignment:
Q  201 gtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggc 261  Q
    |||||||||| ||||||||| ||||||| |||||||||||||| ||||||||| |||||||    
T  35514112 gtggtgtagt-ggttatcacgtcagtcttacacactgaaggtctccagttcgatcctgggc 35514171  T

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Target: scaffold0971 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0971
Description:

Target: scaffold0971; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 194 - 269
Target Start/End: Complemental strand, 1410 - 1335
Alignment:
Q  194 tggtttcgtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggcgaagccat 269  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||| || ||||||||||||    
T  1410 tggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagccat 1335  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 195 - 270
Target Start/End: Original strand, 29022863 - 29022938
Alignment:
Q  195 ggtttcgtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggcgaagccatt 270  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| || |||||| || |||||||||||||    
T  29022863 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagccatt 29022938  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 194 - 269
Target Start/End: Complemental strand, 23458763 - 23458688
Alignment:
Q  194 tggtttcgtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggcgaagccat 269  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||| || ||||||||||||    
T  23458763 tggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagccat 23458688  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 56435055 - 56435130
Alignment:
Q  193 gtggtttcgtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 268  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||| || |||||||||||    
T  56435055 gtggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 56435130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 268
Target Start/End: Complemental strand, 56191507 - 56191433
Alignment:
Q  194 tggtttcgtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 268  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||| || |||||||||||    
T  56191507 tggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 56191433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 42636393 - 42636466
Alignment:
Q  195 ggtttcgtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 268  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| || |||||| || |||||||||||    
T  42636393 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 42636466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 20916863 - 20916804
Alignment:
Q  201 gtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggc 261  Q
    |||||||||| ||||||||| ||||||| |||||||||||||| ||||||||| |||||||    
T  20916863 gtggtgtagt-ggttatcacgtcagtcttacacactgaaggtctccagttcgatcctgggc 20916804  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 31032755 - 31032813
Alignment:
Q  201 gtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctggg 260  Q
    |||||||||| ||||||||| ||||||| |||||||||||||| ||||||||| ||||||    
T  31032755 gtggtgtagt-ggttatcacgtcagtcttacacactgaaggtctccagttcgatcctggg 31032813  T

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Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 195 - 268
Target Start/End: Complemental strand, 45765068 - 45764995
Alignment:
Q  195 ggtttcgtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 268  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| || |||||| || |||||||||||    
T  45765068 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 45764995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0899 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0899
Description:

Target: scaffold0899; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 268
Target Start/End: Original strand, 2452 - 2526
Alignment:
Q  194 tggtttcgtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 268  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||| |||||| || || |||||||||||    
T  2452 tggtttagtggtgtagttggttatcacgtcagtctaacacactgaaggtctccagtttgaaccagggcgaagcca 2526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 26379336 - 26379277
Alignment:
Q  201 gtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggc 261  Q
    |||||||||| ||||||||| ||||||| |||||||||||||| ||||||||| |||||||    
T  26379336 gtggtgtagt-ggttatcacgtcagtcttacacactgaaggtctccagttcgatcctgggc 26379277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 29383688 - 29383747
Alignment:
Q  201 gtggtgtagttggttatcacatcagtctaacacactgaaggtccccagttcgagcctgggc 261  Q
    |||||||||| ||||||||| ||||||| |||||||||||||| ||||||||| |||||||    
T  29383688 gtggtgtagt-ggttatcacgtcagtcttacacactgaaggtctccagttcgatcctgggc 29383747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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