View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2146_low_16 (Length: 297)
Name: NF2146_low_16
Description: NF2146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2146_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 38073823 - 38074101
Alignment:
| Q |
1 |
taccttctcatgtgtccaagggacgcaaatagaatatcttggagctcaaaaggtcatagtaataaaatacaagctgctttgttatttctcaatgatagtt |
100 |
Q |
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| T |
38073823 |
taccttctcatgtgtccaagggacgcaaatagaatttcttggagctcaaaaggtcatagtaataaaatacaagctgctttgttatttctcaatgatagtt |
38073922 |
T |
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| Q |
101 |
atcttttatatgtgtacttttaatttatactcatacttaagaaaggaatgaatgaatgcttatagattagcagtggcagattcataagcttattgtaaaa |
200 |
Q |
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| T |
38073923 |
atcttttatatgtgtacttttaatttatactcatacttaagaaaggaatgaatgaatgcttatagattagcagtggcagattcataagcttattgtaaaa |
38074022 |
T |
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| Q |
201 |
tgttgagaagtatggaaattcccaacaaatagaaaaataaaatgatagaaaggtttattttggaattgatagtatgaag |
279 |
Q |
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| T |
38074023 |
tgttgagaagtatggaaattcccaacaaatagaaaaataaaatgatagaaaggtttattttggaattgatagtatgaag |
38074101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 38087333 - 38087419
Alignment:
| Q |
1 |
taccttctcatgtgtccaagggacgcaaatagaatatcttggagctcaaaaggtcatagtaataaaatacaagctgctttgttattt |
87 |
Q |
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| T |
38087333 |
taccttctcatgtgtccaagggacgcaaatagagttttctggagtggcataggtcataatgataaaatagtagctgctttgttattt |
38087419 |
T |
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