View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2146_low_20 (Length: 247)
Name: NF2146_low_20
Description: NF2146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2146_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 1442899 - 1443138
Alignment:
| Q |
1 |
attttaaacgatacttattatgaaacacatgaataattctctttagaaatttaaaatgagaaagatcatcataaataagagatgtgaggtgacataattt |
100 |
Q |
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| T |
1442899 |
attttaaacgatacttattatgaaacacatgaataattctctttagaaatttaaaatgagaaagatcatcataaataagagatgtgaggtgacataattt |
1442998 |
T |
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| Q |
101 |
agggttgataaatttcttaaccacttagcccaactctgagatggttaccaaatttgcttgatataccacatcttgagacacgtctcactggaaggaagat |
200 |
Q |
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| T |
1442999 |
agggttgataaatttcttaaccacttagcccaactctgagatggttaccaaatttgcttgatataccacatcttgagacacgtctcactggaaggaagat |
1443098 |
T |
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| Q |
201 |
gagagaaagatagttgtatattatgaaataataacctatg |
240 |
Q |
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| T |
1443099 |
gagagaaagatagttgtatattatgaaataataacctatg |
1443138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 223
Target Start/End: Original strand, 1450887 - 1451072
Alignment:
| Q |
54 |
aaatgagaaagatcatcataaataagagatg-tgaggtgacataatttagggttgataaat--ttcttaaccacttagcccaa-----ctctgagatggt |
145 |
Q |
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| T |
1450887 |
aaatgggaaagatcatcataaataagagatgttaaggtgacatactttagggttgatcaattatttctgaccacttaggccaaattgcatttgagatggt |
1450986 |
T |
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| Q |
146 |
taccaaatttgcttgatat--------accacatcttgagacacgtctcactggaaggaagatgagagaaagatagttgtatatta |
223 |
Q |
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| T |
1450987 |
taccaaatttgcttgatatgttcacaaaccacatcttgagacacaggacactagaaggaagatgagagaaacatagttgcatatta |
1451072 |
T |
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