View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2146_low_24 (Length: 214)
Name: NF2146_low_24
Description: NF2146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2146_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 28931618 - 28931437
Alignment:
| Q |
15 |
aagaatcaaacataggagacaataaaatctataagtgagaggaaagaaaacctaagnnnnnnncaacagagcaagctttttcatgtctgagcatgaaagg |
114 |
Q |
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| T |
28931618 |
aagaatcaaacatagcagacaataaaatctataagtgagaggaaagaaaacctaagaaaaaaacaacagagcaagctttttcatgtctgagcatgaaagg |
28931519 |
T |
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| Q |
115 |
ttagatctattccttcatttgttttaggaaggtgatttaaatatctagtctcataactcaattaaagggttttcctgtatac |
196 |
Q |
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| T |
28931518 |
ttagatctattccttcatttgttttaggaaggtgatttaaatatctagtctcataactcaattaaagggttttcctgtatac |
28931437 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 195
Target Start/End: Original strand, 35122609 - 35122722
Alignment:
| Q |
80 |
acagagcaagctttttcatgtctgagcatgaaaggttagatctattccttcatttgttttaggaaggtgatttaaatatctagtctcataactcaattaa |
179 |
Q |
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||||| |||||||||| ||||| ||||||||||||| ||||||||| |||||||| | | | ||||||||||||| |||||| |||||||| ||| |
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| T |
35122609 |
acagaacaagcttttt-atgtcctagcatgaaaggttggatctattctctcatttgtctcggaacggtgatttaaatacagagtctcgtaactcaa-taa |
35122706 |
T |
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| Q |
180 |
agggttttcctgtata |
195 |
Q |
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| T |
35122707 |
agggtttccctgtata |
35122722 |
T |
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