View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2146_low_3 (Length: 509)

Name: NF2146_low_3
Description: NF2146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2146_low_3
NF2146_low_3
[»] chr5 (12 HSPs)
chr5 (213-494)||(25981247-25981528)
chr5 (204-494)||(3059081-3059370)
chr5 (213-494)||(34225785-34226067)
chr5 (297-494)||(14395839-14396036)
chr5 (217-321)||(26326941-26327045)
chr5 (216-302)||(33727426-33727512)
chr5 (216-302)||(33798705-33798791)
chr5 (228-301)||(11773293-11773366)
chr5 (216-301)||(13475557-13475642)
chr5 (213-263)||(14395786-14395836)
chr5 (216-285)||(971737-971806)
chr5 (228-273)||(39421297-39421342)
[»] chr4 (7 HSPs)
chr4 (212-494)||(2917616-2917897)
chr4 (6-67)||(24272499-24272564)
chr4 (216-301)||(47286607-47286692)
chr4 (216-285)||(4940061-4940130)
chr4 (216-285)||(15545053-15545122)
chr4 (211-277)||(53238464-53238530)
chr4 (225-281)||(26736571-26736627)
[»] chr1 (10 HSPs)
chr1 (213-494)||(50158702-50158981)
chr1 (213-494)||(38741095-38741376)
chr1 (215-391)||(33403639-33403824)
chr1 (213-337)||(2123579-2123703)
chr1 (216-325)||(11943668-11943777)
chr1 (402-494)||(2123706-2123798)
chr1 (216-301)||(32942269-32942354)
chr1 (216-285)||(37188202-37188271)
chr1 (211-251)||(18431237-18431277)
chr1 (216-251)||(5458623-5458658)
[»] chr8 (7 HSPs)
chr8 (213-494)||(29246832-29247112)
chr8 (226-301)||(35702120-35702195)
chr8 (216-295)||(7351396-7351475)
chr8 (219-290)||(14443048-14443119)
chr8 (216-285)||(11920631-11920700)
chr8 (220-302)||(5548508-5548592)
chr8 (216-269)||(16428095-16428148)
[»] chr3 (10 HSPs)
chr3 (213-391)||(50386050-50386228)
chr3 (213-494)||(497689-497971)
chr3 (216-285)||(7147179-7147248)
chr3 (216-376)||(27237346-27237506)
chr3 (216-285)||(22418844-22418913)
chr3 (216-285)||(43055292-43055361)
chr3 (216-285)||(49430482-49430551)
chr3 (213-325)||(3541693-3541804)
chr3 (216-280)||(40154756-40154820)
chr3 (459-494)||(50385965-50386000)
[»] chr7 (13 HSPs)
chr7 (215-391)||(46912926-46913102)
chr7 (216-325)||(36616868-36616977)
chr7 (214-322)||(46357783-46357891)
chr7 (216-283)||(42896852-42896919)
chr7 (424-494)||(46913331-46913401)
chr7 (223-303)||(18104496-18104576)
chr7 (217-301)||(33081854-33081938)
chr7 (220-283)||(4519742-4519805)
chr7 (216-285)||(46457683-46457752)
chr7 (218-281)||(5848787-5848850)
chr7 (220-285)||(28998311-28998376)
chr7 (226-301)||(31670593-31670668)
chr7 (217-283)||(43998120-43998186)
[»] chr2 (3 HSPs)
chr2 (213-363)||(917949-918099)
chr2 (213-283)||(41911797-41911867)
chr2 (228-286)||(9929322-9929380)
[»] chr6 (5 HSPs)
chr6 (211-323)||(595701-595813)
chr6 (218-301)||(13850731-13850814)
chr6 (216-285)||(6174377-6174446)
chr6 (216-304)||(843636-843724)
chr6 (216-268)||(16693593-16693645)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 213 - 494
Target Start/End: Complemental strand, 25981528 - 25981247
Alignment:
Q  213 catgggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaatgttatagata 312  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  25981528 catgggcggatctagacattcgatattggtgtggcaaaactttcaaagcaactatatatattaacaaagtaaaacattgataccttaaatgctatagata 25981429  T
Q  313 aatggtttgggtggctgcgttttaccttgttgttactagtttgattgccagcaacacccttttttaatacaagtaatttnnnnnnnnnncatcaaaatag 412  Q
    | ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||          |||||||||||    
T  25981428 agtggtttgggtgactgcgttttaccttgttgttactagttcgattcccagcaacacccttttttaatacaaataatttaaaaaaaaaacatcaaaatag 25981329  T
Q  413 caactcgtcaggaatcaaactcagcacattcaattcgtccatcaaaacataccattgagccaagaaagaagttctaatatgt 494  Q
    |||| || |||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||    
T  25981328 caacacgccaggaatcgaactcagcacattcaattcgtccatcagcacataccattgagccaagaaagaagttctgatatgt 25981247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 204 - 494
Target Start/End: Complemental strand, 3059370 - 3059081
Alignment:
Q  204 ctctccattcatgggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaatg 303  Q
    |||| ||| |||||| ||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| |||||||    
T  3059370 ctctacatccatgggtggatctagacatttgatattggtgtggcaaaactttcaaagtaactatatatattaacaaagtaaaacattgataccttaaatg 3059271  T
Q  304 ttatagataaatggtttgggtggctgcgttttaccttgttgttactagtttgattgccagcaacacccttttttaatacaagtaatttnnnnnnnnnnca 403  Q
     ||||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||          ||    
T  3059270 ctatagataagtgatttgggtgactgcgttttaccttgttgttactagtttgattcccagcaacacccttttttaatacaaataattt-taaaaaaaaca 3059172  T
Q  404 tcaaaatagcaactcgtcaggaatcaaactcagcacattcaattcgtccatcaaaacataccattgagccaagaaagaagttctaatatgt 494  Q
    ||||||||||||| || |||||||| |||||| |||||||||||||||||||   |||||||| |||||||||||||||||||||||||||    
T  3059171 tcaaaatagcaacacgccaggaatcgaactcaacacattcaattcgtccatccgcacataccactgagccaagaaagaagttctaatatgt 3059081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 213 - 494
Target Start/End: Complemental strand, 34226067 - 34225785
Alignment:
Q  213 catgggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaatgttatagata 312  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||| ||||||  ||||||||||||||||    
T  34226067 catgggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaagtaaaactttgataacttaaatgttatagata 34225968  T
Q  313 aatggtttgggtggctgcgttttaccttgttgttactagtttgattgccagcaacacccttttttaatacaagtaatttnnnnnnnnnncatcaaaatag 412  Q
    | ||||||||||| |||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||          |||||||||||    
T  34225967 agtggtttgggtgactgcattttaccttgttgttactagttcgattcccagcaacacccttttttaatacaaataattt-aaaaaaaaacatcaaaatag 34225869  T
Q  413 caactcgtcaggaatcaaactcagcacatt--caattcgtccatcaaaacataccattgagccaagaaagaagttctaatatgt 494  Q
    |||| |  ||||||||||||||| ||||||  |||||| ||||||   |||||||| | |||||||||||||||||||||||||    
T  34225868 caacacaccaggaatcaaactcaacacattcacaattcatccatccgcacataccactaagccaagaaagaagttctaatatgt 34225785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 297 - 494
Target Start/End: Original strand, 14395839 - 14396036
Alignment:
Q  297 ttaaatgttatagataaatggtttgggtggctgcgttttaccttgttgttactagtttgattgccagcaacacccttttttaatacaagtaatttnnnnn 396  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||         
T  14395839 ttaaatgctatagataaatggtttgggtggctgcgttttaccttgttgttactagttcaattcccagcaacacccttttttaatacaagtaattt-aaaa 14395937  T
Q  397 nnnnncatcaaaatagcaactcgtcaggaatcaaactcagcacattcaattcgtccatcaaaacataccattgagccaagaaagaagttc-taatatgt 494  Q
         |||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||    
T  14395938 aaaaacatcaaaatagcaactcgccaggaatcaaactcagcacattcaattcgtccatcagcacataccattgagccaagaaagaagttcataatatgt 14396036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 217 - 321
Target Start/End: Complemental strand, 26327045 - 26326941
Alignment:
Q  217 ggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaatgttatagataaatg 316  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||| ||| ||||||||||||||| |||||||| || |||||   |||||| |||||    
T  26327045 ggcggatctagacatttgatattggtgtagcaaaactttcaaagaaactatgtatattaacaaagtagaacattgacactttaaacaatatagaaaaatg 26326946  T
Q  317 gtttg 321  Q
    |||||    
T  26326945 gtttg 26326941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 302
Target Start/End: Complemental strand, 33727512 - 33727426
Alignment:
Q  216 gggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaat 302  Q
    ||||||||||||||||||||||||||| ||| ||||| ||||||  || ||||||||||||||||||| | |||||| || ||||||    
T  33727512 gggcggatctagacatttgatattggtttggtaaaactttcaaaataactatatatattaacaaagtagaccattgacactttaaat 33727426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 302
Target Start/End: Complemental strand, 33798791 - 33798705
Alignment:
Q  216 gggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaat 302  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||  || ||||| ||||||||||||| | |||||| || ||||||    
T  33798791 gggcggatctagacatttgatattggtttggcaaaactttcaaaacaactatatgtattaacaaagtagaccattgacactttaaat 33798705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 228 - 301
Target Start/End: Complemental strand, 11773366 - 11773293
Alignment:
Q  228 acatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaa 301  Q
    ||||||||| ||||||||||||||  ||||||| ||||||||||||||| |||||||| ||||||||| |||||    
T  11773366 acatttgattttggtgtggcaaaattttcaaagcaattatatatattaataaagtaaagcattgataccttaaa 11773293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 13475557 - 13475642
Alignment:
Q  216 gggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaa 301  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||  || ||||| |||||||||||||||  |||||||| |||||    
T  13475557 gggcggatccagacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaa 13475642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 14395786 - 14395836
Alignment:
Q  213 catgggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaa 263  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  14395786 catgggcggatctagacatttgatattggtgcggcaaaactttcaaagaaa 14395836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 971737 - 971806
Alignment:
Q  216 gggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaa 285  Q
    ||||||||| |||||||||||| | |||||||||||| ||||||  || ||||| |||||||||||||||    
T  971737 gggcggatccagacatttgataatagtgtggcaaaacattcaaatcaactatatttattaacaaagtaaa 971806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 228 - 273
Target Start/End: Complemental strand, 39421342 - 39421297
Alignment:
Q  228 acatttgatattggtgtggcaaaacgttcaaagaaattatatatat 273  Q
    ||||||||||||||||||||||||| ||||||| || |||||||||    
T  39421342 acatttgatattggtgtggcaaaactttcaaagcaactatatatat 39421297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 168; Significance: 8e-90; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 212 - 494
Target Start/End: Original strand, 2917616 - 2917897
Alignment:
Q  212 tcatgggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaatgttatagat 311  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||  ||||||| |||||||    
T  2917616 tcatgggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaagtaaaacattgatatcttaaatgctatagat 2917715  T
Q  312 aaatggtttgggtggctgcgttttaccttgttgttactagtttgattgccagcaacacccttttttaatacaagtaatttnnnnnnnnnncatcaaaata 411  Q
    || ||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||          ||||||||||    
T  2917716 aagtggtttgggtgactgcattttaccttgttgttactagtttgattcccagcaacacccttttttaatacaaataattt-aaaaaaaaacatcaaaata 2917814  T
Q  412 gcaactcgtcaggaatcaaactcagcacattcaattcgtccatcaaaacataccattgagccaagaaagaagttctaatatgt 494  Q
    ||||| |  |||||||||||||||||||||||||||| ||||||   |||||||| |||||||||||||||||||| ||||||    
T  2917815 gcaacacaccaggaatcaaactcagcacattcaattcatccatccgcacataccactgagccaagaaagaagttctgatatgt 2917897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 24272499 - 24272564
Alignment:
Q  6 acatcatcaaataacacctggta----agccgatttaatatttcataatgtggaacaaatttacaa 67  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||    
T  24272499 acatcatcaaataacacctggtacgtaagccgatttaatatttcataatgtggaacaaatttacaa 24272564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 47286607 - 47286692
Alignment:
Q  216 gggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaa 301  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||  || ||||| |||||||||||||||  |||||||| |||||    
T  47286607 gggcggatccagacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaa 47286692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 4940130 - 4940061
Alignment:
Q  216 gggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaa 285  Q
    ||||||||||||| | ||||||||||||||||||||  | ||||| || |||||||||||||||||||||    
T  4940130 gggcggatctagagagttgatattggtgtggcaaaatttgcaaaggaactatatatattaacaaagtaaa 4940061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 15545122 - 15545053
Alignment:
Q  216 gggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaa 285  Q
    ||||||||| ||||| ||||||||||||||||||||  | ||||| || |||||||||||||||||||||    
T  15545122 gggcggatccagacagttgatattggtgtggcaaaatttgcaaagcaactatatatattaacaaagtaaa 15545053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 277
Target Start/End: Complemental strand, 53238530 - 53238464
Alignment:
Q  211 ttcatgggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaac 277  Q
    |||||| |||||||||||| || |||||||||||| | |||   ||||||||| |||||||||||||    
T  53238530 ttcatgtgcggatctagactttcgatattggtgtgactaaaatatcaaagaaactatatatattaac 53238464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 281
Target Start/End: Complemental strand, 26736627 - 26736571
Alignment:
Q  225 tagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaag 281  Q
    ||||| ||||||||||||||||| |||   ||||||||| |||||||||||| ||||    
T  26736627 tagacttttgatattggtgtggctaaaatatcaaagaaactatatatattaataaag 26736571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 167; Significance: 3e-89; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 213 - 494
Target Start/End: Complemental strand, 50158981 - 50158702
Alignment:
Q  213 catgggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaatgttatagata 312  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||  |||||||||||||||||||||||||||||| ||||||| ||||||||    
T  50158981 catgggcggatctagacatttgatattggtgtggcaaaactttcaaagcaaccatatatattaacaaagtaaaacattgataccttaaatgctatagata 50158882  T
Q  313 aatggtttgggtggctgcgttttaccttgttgttactagtttgattgccagcaacacccttttttaatacaagtaatttnnnnnnnnnncatcaaaatag 412  Q
    | |||||||||||  || |||||||||||||||||||||||  ||| ||||||||||||||||||||||||| ||||||          |||||||||||    
T  50158881 agtggtttgggtgattgtgttttaccttgttgttactagttcaattcccagcaacacccttttttaatacaaataattt--aaaaaaaacatcaaaatag 50158784  T
Q  413 caactcgtcaggaatcaaactcagcacattcaattcgtccatcaaaacataccattgagccaagaaagaagttctaatatgt 494  Q
    |||| || || ||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  50158783 caacacgccaagaatcgaactcagcacattcaattcatccatcaacacataccattgagccaagaaagaagttctaatatgt 50158702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 213 - 494
Target Start/End: Complemental strand, 38741376 - 38741095
Alignment:
Q  213 catgggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaatgttatagata 312  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  38741376 catgggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaagtaaaacattgataccttaaatgctatagata 38741277  T
Q  313 aatggtttgggtggctgcgttttaccttgttgttactagtttgattgccagcaacaccctt-ttttaatacaagtaatttnnnnnnnnnncatcaaaata 411  Q
    | |||||||||||  || |||||||||| ||||||||||||  ||| |||||||||||||| ||||||||||| ||||||           |||||||||    
T  38741276 agtggtttgggtgattgtgttttaccttattgttactagttcaattcccagcaacaccctttttttaatacaaataatttaaaaaaatat-atcaaaata 38741178  T
Q  412 gcaactcgtcaggaatcaaactcagcacattcaattcgtccatcaaaacataccattgagccaagaaagaagttctaatatgt 494  Q
    | ||| |  || ||||  |||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||    
T  38741177 ggaacacaccaagaattgaactcagcacattcaattcgtccatcagcacataccactgagccaagaaagaagttctaatatgt 38741095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 215 - 391
Target Start/End: Complemental strand, 33403824 - 33403639
Alignment:
Q  215 tgggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaatgttatagataaa 314  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||| ||| ||||||| |||||||||     
T  33403824 tgggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaagtaaaacattgttaccttaaatgctatagataag 33403725  T
Q  315 tggtttgggtggctgcgttttaccttgttgttact---------agtttgattgccagcaacacccttttttaatacaagtaattt 391  Q
    ||||||||||| ||| |||||||||||||||||||         |||| |||| ||||||||||||||||||||||||| ||||||    
T  33403724 tggtttgggtgactgtgttttaccttgttgttactagttcgactagttcgattcccagcaacacccttttttaatacaaataattt 33403639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 213 - 337
Target Start/End: Original strand, 2123579 - 2123703
Alignment:
Q  213 catgggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaatgttatagata 312  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||| || ||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  2123579 catgggcggatctagacatttgatattggtgtgacaaaactttcaaagcaactatatatattaacaaagtaaaacattgataccttaaatgctatagata 2123678  T
Q  313 aatggtttgggtggctgcgttttac 337  Q
    | ||||||| ||| |||||||||||    
T  2123679 agtggtttgagtgactgcgttttac 2123703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 216 - 325
Target Start/End: Original strand, 11943668 - 11943777
Alignment:
Q  216 gggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaatgttatagataaat 315  Q
    |||||||||||||||||||||||| |||||||||||  |||||| ||| |||||||||||||||||||||||||||| || ||||||| || | ||||||    
T  11943668 gggcggatctagacatttgatattagtgtggcaaaattttcaaacaaactatatatattaacaaagtaaaacattgacaccttaaatgctacatataaat 11943767  T
Q  316 ggtttgggtg 325  Q
    ||||||||||    
T  11943768 ggtttgggtg 11943777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 402 - 494
Target Start/End: Original strand, 2123706 - 2123798
Alignment:
Q  402 catcaaaatagcaactcgtcaggaatcaaactcagcacattcaattcgtccatcaaaacataccattgagccaagaaagaagttctaatatgt 494  Q
    ||||||||||||||| || | |||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||    
T  2123706 catcaaaatagcaacacgccgggaatcgaactcagcacattcaattcgtccatcagcacataccattgagccaagaaagaaattctaatatgt 2123798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 32942354 - 32942269
Alignment:
Q  216 gggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaa 301  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||  || ||||| |||||||||||||||  |||||||| |||||    
T  32942354 gggcggatccagacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaa 32942269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 37188271 - 37188202
Alignment:
Q  216 gggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaa 285  Q
    ||||||||| ||||| ||||||||||||||||||||  | ||||| || |||||||||||||||||||||    
T  37188271 gggcggatccagacaattgatattggtgtggcaaaatttgcaaagcaactatatatattaacaaagtaaa 37188202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 18431237 - 18431277
Alignment:
Q  211 ttcatgggcggatctagacatttgatattggtgtggcaaaa 251  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  18431237 ttcatgggcggatctagacatttcatattagtgtggcaaaa 18431277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 5458623 - 5458658
Alignment:
Q  216 gggcggatctagacatttgatattggtgtggcaaaa 251  Q
    |||||||| |||||||||||||||||||||||||||    
T  5458623 gggcggatgtagacatttgatattggtgtggcaaaa 5458658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 148; Significance: 7e-78; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 213 - 494
Target Start/End: Original strand, 29246832 - 29247112
Alignment:
Q  213 catgggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaatgttatagata 312  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||| || ||||||||||||||||||| ||||||||||| ||||||| ||||||||    
T  29246832 catgggcggatctagacatttgatattgatgtggcaaaactttcaaagcaactatatatattaacaaagtataacattgataccttaaatgctatagata 29246931  T
Q  313 aatggtttgggtggctgcgttttaccttgttgttactagtttgattgccagcaacacccttttttaatacaagtaatttnnnnnnnnnncatcaaaatag 412  Q
    | |||||||||||  || |||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||          |||||||||||    
T  29246932 agtggtttgggtgattgtgttttaccttgttgttactagtttgattcccaacaacacccttttttaatacaaataa-ttaaaaaaaaaacatcaaaatag 29247030  T
Q  413 caactcgtcaggaatcaaactcagcacattcaattcgtccatcaaaacataccattgagccaagaaagaagttctaatatgt 494  Q
    |||| || |||||||||||||||||||||||||||||||||||   ||||||||  || | |||||||||||||| ||||||    
T  29247031 caacacgccaggaatcaaactcagcacattcaattcgtccatccgcacataccaccgatctaagaaagaagttctgatatgt 29247112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 226 - 301
Target Start/End: Complemental strand, 35702195 - 35702120
Alignment:
Q  226 agacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaa 301  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| || |||||    
T  35702195 agacatttgatattggtgtggcaaaactttcaaagaaactatatatattaacaaagtaaaacattgacaccttaaa 35702120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 295
Target Start/End: Original strand, 7351396 - 7351475
Alignment:
Q  216 gggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatac 295  Q
    ||||||||| ||||||||||||||||||||||||||  || |||  || ||||| |||||||||||||||  ||||||||    
T  7351396 gggcggatccagacatttgatattggtgtggcaaaatatttaaatcaactatatttattaacaaagtaaataattgatac 7351475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 290
Target Start/End: Complemental strand, 14443119 - 14443048
Alignment:
Q  219 cggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacatt 290  Q
    |||||| ||||| ||||||||||||||||||||  | ||||| || ||||||||||||||||||||| ||||    
T  14443119 cggatccagacagttgatattggtgtggcaaaatttgcaaagtaactatatatattaacaaagtaaagcatt 14443048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 11920631 - 11920700
Alignment:
Q  216 gggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaa 285  Q
    ||||||||||||| | |||||||||||||||| |||  | |||||||| ||||||||||||||| |||||    
T  11920631 gggcggatctagagagttgatattggtgtggcgaaatttgcaaagaaactatatatattaacaacgtaaa 11920700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 302
Target Start/End: Complemental strand, 5548592 - 5548508
Alignment:
Q  220 ggatctagacatttgatattggtgtggcaaaacgttcaaagaaatt--atatatattaacaaagtaaaacattgatacattaaat 302  Q
    ||||||| ||||||||| || |||||||||||| |||||||||| |  ||||||||||| |||||| | | ||||||| ||||||    
T  5548592 ggatctaaacatttgatgttagtgtggcaaaactttcaaagaaactaaatatatattaataaagtagatcgttgatactttaaat 5548508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 16428095 - 16428148
Alignment:
Q  216 gggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatat 269  Q
    ||||||||| ||||||||||||||| ||||||||||| |||||| ||| |||||    
T  16428095 gggcggatccagacatttgatattgatgtggcaaaactttcaaataaactatat 16428148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 4e-70; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 213 - 391
Target Start/End: Complemental strand, 50386228 - 50386050
Alignment:
Q  213 catgggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaatgttatagata 312  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  50386228 catgggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaagtaaaacattgataccttaaatgctatagata 50386129  T
Q  313 aatggtttgggtggctgcgttttaccttgttgttactagtttgattgccagcaacacccttttttaatacaagtaattt 391  Q
    | |||||||||||  |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||    
T  50386128 agtggtttgggtgattgcgttttaccttgttgttactagttcgattcccagcaacacccttttttaatacaaataattt 50386050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 213 - 494
Target Start/End: Original strand, 497689 - 497971
Alignment:
Q  213 catgggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaatgttatagata 312  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||  || |||||||||||||||||||||||||| |||| ||||||| ||||||||    
T  497689 catgggcggatctagacatatgatattggtgtggcaaaactttcaaatcaactatatatattaacaaagtaaaacattaataccttaaatgctatagata 497788  T
Q  313 aatggtttgggtggctgcgttttaccttgttgttactagtttgattgccagcaacacccttttttaatacaagtaatttnnnnnnnnnncatcaaaatag 412  Q
    | ||||||||||| |||||||| |||||||||||||||||| |||| |||||||||||||||||  |||||| ||||||          |||||||||||    
T  497789 agtggtttgggtgactgcgtttaaccttgttgttactagttcgattcccagcaacaccctttttagatacaaataattt-aaaaaaaaacatcaaaatag 497887  T
Q  413 caactcgtcaggaatcaaactcagcacatt--caattcgtccatcaaaacataccattgagccaagaaagaagttctaatatgt 494  Q
    ||||  | |||||||| |||||||||||||  |||||  ||||||   ||| |||| |||||||||||||||||||| ||||||    
T  497888 caacatgccaggaatcgaactcagcacattcacaatttatccatccgcacaaaccactgagccaagaaagaagttctgatatgt 497971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 7147179 - 7147248
Alignment:
Q  216 gggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaa 285  Q
    ||||||||||||||| ||||||||||||||||||||  | |||||||| |||||||||||||||| ||||    
T  7147179 gggcggatctagacagttgatattggtgtggcaaaatttgcaaagaaactatatatattaacaaaataaa 7147248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 216 - 376
Target Start/End: Original strand, 27237346 - 27237506
Alignment:
Q  216 gggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaatgttatagataaat 315  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||  || ||||| |||||||||||||||  |||||||  ||||||  |||||  ||||    
T  27237346 gggcggatccagacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaagtaaataattgatatcttaaataatatagtgaaat 27237445  T
Q  316 ggtttgggtggctgcgttttaccttgttgttactagtttgattgccagcaacacccttttt 376  Q
    ||| | |||||  || ||||||| | ||||| |  ||| ||||  | ||||||||||||||    
T  27237446 ggtataggtggaagcattttaccattttgttgcaggttcgattctctgcaacacccttttt 27237506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 22418913 - 22418844
Alignment:
Q  216 gggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaa 285  Q
    ||||||||| ||||| ||||||||||||||||||||  | ||||| || |||||||||||||||||||||    
T  22418913 gggcggatccagacaattgatattggtgtggcaaaatttgcaaagcaactatatatattaacaaagtaaa 22418844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 43055292 - 43055361
Alignment:
Q  216 gggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaa 285  Q
    ||||||||||||| | ||||||||||||||||||||  | |||||||| |||||||||||| ||| ||||    
T  43055292 gggcggatctagagagttgatattggtgtggcaaaatttgcaaagaaactatatatattaataaattaaa 43055361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 49430482 - 49430551
Alignment:
Q  216 gggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaa 285  Q
    ||||||||||||| | |||||||||||||| |||||  |  ||||||| |||||||||||||||||||||    
T  49430482 gggcggatctagagagttgatattggtgtgacaaaatttgtaaagaaactatatatattaacaaagtaaa 49430551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 325
Target Start/End: Original strand, 3541693 - 3541804
Alignment:
Q  213 catgggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaatgttatagata 312  Q
    ||||| |||||  |||||||||||||||||||| |||||  ||||||| || |||||||||||| ||||| || |||||| |  ||||||  | |||| |    
T  3541693 catggacggatgcagacatttgatattggtgtgacaaaattttcaaagtaactatatatattaataaagtgaagcattgacaacttaaatagtctaga-a 3541791  T
Q  313 aatggtttgggtg 325  Q
    |||||||||||||    
T  3541792 aatggtttgggtg 3541804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 40154756 - 40154820
Alignment:
Q  216 gggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaa 280  Q
    ||||||| |||||| ||||||||| ||||||| |||   ||||||||| ||||||||||||||||    
T  40154756 gggcggacctagacttttgatattagtgtggctaaaatatcaaagaaactatatatattaacaaa 40154820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 494
Target Start/End: Complemental strand, 50386000 - 50385965
Alignment:
Q  459 acataccattgagccaagaaagaagttctaatatgt 494  Q
    ||||||||||||||||||||||||||||| ||||||    
T  50386000 acataccattgagccaagaaagaagttctgatatgt 50385965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 4e-64; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 215 - 391
Target Start/End: Original strand, 46912926 - 46913102
Alignment:
Q  215 tgggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaatgttatagataaa 314  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| ||||||| |||||||||     
T  46912926 tgggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaagtaaaacattgataccttaaatgctatagataag 46913025  T
Q  315 tggtttgggtggctgcgttttaccttgttgttactagtttgattgccagcaacacccttttttaatacaagtaattt 391  Q
    ||||||||||| ||| |||||||||| ||||||||||||  ||| ||||||||||||||||||||||||| ||||||    
T  46913026 tggtttgggtgactgtgttttaccttattgttactagttcaattcccagcaacacccttttttaatacaaataattt 46913102  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 216 - 325
Target Start/End: Original strand, 36616868 - 36616977
Alignment:
Q  216 gggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaatgttatagataaat 315  Q
    ||||||||||||||||||||||||||||||| ||||  |||||| ||| ||||||||||||||||||||||||||  ||| ||||||| || ||||||||    
T  36616868 gggcggatctagacatttgatattggtgtggtaaaattttcaaacaaactatatatattaacaaagtaaaacattcttaccttaaatgctacagataaat 36616967  T
Q  316 ggtttgggtg 325  Q
    ||||||||||    
T  36616968 ggtttgggtg 36616977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 214 - 322
Target Start/End: Original strand, 46357783 - 46357891
Alignment:
Q  214 atgggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaatgttatagataa 313  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| | |||||| || |||||   |||||  ||    
T  46357783 atgggcggatctagacatttgatattggtgtggcaaaactttcaaagaaactatatatattaacaaagtagaccattgacactttaaacagtatagcaaa 46357882  T
Q  314 atggtttgg 322  Q
    |||||||||    
T  46357883 atggtttgg 46357891  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 42896852 - 42896919
Alignment:
Q  216 gggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagta 283  Q
    ||||||||||||||||||||||||||||||||||||| || ||| ||| |||||||||||||||||||    
T  42896852 gggcggatctagacatttgatattggtgtggcaaaacttttaaaaaaactatatatattaacaaagta 42896919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 424 - 494
Target Start/End: Original strand, 46913331 - 46913401
Alignment:
Q  424 gaatcaaactcagcacattcaattcgtccatcaaaacataccattgagccaagaaagaagttctaatatgt 494  Q
    ||||| |||||||||||||||||||||||||||  |||||||| | |||||||||||||||||||||||||    
T  46913331 gaatcgaactcagcacattcaattcgtccatcagcacataccactaagccaagaaagaagttctaatatgt 46913401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 223 - 303
Target Start/End: Complemental strand, 18104576 - 18104496
Alignment:
Q  223 tctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaatg 303  Q
    ||||||||||||||||||||||| |||||  || ||| ||| |||||||||||| ||||||| ||||||||||||||||||    
T  18104576 tctagacatttgatattggtgtgacaaaattttgaaacaaactatatatattaataaagtaacacattgatacattaaatg 18104496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 301
Target Start/End: Complemental strand, 33081938 - 33081854
Alignment:
Q  217 ggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaa 301  Q
    |||||||| ||||||||||||||||||||||||||  ||||||  || ||||| |||||||||||||||  |||||||| |||||    
T  33081938 ggcggatccagacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaa 33081854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 220 - 283
Target Start/End: Complemental strand, 4519805 - 4519742
Alignment:
Q  220 ggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagta 283  Q
    |||||||||||||||||||||||||| |||||| | ||||| || |||||||||||||||||||    
T  4519805 ggatctagacatttgatattggtgtgacaaaacttgcaaagcaactatatatattaacaaagta 4519742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 46457683 - 46457752
Alignment:
Q  216 gggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaa 285  Q
    ||||||||| ||||| ||||||||||||||||||||  | ||||| || |||||||||||||||||||||    
T  46457683 gggcggatccagacagttgatattggtgtggcaaaatttgcaaagtaactatatatattaacaaagtaaa 46457752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 5848850 - 5848787
Alignment:
Q  218 gcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaag 281  Q
    |||||||||||| ||||||||||||||| | |||   ||||| |||||||||||||||||||||    
T  5848850 gcggatctagacttttgatattggtgtgactaaaatatcaaataaattatatatattaacaaag 5848787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 285
Target Start/End: Complemental strand, 28998376 - 28998311
Alignment:
Q  220 ggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaa 285  Q
    ||||| ||||| ||||||||||| ||||||||  | ||||| || |||||||||||||||||||||    
T  28998376 ggatccagacaattgatattggtatggcaaaatttgcaaagcaactatatatattaacaaagtaaa 28998311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 301
Target Start/End: Complemental strand, 31670668 - 31670593
Alignment:
Q  226 agacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaa 301  Q
    ||||||||||||||||||||  ||||  | ||||  || |||||||||||||||||||||| ||||| || |||||    
T  31670668 agacatttgatattggtgtgataaaatttccaaaacaactatatatattaacaaagtaaaatattgacaccttaaa 31670593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 283
Target Start/End: Original strand, 43998120 - 43998186
Alignment:
Q  217 ggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagta 283  Q
    |||||||| ||| | |||||||||||||| |||||  | ||||| || |||||||||||||||||||    
T  43998120 ggcggatccagagagttgatattggtgtgacaaaatttgcaaagtaactatatatattaacaaagta 43998186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 213 - 363
Target Start/End: Complemental strand, 918099 - 917949
Alignment:
Q  213 catgggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaatgttatagata 312  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  918099 catgggcggatctaaacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaagtaaaacattgataccttaaatgctatagata 918000  T
Q  313 aatggtttgggtggctgcgttttaccttgttgttactagtttgattgccag 363  Q
    | |||||||||||  |||||||||||||||||||||||||| |||| ||||    
T  917999 agtggtttgggtgattgcgttttaccttgttgttactagttcgattcccag 917949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 213 - 283
Target Start/End: Complemental strand, 41911867 - 41911797
Alignment:
Q  213 catgggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagta 283  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||  ||||||||||||||||||    
T  41911867 catgggcggatctagacatttgatattggtgtggcaaaactttcaaagcaacaatatatattaacaaagta 41911797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 9929380 - 9929322
Alignment:
Q  228 acatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaa 286  Q
    ||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  9929380 acatttgattttggtgtggcaaaactttcaaagaaaatatatatattaacaaagtaaaa 9929322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 211 - 323
Target Start/End: Complemental strand, 595813 - 595701
Alignment:
Q  211 ttcatgggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaatgttataga 310  Q
    |||| ||| |||||||||||||||||||| |||||||||||  |||||| ||| ||||||||||||||||||||||||||||||  ||||||| || |||    
T  595813 ttcaggggtggatctagacatttgatattagtgtggcaaaattttcaaacaaactatatatattaacaaagtaaaacattgatatcttaaatgctacaga 595714  T
Q  311 taaatggtttggg 323  Q
    |||||||||||||    
T  595713 taaatggtttggg 595701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 218 - 301
Target Start/End: Complemental strand, 13850814 - 13850731
Alignment:
Q  218 gcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaa 301  Q
    ||||||| ||||||||||||||||||||||||||  ||||||  || ||||| |||||||||||||||  |||||||| |||||    
T  13850814 gcggatccagacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaa 13850731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 6174377 - 6174446
Alignment:
Q  216 gggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaa 285  Q
    ||||||||| ||||| ||||||||||||||||||||  | ||||| || |||||||||||||||||||||    
T  6174377 gggcggatccagacagttgatattggtgtggcaaaatttgcaaagcaactatatatattaacaaagtaaa 6174446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 216 - 304
Target Start/End: Complemental strand, 843724 - 843636
Alignment:
Q  216 gggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattatatatattaacaaagtaaaacattgatacattaaatgt 304  Q
    ||||||||||| |||||||||||||||||| |||||| || |||  || |||||||||||| |||||| | |||||| || ||||||||    
T  843724 gggcggatctaaacatttgatattggtgtgacaaaacttttaaaacaactatatatattaataaagtagaccattgacactttaaatgt 843636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 16693645 - 16693593
Alignment:
Q  216 gggcggatctagacatttgatattggtgtggcaaaacgttcaaagaaattata 268  Q
    |||||||||||||||||| ||||| |||||||||||  || ||||||| ||||    
T  16693645 gggcggatctagacatttcatattagtgtggcaaaatttttaaagaaactata 16693593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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