View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2146_low_5 (Length: 443)

Name: NF2146_low_5
Description: NF2146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2146_low_5
NF2146_low_5
[»] chr6 (30 HSPs)
chr6 (1-243)||(31290446-31290693)
chr6 (314-429)||(31290903-31291018)
chr6 (320-426)||(27506714-27506818)
chr6 (318-367)||(27652767-27652816)
chr6 (318-372)||(26640274-26640326)
chr6 (318-372)||(26746240-26746292)
chr6 (157-244)||(27656883-27656973)
chr6 (352-426)||(27607011-27607083)
chr6 (72-136)||(2820373-2820437)
chr6 (53-125)||(5970098-5970170)
chr6 (53-125)||(15443692-15443764)
chr6 (52-123)||(32313403-32313474)
chr6 (52-110)||(8931591-8931649)
chr6 (53-111)||(9195744-9195802)
chr6 (53-111)||(9617445-9617503)
chr6 (53-111)||(16766708-16766766)
chr6 (320-354)||(26650811-26650845)
chr6 (320-354)||(26756779-26756813)
chr6 (320-354)||(26964052-26964086)
chr6 (65-114)||(10335378-10335427)
chr6 (53-122)||(25038061-25038130)
chr6 (53-110)||(26562701-26562758)
chr6 (69-114)||(29449689-29449734)
chr6 (71-124)||(34625732-34625785)
chr6 (63-123)||(7377978-7378038)
chr6 (59-111)||(9025490-9025542)
chr6 (63-111)||(9629394-9629442)
chr6 (53-125)||(10760832-10760903)
chr6 (63-123)||(20371110-20371170)
chr6 (53-121)||(21395298-21395365)
[»] chr4 (10 HSPs)
chr4 (322-426)||(18674656-18674756)
chr4 (322-426)||(18692737-18692837)
chr4 (322-426)||(18719259-18719359)
chr4 (52-111)||(24613690-24613749)
chr4 (53-123)||(35723374-35723445)
chr4 (75-126)||(44796974-44797025)
chr4 (98-136)||(18727855-18727893)
chr4 (50-111)||(4383379-4383439)
chr4 (57-122)||(18513235-18513300)
chr4 (63-123)||(8423718-8423778)
[»] chr1 (13 HSPs)
chr1 (6-135)||(264591-264722)
chr1 (53-111)||(44482241-44482299)
chr1 (65-125)||(14332406-14332465)
chr1 (75-119)||(23605132-23605176)
chr1 (80-123)||(17080898-17080941)
chr1 (53-123)||(5376490-5376560)
chr1 (59-121)||(6427351-6427413)
chr1 (53-111)||(25361897-25361955)
chr1 (57-111)||(34712377-34712431)
chr1 (70-116)||(43609825-43609871)
chr1 (80-125)||(21057780-21057825)
chr1 (65-109)||(40158412-40158456)
chr1 (63-123)||(41877470-41877530)
[»] scaffold0022 (1 HSPs)
scaffold0022 (59-126)||(99889-99956)
[»] chr5 (14 HSPs)
chr5 (53-111)||(22423802-22423860)
chr5 (58-116)||(4991372-4991429)
chr5 (57-126)||(38749557-38749626)
chr5 (59-102)||(16374338-16374381)
chr5 (53-123)||(3966502-3966572)
chr5 (53-123)||(18592072-18592142)
chr5 (53-111)||(21522761-21522819)
chr5 (53-111)||(21533327-21533385)
chr5 (59-121)||(43208270-43208332)
chr5 (60-121)||(36838544-36838605)
chr5 (57-110)||(41558648-41558701)
chr5 (55-123)||(6035482-6035549)
chr5 (63-111)||(8420038-8420086)
chr5 (53-85)||(37328834-37328866)
[»] chr3 (8 HSPs)
chr3 (9-114)||(45382751-45382858)
chr3 (52-123)||(16192739-16192810)
chr3 (53-121)||(8039825-8039893)
chr3 (75-126)||(19323460-19323511)
chr3 (67-122)||(28576716-28576771)
chr3 (63-125)||(35990525-35990587)
chr3 (57-122)||(3185242-3185306)
chr3 (69-117)||(27097065-27097113)
[»] chr7 (12 HSPs)
chr7 (53-111)||(6028636-6028694)
chr7 (58-111)||(7328686-7328739)
chr7 (50-111)||(7438717-7438778)
chr7 (53-141)||(24339623-24339711)
chr7 (57-120)||(31808503-31808566)
chr7 (67-114)||(43160492-43160539)
chr7 (57-111)||(17307904-17307958)
chr7 (57-122)||(16341496-16341561)
chr7 (54-123)||(32308119-32308188)
chr7 (59-111)||(12843171-12843223)
chr7 (59-111)||(27945052-27945104)
chr7 (54-122)||(38134397-38134465)
[»] chr2 (4 HSPs)
chr2 (65-111)||(44605141-44605187)
chr2 (63-125)||(31026692-31026754)
chr2 (54-122)||(40681982-40682050)
chr2 (54-122)||(44860320-44860388)
[»] chr8 (10 HSPs)
chr8 (63-122)||(12985392-12985451)
chr8 (53-111)||(22651987-22652045)
chr8 (53-111)||(29447100-29447158)
chr8 (60-114)||(31681827-31681881)
chr8 (59-124)||(31548289-31548354)
chr8 (44-111)||(9382983-9383048)
chr8 (59-122)||(13650755-13650819)
chr8 (59-122)||(13709398-13709462)
chr8 (63-111)||(13844596-13844644)
chr8 (6-46)||(31105813-31105853)
[»] scaffold0123 (1 HSPs)
scaffold0123 (54-110)||(44516-44572)


Alignment Details
Target: chr6 (Bit Score: 184; Significance: 2e-99; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 31290446 - 31290693
Alignment:
Q  1 tcccgaacacttctcattgaaggcgtgtctggtgtccaacatgtgtgtatttgacaccgacacgacaccgacatatgtaattac------attcatttat 94  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||      ||||||||||    
T  31290446 tcccaaacacttctcattgaaggcgtgtctggtgtccaacatgtgtgtatttgacaccgacatgacaccgacatatgtaattacgtatacattcatttat 31290545  T
Q  95 gttattttctcaaattactatcggtgtcgacaaatcaatgtccatgttaattt-cccgtgtctgtgcttcgtagggaggatattttcccactccattgat 193  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||| |||  |||||||||||||||||||||||||||||||||    
T  31290546 gttattttctcaaattactatcggtgtcgacgaatcaatgtcaatgttaattttcccgtgtgtgt--ttcgtagggaggatattttcccactccattgat 31290643  T
Q  194 ggatgtttgataaattataaatgaaaacattttacacttaaagcttacca 243  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31290644 ggatgtttgataaattataaatgtaaacattttacacttaaagcttacca 31290693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 314 - 429
Target Start/End: Original strand, 31290903 - 31291018
Alignment:
Q  314 gatttggcaaatggaagtggagaatttcgtttcataactcaaagttttggttttgtactgccatgtattacgttaaggttgtaatgagtggatattatac 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31290903 gatttggcaaatggaagtggagaatttcgtttcataactcaaagttttggttttgtacttccatgtattacgttaaggttgtaatgagtggatattatac 31291002  T
Q  414 atcaagaagagaattg 429  Q
    ||||||||||||||||    
T  31291003 atcaagaagagaattg 31291018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 320 - 426
Target Start/End: Complemental strand, 27506818 - 27506714
Alignment:
Q  320 gcaaatggaagtggagaatttcgtttcataactcaaagttttggttttgtactgccatgtattacgttaaggttgtaatgagtggatattatacatcaag 419  Q
    |||||||||||||  |||| |||||||||| |||||||||||||||||||||| |||   |||| ||||||||| |||||||| |  |||||||||||||    
T  27506818 gcaaatggaagtgacgaatatcgtttcatagctcaaagttttggttttgtacttccaaacattaggttaaggttataatgagtcg--attatacatcaag 27506721  T
Q  420 aagagaa 426  Q
    |||||||    
T  27506720 aagagaa 27506714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 367
Target Start/End: Complemental strand, 27652816 - 27652767
Alignment:
Q  318 tggcaaatggaagtggagaatttcgtttcataactcaaagttttggtttt 367  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27652816 tggcaaatggaagtggagaatttcgtttcataactcaaaattttggtttt 27652767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 372
Target Start/End: Original strand, 26640274 - 26640326
Alignment:
Q  318 tggcaaatggaagtggagaatttcgtttcataactcaaagttttggttttgtact 372  Q
    |||||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  26640274 tggcaaatggaaatggagaatttcgtttcataactc--agttttggttttgtact 26640326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 372
Target Start/End: Original strand, 26746240 - 26746292
Alignment:
Q  318 tggcaaatggaagtggagaatttcgtttcataactcaaagttttggttttgtact 372  Q
    |||||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  26746240 tggcaaatggaaatggagaatttcgtttcataactc--agttttggttttgtact 26746292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 27656973 - 27656883
Alignment:
Q  157 gtgcttcgtagggaggatatttt--cccactccattgatggatgtttgataaattataaatgaaaaca-ttttacacttaaagcttaccaa 244  Q
    ||||||| |||||||||||||||  ||| || |||||||||| | || |||||||||||||||||||| |||||||| |||| ||||||||    
T  27656973 gtgcttcatagggaggatattttttcccgcttcattgatggaagctttataaattataaatgaaaacatttttacacataaatcttaccaa 27656883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 426
Target Start/End: Complemental strand, 27607083 - 27607011
Alignment:
Q  352 tcaaagttttggttttgtactgccatgtattacgttaaggttgtaatgagtggatattatacatcaagaagagaa 426  Q
    |||||||||||||||| || | |||   ||||||||| |||||||||||||||  ||||||||||||||||||||    
T  27607083 tcaaagttttggttttttatttccaatcattacgttatggttgtaatgagtgg--attatacatcaagaagagaa 27607011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 2820373 - 2820437
Alignment:
Q  72 catatgtaattacattcatttatgttattttctcaaattactatcggtgtcgacaaatcaatgtc 136  Q
    ||||||| ||||||||||||||| |||||||||||||||| ||| ||| |  ||| |||||||||    
T  2820373 catatgtgattacattcatttattttattttctcaaattattattggtatttacatatcaatgtc 2820437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 5970098 - 5970170
Alignment:
Q  53 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 125  Q
    ||||||||||||||||| |||| |||||||||| | | |||||| ||||| |||||||| || | ||||||||    
T  5970098 gacaccgacacgacacccacatttgtaattacactgaattatgtgattttttcaaattattaactgtgtcgac 5970170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 15443764 - 15443692
Alignment:
Q  53 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 125  Q
    |||| |||||| ||||| |||||| |||||| ||| | ||||||||||||||||||||| ||| | |||||||    
T  15443764 gacatcgacacaacaccaacatatataattatattgaattatgttattttctcaaattattattgatgtcgac 15443692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 32313474 - 32313403
Alignment:
Q  52 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 123  Q
    |||||||||||||||||| ||| || ||||| |||| | | ||||||||||||||| ||| ||| |||||||    
T  32313474 tgacaccgacacgacacccacacatataattgcattgaatcatgttattttctcaacttattattggtgtcg 32313403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 8931591 - 8931649
Alignment:
Q  52 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatt 110  Q
    |||||||||||||||| ||||| || |||||| | | | ||||||||||||||||||||    
T  8931591 tgacaccgacacgacatcgacacatataattatactgaattatgttattttctcaaatt 8931649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 9195744 - 9195802
Alignment:
Q  53 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 111  Q
    |||||| |||||||||||||| || |||||||| | | |||||| ||||||||||||||    
T  9195744 gacacctacacgacaccgacacatataattacactaaattatgtcattttctcaaatta 9195802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 9617503 - 9617445
Alignment:
Q  53 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 111  Q
    |||||||  |||||||||||| || |||||||||| | |||||| ||||||||||||||    
T  9617503 gacaccgcgacgacaccgacacatataattacattgaattatgtgattttctcaaatta 9617445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 16766766 - 16766708
Alignment:
Q  53 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 111  Q
    |||||||||||||||||||||  |||||||||| | | |||||| ||||| ||||||||    
T  16766766 gacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaatta 16766708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 354
Target Start/End: Original strand, 26650811 - 26650845
Alignment:
Q  320 gcaaatggaagtggagaatttcgtttcataactca 354  Q
    |||||||||||||||||||||| ||||||||||||    
T  26650811 gcaaatggaagtggagaatttcctttcataactca 26650845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 354
Target Start/End: Original strand, 26756779 - 26756813
Alignment:
Q  320 gcaaatggaagtggagaatttcgtttcataactca 354  Q
    |||||||||||||||||||||| ||||||||||||    
T  26756779 gcaaatggaagtggagaatttcctttcataactca 26756813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 354
Target Start/End: Original strand, 26964052 - 26964086
Alignment:
Q  320 gcaaatggaagtggagaatttcgtttcataactca 354  Q
    |||||||||||||||||||||| ||||||||||||    
T  26964052 gcaaatggaagtggagaatttcctttcataactca 26964086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 10335378 - 10335427
Alignment:
Q  65 acaccgacatatgtaattacattcatttatgttattttctcaaattacta 114  Q
    ||||||||| || | |||||||||| |||||| |||||||||||||||||    
T  10335378 acaccgacacatctgattacattcaattatgtcattttctcaaattacta 10335427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 25038061 - 25038130
Alignment:
Q  53 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 122  Q
    |||||| |||| | |||||||| |||||||||| | | |||||| |||||||||||||| || |||||||    
T  25038061 gacaccaacacaataccgacatttgtaattacactaaattatgtaattttctcaaattattaacggtgtc 25038130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 26562758 - 26562701
Alignment:
Q  53 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatt 110  Q
    ||||||||||||||| ||||| || |||||||| | | |||||| |||||||||||||    
T  26562758 gacaccgacacgacatcgacacatataattacactgaattatgtgattttctcaaatt 26562701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 29449734 - 29449689
Alignment:
Q  69 cgacatatgtaattacattcatttatgttattttctcaaattacta 114  Q
    ||||| |||| |||||||||| |||||||||||||| |||||||||    
T  29449734 cgacacatgtgattacattcaattatgttattttctgaaattacta 29449689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 34625785 - 34625732
Alignment:
Q  71 acatatgtaattacattcatttatgttattttctcaaattactatcggtgtcga 124  Q
    |||||||| |||||||||| |||  | |||||||||||||| ||||||||||||    
T  34625785 acatatgtgattacattcaattaattcattttctcaaattattatcggtgtcga 34625732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 7378038 - 7377978
Alignment:
Q  63 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 123  Q
    ||||||||||| || |||||||||| | |||||| |||||||||||||  || ||||||||    
T  7378038 cgacaccgacacatataattacattgaattatgtgattttctcaaatttttagcggtgtcg 7377978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 9025490 - 9025542
Alignment:
Q  59 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 111  Q
    ||||||||||||||| || |||||||| | | |||||| ||||||||||||||    
T  9025490 gacacgacaccgacacatataattacactgaattatgtgattttctcaaatta 9025542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 9629442 - 9629394
Alignment:
Q  63 cgacaccgacatatgtaattacattcatttatgttattttctcaaatta 111  Q
    ||||||||||| || |||||||||| | |||||| ||||||||||||||    
T  9629442 cgacaccgacacatataattacattgaattatgtgattttctcaaatta 9629394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 10760832 - 10760903
Alignment:
Q  53 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 125  Q
    |||||| |||||||| |||||  ||| |||||||||| | |||| |||||||||||||| |||| ||||||||    
T  10760832 gacaccaacacgacatcgacacgtgtgattacattcaat-atgtcattttctcaaattattatcagtgtcgac 10760903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 20371110 - 20371170
Alignment:
Q  63 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 123  Q
    ||||||||||| || |||| ||||| | |||||| |||||||||||||| || ||||||||    
T  20371110 cgacaccgacacatataatcacattgagttatgtgattttctcaaattattagcggtgtcg 20371170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 21395298 - 21395365
Alignment:
Q  53 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 121  Q
    ||||| |||||||||||||||  |||||||||| | | ||||| ||||||||||||||| || ||||||    
T  21395298 gacactgacacgacaccgacacttgtaattacactaaattatg-tattttctcaaattattagcggtgt 21395365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 322 - 426
Target Start/End: Complemental strand, 18674756 - 18674656
Alignment:
Q  322 aaatggaagtggagaatttcgtttcataactcaaagttttggttttgtactgccatgtattacgttaaggttgtaatgagtggatattatacatcaagaa 421  Q
    |||||||||||||||||||| |||||||| |||  |||||||||||||||| ||| | |||||||||||||||  ||||||||  |||||||||| ||||    
T  18674756 aaatggaagtggagaatttcatttcataaatca--gttttggttttgtacttccaagcattacgttaaggttggcatgagtgg--attatacatccagaa 18674661  T
Q  422 gagaa 426  Q
    |||||    
T  18674660 gagaa 18674656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 322 - 426
Target Start/End: Complemental strand, 18692837 - 18692737
Alignment:
Q  322 aaatggaagtggagaatttcgtttcataactcaaagttttggttttgtactgccatgtattacgttaaggttgtaatgagtggatattatacatcaagaa 421  Q
    |||||||||||||||||||| |||||||| |||  |||||||||||||||| | | | |||||||||||||||  ||||||||  |||||||||||||||    
T  18692837 aaatggaagtggagaatttcatttcataaatca--gttttggttttgtacttctaagcattacgttaaggttggcatgagtgg--attatacatcaagaa 18692742  T
Q  422 gagaa 426  Q
    |||||    
T  18692741 gagaa 18692737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 322 - 426
Target Start/End: Complemental strand, 18719359 - 18719259
Alignment:
Q  322 aaatggaagtggagaatttcgtttcataactcaaagttttggttttgtactgccatgtattacgttaaggttgtaatgagtggatattatacatcaagaa 421  Q
    ||||||||||||||||||||||||||||| ||  ||||||||||||||||| |||   |||  ||||||||||| ||||||||  |||||||||||||||    
T  18719359 aaatggaagtggagaatttcgtttcataagtc--agttttggttttgtacttccaatgattgtgttaaggttgtcatgagtgg--attatacatcaagaa 18719264  T
Q  422 gagaa 426  Q
    |||||    
T  18719263 gagaa 18719259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 24613690 - 24613749
Alignment:
Q  52 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 111  Q
    ||||||||||| ||||||||||  |||| ||||||| | |||||| ||||||||||||||    
T  24613690 tgacaccgacatgacaccgacacttgtacttacattgaattatgtgattttctcaaatta 24613749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 35723374 - 35723445
Alignment:
Q  53 gacaccgacacgacaccgacatatgtaattacattcatttatgt-tattttctcaaattactatcggtgtcg 123  Q
    |||||||| ||||||| |||| || |||||||||| | |||||| ||||||||||||||| || ||||||||    
T  35723374 gacaccgatacgacactgacacatataattacattgaattatgtgtattttctcaaattattagcggtgtcg 35723445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 44796974 - 44797025
Alignment:
Q  75 atgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 126  Q
    ||||||||||||| | ||||||||||||||||||||| | ||||||| ||||    
T  44796974 atgtaattacattgaattatgttattttctcaaattattgtcggtgttgaca 44797025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 136
Target Start/End: Complemental strand, 18727893 - 18727855
Alignment:
Q  98 attttctcaaattactatcggtgtcgacaaatcaatgtc 136  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  18727893 attttctcaaattactattggtgttgacaaatcaatgtc 18727855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 4383439 - 4383379
Alignment:
Q  50 tttgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 111  Q
    ||||||||||||||||||| ||||| |||||||||| | | |||||| ||||| ||||||||    
T  4383439 tttgacaccgacacgacactgacatttgtaattacactgaattatgtgatttt-tcaaatta 4383379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 18513235 - 18513300
Alignment:
Q  57 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 122  Q
    ||||||| |||| |||| || | |||||||| | |||||| |||||||||||||| ||||||||||    
T  18513235 ccgacacaacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 8423718 - 8423778
Alignment:
Q  63 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 123  Q
    |||||||||||| | |||||||| | | |||||| |||||||||||||| || ||||||||    
T  8423718 cgacaccgacatttataattacactgaattatgtgattttctcaaattattagcggtgtcg 8423778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 135
Target Start/End: Complemental strand, 264722 - 264591
Alignment:
Q  6 aacacttctcattgaaggcgtgtctggtgtccaacatgtgt--gtatttgacaccgacacgacaccgacatatgtaattacattcatttatgttattttc 103  Q
    |||||||||||| || |||||||| |||| ||||||| |||  || || ||||| ||||||||||| ||| |||| |||||||| |  ||||||| ||||    
T  264722 aacacttctcatagatggcgtgtcaggtgcccaacatatgtttgtgttcgacactgacacgacaccaacacatgtgattacatttaagtatgttactttc 264623  T
Q  104 tcaaattactatcggtgtcgacaaatcaatgt 135  Q
    | |||||| ||| |||| ||||||||||||||    
T  264622 ttaaattaatattggtgacgacaaatcaatgt 264591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 44482299 - 44482241
Alignment:
Q  53 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 111  Q
    ||||||||||||||||||||| || |||||||| | | |||||| ||||||||||||||    
T  44482299 gacaccgacacgacaccgacacatataattacactgaattatgtgattttctcaaatta 44482241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 14332465 - 14332406
Alignment:
Q  65 acaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 125  Q
    |||||||||||||| |||||||| | |||||| |||||||||||||  |||||||||||||    
T  14332465 acaccgacatatgtgattacattgaattatgtcattttctcaaatt-ttatcggtgtcgac 14332406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 23605132 - 23605176
Alignment:
Q  75 atgtaattacattcatttatgttattttctcaaattactatcggt 119  Q
    |||| |||||||||| || ||||||||||||||||||||||||||    
T  23605132 atgtgattacattcaattttgttattttctcaaattactatcggt 23605176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 17080898 - 17080941
Alignment:
Q  80 attacattcatttatgttattttctcaaattactatcggtgtcg 123  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||    
T  17080898 attacattcaattatgttattttctcaaattattattggtgtcg 17080941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 5376490 - 5376560
Alignment:
Q  53 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 123  Q
    |||| ||||||||||||||||  | |||||||| | | |||||||||||||| |||||| || ||||||||    
T  5376490 gacatcgacacgacaccgacacttttaattacactgaattatgttattttcttaaattattagcggtgtcg 5376560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 6427413 - 6427351
Alignment:
Q  59 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 121  Q
    ||||||||||| ||| || |||||||||| | |||||| |||||||||||||| || ||||||    
T  6427413 gacacgacaccaacacatataattacattgaattatgtgattttctcaaattattagcggtgt 6427351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 25361955 - 25361897
Alignment:
Q  53 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 111  Q
    |||||||||||||||| |||| || |||||||| | | |||||| ||||||||||||||    
T  25361955 gacaccgacacgacactgacacatataattacactgaattatgtgattttctcaaatta 25361897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 34712377 - 34712431
Alignment:
Q  57 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 111  Q
    |||||||||||| |||| || |||||||| | | |||||||||||||||||||||    
T  34712377 ccgacacgacactgacacatataattacactaaattatgttattttctcaaatta 34712431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 43609825 - 43609871
Alignment:
Q  70 gacatatgtaattacattcatttatgttattttctcaaattactatc 116  Q
    |||| |||| |||||||||| ||||||||||||||||||||| ||||    
T  43609825 gacacatgtgattacattcaattatgttattttctcaaattattatc 43609871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 21057825 - 21057780
Alignment:
Q  80 attacattcatttatgttattttctcaaattactatcggtgtcgac 125  Q
    |||||||||| |||||||||||||| |||||| || ||||||||||    
T  21057825 attacattcaattatgttattttctaaaattattagcggtgtcgac 21057780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 40158412 - 40158456
Alignment:
Q  65 acaccgacatatgtaattacattcatttatgttattttctcaaat 109  Q
    ||||||||| |||| ||| ||||||||||||| ||||||||||||    
T  40158412 acaccgacacatgtgatttcattcatttatgtcattttctcaaat 40158456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 41877470 - 41877530
Alignment:
Q  63 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 123  Q
    |||||||||||  |||||||||| | | |||||| |||||||||||||| || ||||||||    
T  41877470 cgacaccgacacttgtaattacactaaattatgtaattttctcaaattattagcggtgtcg 41877530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 99956 - 99889
Alignment:
Q  59 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 126  Q
    ||||||||||| ||| || |||||||||| | |||||||||||||| |||||| ||||||||||||||    
T  99956 gacacgacaccaacacatataattacattgaattatgttattttctaaaattattatcggtgtcgaca 99889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 22423802 - 22423860
Alignment:
Q  53 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 111  Q
    |||||||||||||||||||||||| |||||| ||| | |||||| ||||||||||||||    
T  22423802 gacaccgacacgacaccgacatatataattatattgaattatgtgattttctcaaatta 22423860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 4991372 - 4991429
Alignment:
Q  58 cgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatc 116  Q
    |||||||||||||||| || |||||||||  |||||||| |||||||||||||||||||    
T  4991372 cgacacgacaccgacacatctaattacatg-atttatgtcattttctcaaattactatc 4991429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 38749557 - 38749626
Alignment:
Q  57 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 126  Q
    ||||||| ||||| ||| || |||||||||| | |||||| ||||| |||||||| ||||||||||||||    
T  38749557 ccgacacaacaccaacacatataattacattgaattatgtcattttttcaaattattatcggtgtcgaca 38749626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 16374338 - 16374381
Alignment:
Q  59 gacacgacaccgacatatgtaattacattcatttatgttatttt 102  Q
    ||||||||||||||| ||||||||||| | ||||||||||||||    
T  16374338 gacacgacaccgacacatgtaattacactgatttatgttatttt 16374381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 3966572 - 3966502
Alignment:
Q  53 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 123  Q
    ||||| ||||||||||||||| || |||||||| | | || ||| |||||||||||||| || ||||||||    
T  3966572 gacactgacacgacaccgacacatataattacactgaattgtgtgattttctcaaattattagcggtgtcg 3966502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 18592142 - 18592072
Alignment:
Q  53 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 123  Q
    |||||||||||||||||| || || |||||||||| | |||||| ||||||| ||| || || ||||||||    
T  18592142 gacaccgacacgacaccggcacatataattacattgaattatgtaattttcttaaaatattagcggtgtcg 18592072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 21522819 - 21522761
Alignment:
Q  53 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 111  Q
    |||||||||||||||||||||  |||||||||| | | |||||||||||| | ||||||    
T  21522819 gacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaatta 21522761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 21533385 - 21533327
Alignment:
Q  53 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 111  Q
    |||||||||||||||||||||  |||||||||| | | |||||||||||| | ||||||    
T  21533385 gacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaatta 21533327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 43208270 - 43208332
Alignment:
Q  59 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 121  Q
    ||||| |||| |||| || | |||||||| | |||||| ||||||||||||||||||||||||    
T  43208270 gacacaacacagacagatatgattacattgaattatgtcattttctcaaattactatcggtgt 43208332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 121
Target Start/End: Complemental strand, 36838605 - 36838544
Alignment:
Q  60 acacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 121  Q
    |||||||||||||| || |||||||| | | |||||| |||||||||||||| || ||||||    
T  36838605 acacgacaccgacacatataattacactaaattatgtaattttctcaaattattagcggtgt 36838544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 41558648 - 41558701
Alignment:
Q  57 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatt 110  Q
    |||||||||||| |||| || |||||||||| | |||||| |||||||||||||    
T  41558648 ccgacacgacactgacacatttaattacattgaattatgtcattttctcaaatt 41558701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 6035549 - 6035482
Alignment:
Q  55 caccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 123  Q
    ||||||||||||||||||| || |||||||| | | |||| ||| |||||||||||| || ||||||||    
T  6035549 caccgacacgacaccgacaaatataattacactgaattatatta-tttctcaaattattagcggtgtcg 6035482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 8420086 - 8420038
Alignment:
Q  63 cgacaccgacatatgtaattacattcatttatgttattttctcaaatta 111  Q
    |||||||||||  |||||||||||| | |||||||||||| ||||||||    
T  8420086 cgacaccgacacttgtaattacattgaattatgttattttttcaaatta 8420038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 37328834 - 37328866
Alignment:
Q  53 gacaccgacacgacaccgacatatgtaattaca 85  Q
    ||||||||||||||||||||| |||||||||||    
T  37328834 gacaccgacacgacaccgacacatgtaattaca 37328866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 45382858 - 45382751
Alignment:
Q  9 acttctcattgaaggcgtgtctggtgtccaacatgtgt--gtatttgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctca 106  Q
    |||||| || |||||| |||| ||||||| |||| |||  || | ||||||| ||| | ||||||||||||| ||||||||||  ||||||||||||| |    
T  45382858 acttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgacaccaacatgtcaccgacatatgtgattacattcaaatatgttattttctta 45382759  T
Q  107 aattacta 114  Q
    ||||||||    
T  45382758 aattacta 45382751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 16192739 - 16192810
Alignment:
Q  52 tgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 123  Q
    |||||||||||||||| | ||| || |||||||| | | ||||||||||||||||||||| || ||||||||    
T  16192739 tgacaccgacacgacatcaacacatataattacactgaattatgttattttctcaaattattaacggtgtcg 16192810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 8039825 - 8039893
Alignment:
Q  53 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgt 121  Q
    ||||||||||||||||||||| || |||||||| | | |||| | |||||||||||||| || ||||||    
T  8039825 gacaccgacacgacaccgacacatataattacactgaattatataattttctcaaattattagcggtgt 8039893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 19323460 - 19323511
Alignment:
Q  75 atgtaattacattcatttatgttattttctcaaattactatcggtgtcgaca 126  Q
    |||| |||| ||||| |||||| ||||||||||||||||||| |||||||||    
T  19323460 atgtgattaaattcaattatgtcattttctcaaattactatcagtgtcgaca 19323511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 28576771 - 28576716
Alignment:
Q  67 accgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 122  Q
    ||||||| ||||||||||||||| || ||| |||||||||||||| || |||||||    
T  28576771 accgacacatgtaattacattcaattttgtcattttctcaaattattaccggtgtc 28576716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 35990525 - 35990587
Alignment:
Q  63 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 125  Q
    |||||| |||| ||||  ||||||||| |||| |||||||||||||||| |||| ||||||||    
T  35990525 cgacactgacacatgtggttacattcagttattttattttctcaaattattatcagtgtcgac 35990587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 3185242 - 3185306
Alignment:
Q  57 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 122  Q
    |||||||||||| |||| ||||||||||||||| ||||| ||| |||| |||||| ||||| ||||    
T  3185242 ccgacacgacactgacacatgtaattacattcaattatg-tatcttctgaaattattatcgatgtc 3185306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 27097065 - 27097113
Alignment:
Q  69 cgacatatgtaattacattcatttatgttattttctcaaattactatcg 117  Q
    |||||||| |||||| ||| | |||||| ||||||||||||||||||||    
T  27097065 cgacatatataattaaattgaattatgtaattttctcaaattactatcg 27097113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 6028694 - 6028636
Alignment:
Q  53 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 111  Q
    ||||| |||||||||||||||| |||||||||||| | ||||||||| || ||||||||    
T  6028694 gacactgacacgacaccgacatttgtaattacattaaattatgttatattttcaaatta 6028636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 7328686 - 7328739
Alignment:
Q  58 cgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 111  Q
    |||||||||||||||| || |||||||| | | |||||||||||||||||||||    
T  7328686 cgacacgacaccgacacatataattacactaaattatgttattttctcaaatta 7328739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 7438778 - 7438717
Alignment:
Q  50 tttgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 111  Q
    ||||||||||||| ||||||||||  |||||||||||| | |||||| ||||| ||||||||    
T  7438778 tttgacaccgacatgacaccgacacttgtaattacattgaattatgtgattttttcaaatta 7438717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 24339711 - 24339623
Alignment:
Q  53 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgacaaatcaatgtccatgt 141  Q
    |||||||||||||||||||||  |||||||||| | | |||||| ||||| |||||||| || | |||||| |   |||||||||||||    
T  24339711 gacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcaatgtccatgt 24339623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 31808503 - 31808566
Alignment:
Q  57 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtg 120  Q
    ||||||||||||| ||| |||| |||||||| | || ||| |||||||||||||| ||||||||    
T  31808503 ccgacacgacaccaacacatgtgattacattgacttgtgtcattttctcaaattattatcggtg 31808566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 43160539 - 43160492
Alignment:
Q  67 accgacatatgtaattacattcatttatgttattttctcaaattacta 114  Q
    ||||||| |||| |||||||||| |||||||||||||| |||||||||    
T  43160539 accgacacatgtgattacattcaattatgttattttcttaaattacta 43160492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 17307958 - 17307904
Alignment:
Q  57 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 111  Q
    ||||||||||||| ||| || |||||||| | | |||||||||||||||||||||    
T  17307958 ccgacacgacaccaacacatataattacactgaattatgttattttctcaaatta 17307904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 16341561 - 16341496
Alignment:
Q  57 ccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 122  Q
    |||||||||||||| || || |||||||| | | |||||| |||||||||||||| |||| |||||    
T  16341561 ccgacacgacaccggcacatataattacacttaattatgtgattttctcaaattattatcagtgtc 16341496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 32308188 - 32308119
Alignment:
Q  54 acaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcg 123  Q
    ||||||||||||||| |||| ||  ||||||| | | |||||| |||||||||||||| || ||||||||    
T  32308188 acaccgacacgacactgacacatacaattacactgaattatgtgattttctcaaattattagcggtgtcg 32308119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 12843171 - 12843223
Alignment:
Q  59 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 111  Q
    |||||||||| |||| ||||||||||||| | |||||| ||||| ||||||||    
T  12843171 gacacgacactgacacatgtaattacattgaattatgtaattttatcaaatta 12843223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 27945104 - 27945052
Alignment:
Q  59 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 111  Q
    |||||||||||||||  |||||||||| | | |||||| ||||||||||||||    
T  27945104 gacacgacaccgacacttgtaattacactgaattatgtaattttctcaaatta 27945052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 38134397 - 38134465
Alignment:
Q  54 acaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 122  Q
    ||||| ||| || ||||||| || | |||||||| | |||||| |||||||||||||| ||||||||||    
T  38134397 acacccacatgagaccgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 38134465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 44605141 - 44605187
Alignment:
Q  65 acaccgacatatgtaattacattcatttatgttattttctcaaatta 111  Q
    ||||||||| ||||||||||||| | |||||||||||||||||||||    
T  44605141 acaccgacacatgtaattacattgaattatgttattttctcaaatta 44605187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 31026754 - 31026692
Alignment:
Q  63 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcgac 125  Q
    |||||||||||||| | |||||||| | |||||| ||||||| |||||| ||||||| |||||    
T  31026754 cgacaccgacatatatgattacattgaattatgtcattttcttaaattattatcggtctcgac 31026692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 40682050 - 40681982
Alignment:
Q  54 acaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 122  Q
    ||||| ||||||||  ||||  || ||||||||| | |||||| |||||||||||||| ||||||||||    
T  40682050 acaccaacacgacattgacacgtgcaattacattgaattatgtcattttctcaaattattatcggtgtc 40681982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 44860388 - 44860320
Alignment:
Q  54 acaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 122  Q
    ||||| |||||||||||||| || |||||||| | | |||||  |||||||||||||| || |||||||    
T  44860388 acaccaacacgacaccgacacatataattacactgaattatgcgattttctcaaattattagcggtgtc 44860320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 12985451 - 12985392
Alignment:
Q  63 cgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtc 122  Q
    |||||||||||||| | |||||||| | |||||| |||||||||||||| ||| ||||||    
T  12985451 cgacaccgacatatatgattacattgaattatgtgattttctcaaattattataggtgtc 12985392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 22652045 - 22651987
Alignment:
Q  53 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 111  Q
    |||||||||||||||||||||  |||||||| ||| | |||||| ||||| ||||||||    
T  22652045 gacaccgacacgacaccgacacttgtaattatattgaattatgtgattttttcaaatta 22651987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 29447100 - 29447158
Alignment:
Q  53 gacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 111  Q
    |||||||||| ||||||||||  |||| ||||||| | |||||| ||||||||||||||    
T  29447100 gacaccgacatgacaccgacacttgtagttacattgaattatgtgattttctcaaatta 29447158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 31681827 - 31681881
Alignment:
Q  60 acacgacaccgacatatgtaattacattcatttatgttattttctcaaattacta 114  Q
    |||||||||||||| |||| ||| |||||| |||||| ||||||| |||||||||    
T  31681827 acacgacaccgacacatgtgatttcattcaattatgtcattttcttaaattacta 31681881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 31548289 - 31548354
Alignment:
Q  59 gacacgacaccgacatatgtaattacattcatttatgttattttctcaaattactatcggtgtcga 124  Q
    |||| |||||||||| |||| |||||||| | |||||| ||||| |||||| | ||||||||||||    
T  31548289 gacatgacaccgacacatgtgattacattgaattatgtcattttatcaaataattatcggtgtcga 31548354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 9383048 - 9382983
Alignment:
Q  44 tgtgtatttgacaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatta 111  Q
    ||||| ||||||||||||||||||| |||| |  |||||||||| | ||||||  |||||||||||||    
T  9383048 tgtgtgtttgacaccgacacgacacagacaca--taattacattgaattatgtagttttctcaaatta 9382983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 13650819 - 13650755
Alignment:
Q  59 gacacgacaccgacatatgtaattacattcatttatgt-tattttctcaaattactatcggtgtc 122  Q
    |||||||||||| || ||||| ||||||||||| |  | ||||||||||| ||||||||||||||    
T  13650819 gacacgacaccgtcacatgtagttacattcattaacttctattttctcaacttactatcggtgtc 13650755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 13709462 - 13709398
Alignment:
Q  59 gacacgacaccgacatatgtaattacattcatttatgt-tattttctcaaattactatcggtgtc 122  Q
    |||||||||||| || ||||| ||||||||||| |  | ||||||||||| ||||||||||||||    
T  13709462 gacacgacaccgtcacatgtagttacattcattaacttctattttctcaacttactatcggtgtc 13709398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 13844596 - 13844644
Alignment:
Q  63 cgacaccgacatatgtaattacattcatttatgttattttctcaaatta 111  Q
    ||||||||||| || |||||||| ||| |||||| ||||||||||||||    
T  13844596 cgacaccgacacatataattacactcaattatgtgattttctcaaatta 13844644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 31105813 - 31105853
Alignment:
Q  6 aacacttctcattgaaggcgtgtctggtgtccaacatgtgt 46  Q
    |||||||| ||||||||  ||||||||||||||||||||||    
T  31105813 aacacttcacattgaagatgtgtctggtgtccaacatgtgt 31105853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 44516 - 44572
Alignment:
Q  54 acaccgacacgacaccgacatatgtaattacattcatttatgttattttctcaaatt 110  Q
    |||||||||||| ||||||| || |||||||| | | |||||| |||||||||||||    
T  44516 acaccgacacgataccgacacatataattacactgaattatgtgattttctcaaatt 44572  T

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