View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2146_low_7 (Length: 376)
Name: NF2146_low_7
Description: NF2146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2146_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 31 - 360
Target Start/End: Original strand, 34673957 - 34674286
Alignment:
| Q |
31 |
tattcaaccagaggtggacacatacactattcttattgaaggattgtgcaaaagcttttgatggttattgtcattttatctatctacnnnnnnnntatct |
130 |
Q |
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| T |
34673957 |
tattccaccagatgtggacacatacattattcttattgaaggattgtgcaaaagcttttaatggttattgtcattttatctatcta--aaaaaaatatct |
34674054 |
T |
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| Q |
131 |
annnnnnn-gtctaccaatttgtgagtatctcttacggtaggccttcaaactttggttctcttcatcatagaagtctagtccttccaatatccgttcgtc |
229 |
Q |
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| T |
34674055 |
aatttttttgtctaccaatttgtgagtatctcttacggtaggccttcaaactttggttctcttcatcatagaagtctagtccttccaatatccgttcgtc |
34674154 |
T |
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| Q |
230 |
aatttt-tacttatttggtacaacttatttatattttatttcatagggaataatatatgataaatttattggctcaaccaagtgtttattttttaatacc |
328 |
Q |
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| T |
34674155 |
aattttttacttatttggtacaacttatttatattttatttcatagggaataatatatgataaatttattggctcaaccaggtgtttattttttaatacc |
34674254 |
T |
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| Q |
329 |
acctgcaaggtcatactcatctataagaaagt |
360 |
Q |
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| T |
34674255 |
acctgcaaggtcatactcatctataagaaagt |
34674286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 29889852 - 29889903
Alignment:
| Q |
31 |
tattcaaccagaggtggacacatacactattcttattgaaggattgtgcaaa |
82 |
Q |
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| T |
29889852 |
tattcaaccaaatgtgtaaacatacactattcttattgatggattgtgcaaa |
29889903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 29348474 - 29348428
Alignment:
| Q |
32 |
attcaaccagaggtggacacatacactattcttattgaaggattgtg |
78 |
Q |
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| T |
29348474 |
attcaaccagatatgtacacatacactattcttattgatggattgtg |
29348428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 24271823 - 24271790
Alignment:
| Q |
49 |
cacatacactattcttattgaaggattgtgcaaa |
82 |
Q |
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| T |
24271823 |
cacatacactattcttattgatggattgtgcaaa |
24271790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 25451240 - 25451292
Alignment:
| Q |
31 |
tattcaaccagaggtggacacatacactattcttattgaaggattgtgcaaaa |
83 |
Q |
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|||||||||| | ||| |||||||||||||| ||||||| |||||||| |||| |
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| T |
25451240 |
tattcaaccaaatgtgtacacatacactatttttattgacggattgtgtaaaa |
25451292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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