View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21470_low_3 (Length: 446)
Name: NF21470_low_3
Description: NF21470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21470_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 304 - 431
Target Start/End: Original strand, 28896822 - 28896949
Alignment:
| Q |
304 |
tttaggggatagtaaagagaatttaactatcacctatagagataaaaaagttattatcctgcatatgccatcaaaatatatattctcggtttgaacatta |
403 |
Q |
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| T |
28896822 |
tttaggggataataaagagaatttaactatcacctatagagataaaaaagttattctcctgcatatgccatcaaaatatatattctcggtttgaacatta |
28896921 |
T |
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| Q |
404 |
ttttcttggaatcaaatccctctcaatt |
431 |
Q |
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| T |
28896922 |
ttttcttggaatcaaatctctctcaatt |
28896949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 28896768 - 28896817
Alignment:
| Q |
11 |
gaacctgtgagtaaagcctgatgctattggacaacagttgcatctttaag |
60 |
Q |
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| T |
28896768 |
gaacctgggagtaaagcctgatgctattggacaagagttgcatctttaag |
28896817 |
T |
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