View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21471_high_10 (Length: 222)
Name: NF21471_high_10
Description: NF21471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21471_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 164; Significance: 8e-88; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 3 - 182
Target Start/End: Original strand, 40277458 - 40277637
Alignment:
| Q |
3 |
cttgtgatctttgatgatgttcgagaaaaattcaacccagaggatgtaggtattccactgaaaagtaatcgatgcaaggtccttttgatcacattttacc |
102 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40277458 |
cttgtgatctttgatgatgttcgggaaaaattcaacccagaggatgtaggcattccactgaaaagtaatcgatgcaaggtccttttgatcacatttttcc |
40277557 |
T |
|
| Q |
103 |
aacaagactgtgacttgatgtactgtcaaaggaagattcaacttgatcccttatctacagaggaaacttggactttgttc |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
40277558 |
aacaagactgtgacttgatgtactgtcaaaggaagattcaacttaatcccttatctacagaggaaacttggactttgttc |
40277637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 182
Target Start/End: Complemental strand, 40598118 - 40597942
Alignment:
| Q |
6 |
gtgatctttgatgatgttcgagaaaaattcaacccagaggatgtaggtattccactgaaaagtaatcgatgcaaggtccttttgatcacattttaccaac |
105 |
Q |
| |
|
||||| || ||||||||||| | |||||| | ||||| |||||||| ||||| || ||||||||||||||| ||||||||| | || || ||||| |
|
|
| T |
40598118 |
gtgattttcgatgatgttcgggtaaaatttgatccagaagatgtaggcattccttgtaatagtaatcgatgcaagatccttttgaccgcacttgcccaac |
40598019 |
T |
|
| Q |
106 |
aagactgtgacttgatgtactgtcaaaggaagattcaacttgatcccttatctacagaggaaacttggactttgttc |
182 |
Q |
| |
|
|||| ||||| |||||| ||| ||||||| |||||||||| ||||||||||| ||||||| |||||||||||||| |
|
|
| T |
40598018 |
aagattgtgaattgatgcactccaaaaggaatattcaacttggtcccttatctatagaggaatcttggactttgttc |
40597942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 3 - 181
Target Start/End: Original strand, 40386857 - 40387035
Alignment:
| Q |
3 |
cttgtgatctttgatgatgttcgagaaaaattcaacccagaggatgtaggtattccactgaaaagtaatcgatgcaaggtccttttgatcacattttacc |
102 |
Q |
| |
|
||||| ||||||||||||||||| | |||||| ||| | ||||||||| ||||| || ||||||||||||||||| ||||||| | || | || |
|
|
| T |
40386857 |
cttgttatctttgatgatgttcgggcaaaatttgacctacgggatgtaggaattccttctaatagtaatcgatgcaaggtacttttgaccgcacgtcgcc |
40386956 |
T |
|
| Q |
103 |
aacaagactgtgacttgatgtactgtcaaaggaagattcaacttgatcccttatctacagaggaaacttggactttgtt |
181 |
Q |
| |
|
|| || | |||||||| | ||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||| |
|
|
| T |
40386957 |
aaaaatattgtgacttagtttactgtcaaaggaagattctacttgatcccttatctacagaggaagcttcgacgttgtt |
40387035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 66 - 182
Target Start/End: Original strand, 40326080 - 40326196
Alignment:
| Q |
66 |
agtaatcgatgcaaggtccttttgatcacattttaccaacaagactgtgacttgatgtactgtcaaaggaagattcaacttgatcccttatctacagagg |
165 |
Q |
| |
|
||||||||||||||||||||||||| ||||| | ||||||||| ||||| || || | ||||||||| ||||||||||| ||| ||||| ||||||| |
|
|
| T |
40326080 |
agtaatcgatgcaaggtccttttgaccacatgtcgccaacaagattgtgagtttatacattgtcaaagggagattcaacttagtcctttatccacagagg |
40326179 |
T |
|
| Q |
166 |
aaacttggactttgttc |
182 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
40326180 |
aagcttggactttgttc |
40326196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 181
Target Start/End: Original strand, 40333579 - 40333757
Alignment:
| Q |
3 |
cttgtgatctttgatgatgttcgagaaaaattcaacccagaggatgtaggtattccactgaaaagtaatcgatgcaaggtccttttgatcacattttacc |
102 |
Q |
| |
|
||||||||||||||||||||||| | |||||| ||| | ||||||||| ||||| || ||||||| ||||||||| ||||||| | || | || |
|
|
| T |
40333579 |
cttgtgatctttgatgatgttcgggcaaaatttgacctacgggatgtaggaattccttgtaatagtaatctatgcaaggttcttttgaccgcacgtcgcc |
40333678 |
T |
|
| Q |
103 |
aacaagactgtgacttgatgtactgtcaaaggaagattcaacttgatcccttatctacagaggaaacttggactttgtt |
181 |
Q |
| |
|
|| || | || ||||| ||| ||||||||||| |||||| ||||||||| ||||||||||||||| ||| ||||||||| |
|
|
| T |
40333679 |
aaaaatattgcgacttaatgcactgtcaaagggagattctacttgatccattatctacagaggaagcttcgactttgtt |
40333757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 181
Target Start/End: Original strand, 40376612 - 40376790
Alignment:
| Q |
3 |
cttgtgatctttgatgatgttcgagaaaaattcaacccagaggatgtaggtattccactgaaaagtaatcgatgcaaggtccttttgatcacattttacc |
102 |
Q |
| |
|
||||||||||||||||||||||| | || ||| ||| | ||||||||| ||||| | ||||||| ||||||||| ||||||| | || | || |
|
|
| T |
40376612 |
cttgtgatctttgatgatgttcgggcaagatttgacctacgggatgtaggaattccttgtactagtaatctatgcaaggttcttttgaccgcacgtagcc |
40376711 |
T |
|
| Q |
103 |
aacaagactgtgacttgatgtactgtcaaaggaagattcaacttgatcccttatctacagaggaaacttggactttgtt |
181 |
Q |
| |
|
|| || | |||||||| ||| | ||||||||| ||||| ||||||| | ||||||||||||||| ||| ||||||||| |
|
|
| T |
40376712 |
aaaaatattgtgacttaatgcattgtcaaagggagattttacttgattcattatctacagaggaagcttcgactttgtt |
40376790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University