View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21471_high_11 (Length: 216)

Name: NF21471_high_11
Description: NF21471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21471_high_11
NF21471_high_11
[»] chr1 (19 HSPs)
chr1 (25-203)||(41440500-41440678)
chr1 (127-189)||(27474376-27474438)
chr1 (137-190)||(45402191-45402244)
chr1 (126-190)||(4349733-4349797)
chr1 (129-193)||(15511150-15511214)
chr1 (127-191)||(42304207-42304271)
chr1 (143-190)||(4430015-4430062)
chr1 (134-193)||(27136658-27136717)
chr1 (127-190)||(46247953-46248016)
chr1 (127-193)||(6358214-6358280)
chr1 (137-191)||(18741967-18742021)
chr1 (127-193)||(19974074-19974140)
chr1 (125-190)||(10378733-10378798)
chr1 (122-190)||(23796560-23796628)
chr1 (118-190)||(31382205-31382277)
chr1 (137-193)||(31442399-31442455)
chr1 (143-187)||(33594147-33594191)
chr1 (127-187)||(43768237-43768297)
chr1 (127-191)||(50606497-50606561)
[»] scaffold0049 (1 HSPs)
scaffold0049 (124-191)||(59050-59117)
[»] chr7 (6 HSPs)
chr7 (143-191)||(3469191-3469239)
chr7 (128-187)||(18747562-18747621)
chr7 (143-190)||(33871926-33871973)
chr7 (118-190)||(7879710-7879782)
chr7 (126-190)||(23419673-23419737)
chr7 (143-187)||(45018939-45018983)
[»] chr5 (8 HSPs)
chr5 (127-187)||(3771414-3771474)
chr5 (125-193)||(12575658-12575726)
chr5 (127-189)||(25622533-25622595)
chr5 (127-190)||(16957386-16957449)
chr5 (127-189)||(38879656-38879718)
chr5 (137-193)||(208937-208993)
chr5 (126-190)||(24323705-24323768)
chr5 (126-190)||(24360329-24360392)
[»] chr8 (3 HSPs)
chr8 (127-190)||(35261751-35261814)
chr8 (137-190)||(44530221-44530274)
chr8 (127-190)||(35107311-35107374)
[»] chr4 (15 HSPs)
chr4 (127-178)||(6966175-6966226)
chr4 (122-193)||(20639653-20639724)
chr4 (127-193)||(36816384-36816450)
chr4 (125-191)||(44363128-44363194)
chr4 (127-190)||(10277757-10277820)
chr4 (130-193)||(36589813-36589876)
chr4 (126-189)||(38755907-38755970)
chr4 (122-189)||(50555651-50555718)
chr4 (127-190)||(51865038-51865101)
chr4 (137-191)||(16494290-16494344)
chr4 (126-187)||(30690175-30690236)
chr4 (120-189)||(33836480-33836549)
chr4 (126-190)||(11394924-11394988)
chr4 (126-190)||(11404651-11404715)
chr4 (135-187)||(19027923-19027975)
[»] chr2 (15 HSPs)
chr2 (143-190)||(99281-99328)
chr2 (144-191)||(19185760-19185807)
chr2 (127-190)||(44643595-44643658)
chr2 (123-189)||(14530393-14530459)
chr2 (127-191)||(10543771-10543835)
chr2 (122-190)||(10546235-10546303)
chr2 (64-96)||(33368890-33368922)
chr2 (127-190)||(9671251-9671314)
chr2 (127-178)||(11514519-11514570)
chr2 (144-191)||(31158456-31158503)
chr2 (147-190)||(32781308-32781351)
chr2 (120-190)||(17380231-17380300)
chr2 (147-188)||(33795359-33795400)
chr2 (122-190)||(36871564-36871631)
chr2 (128-188)||(40579750-40579810)
[»] chr6 (7 HSPs)
chr6 (127-189)||(6808468-6808530)
chr6 (127-180)||(13628256-13628309)
chr6 (137-190)||(18277203-18277256)
chr6 (127-191)||(12885984-12886048)
chr6 (127-190)||(13267797-13267860)
chr6 (127-189)||(29355855-29355917)
chr6 (144-193)||(14390875-14390924)
[»] chr3 (8 HSPs)
chr3 (127-193)||(53996565-53996631)
chr3 (131-187)||(19731099-19731155)
chr3 (127-190)||(40272812-40272875)
chr3 (127-190)||(54484785-54484848)
chr3 (127-189)||(13628790-13628852)
chr3 (127-180)||(10484616-10484669)
chr3 (126-191)||(10795422-10795487)
chr3 (127-191)||(516505-516569)
[»] scaffold0057 (2 HSPs)
scaffold0057 (146-199)||(46726-46779)
scaffold0057 (121-190)||(46903-46972)


Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 25 - 203
Target Start/End: Original strand, 41440500 - 41440678
Alignment:
Q  25 tgtttgatagtggtttcttttatttatgtatttattctgttttgctgtatgtgaagttttggatttgagattcttctattataccaaataaataaaataa 124  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  41440500 tgtttgatagtgatttcttttatttatgtatttattctgttttgctgtatgtgaagttttggatttgagattcttctcttataccgaataaataaaataa 41440599  T
Q  125 ataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattttggcatattcttc 203  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41440600 aaaaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattttggcatattcttc 41440678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 27474438 - 27474376
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatt 189  Q
    |||||||| |||||| ||||||||||||||||||| ||| |||  ||||||||| ||||||||    
T  27474438 aaagggcaatccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 27474376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 45402244 - 45402191
Alignment:
Q  137 ccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    ||||| ||||||||||||||||||| ||| |||| ||||||||| |||||||||    
T  45402244 ccggtgcactaaagctcccgcatacgcagggtctgggaaggggtcccaccattt 45402191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 4349797 - 4349733
Alignment:
Q  126 taaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    |||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| |||||||||    
T  4349797 taaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 4349733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 15511150 - 15511214
Alignment:
Q  129 agggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattttgg 193  Q
    ||||||| ||||| ||||||||||| | ||||| ||| ||| |||||||||| ||||||||||||    
T  15511150 agggcagcccggtgcactaaagctcacacatacgcagggtccaggaaggggtaccaccattttgg 15511214  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 42304207 - 42304271
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatttt 191  Q
    |||||||| |||||| ||||||||||||| ||||| ||| |||  ||||||||| ||||||||||    
T  42304207 aaagggcaatccggtgcactaaagctcccacatacgcagggtccgggaaggggtcccaccatttt 42304271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 4430015 - 4430062
Alignment:
Q  143 cactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    |||||||||||||||||||||||  || || |||||||||||||||||    
T  4430015 cactaaagctcccgcatacacaggatccagaaaggggttccaccattt 4430062  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 27136658 - 27136717
Alignment:
Q  134 agtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattttgg 193  Q
    |||||||| ||||  ||||||||||||||||   ||||||||||||| ||||||||||||    
T  27136658 agtccggtgcactggagctcccgcatacacatgatctaggaaggggtcccaccattttgg 27136717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 46247953 - 46248016
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| |||||||||    
T  46247953 aaagggcaacccggtacactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 46248016  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 6358280 - 6358214
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattttgg 193  Q
    ||||||||| || | ||||||||| ||| |||||| ||| |||| ||||||||| ||||||||||||    
T  6358280 aaagggcagccccgatcactaaagatcctgcatacgcagggtctgggaaggggtcccaccattttgg 6358214  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 18741967 - 18742021
Alignment:
Q  137 ccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatttt 191  Q
    ||||| ||||||||||| ||||||| ||| |||| ||||||||| ||||||||||    
T  18741967 ccggtgcactaaagctctcgcatacgcagggtctgggaaggggtcccaccatttt 18742021  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 193
Target Start/End: Original strand, 19974074 - 19974140
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattttgg 193  Q
    ||||||||| || || |||||||||||||||||||| ||||||  |||| |||| ||| ||||||||    
T  19974074 aaagggcagccccgtgcactaaagctcccgcatacatagagtccgggaatgggtcccatcattttgg 19974140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 10378733 - 10378798
Alignment:
Q  125 ataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    |||| |||||| ||||| ||||||||||||||||||  ||| ||| | |||||||| |||||||||    
T  10378733 ataatgggcagcccggtgcactaaagctcccgcatatgcagggtccaagaaggggtcccaccattt 10378798  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 23796628 - 23796560
Alignment:
Q  122 taaataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    |||| ||||||||| ||||| |||||||||||| |||||  ||| |||| |||||||||  ||||||||    
T  23796628 taaaaaaagggcagcccggtgcactaaagctccagcatatgcagggtctgggaaggggtctcaccattt 23796560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 31382205 - 31382277
Alignment:
Q  118 aaaataaataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    |||| ||| ||||||||  ||||| || |||||||||||||||  ||| ||| |||||||||| |||||||||    
T  31382205 aaaaaaaaaaaagggcaacccggtacagtaaagctcccgcatatgcagggtccaggaaggggtcccaccattt 31382277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 31442399 - 31442455
Alignment:
Q  137 ccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattttgg 193  Q
    ||||| ||| ||||||||| ||||||||| |||  ||||||||| ||||||||||||    
T  31442399 ccggtgcaccaaagctcccacatacacagtgtccgggaaggggtcccaccattttgg 31442455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 33594147 - 33594191
Alignment:
Q  143 cactaaagctcccgcatacacagagtctaggaaggggttccacca 187  Q
    ||||||||||||||||||| ||| |||| ||||||||| ||||||    
T  33594147 cactaaagctcccgcatacgcagggtctgggaaggggtcccacca 33594191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 43768297 - 43768237
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccacca 187  Q
    ||||||||| ||||| || ||||||||||| |||| ||| |||| ||||||||| ||||||    
T  43768297 aaagggcagcccggtgcattaaagctcccgtatacgcagggtctgggaaggggtcccacca 43768237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 50606561 - 50606497
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatttt 191  Q
    ||||||||  ||||| ||||||||||||||||||  ||| |||  ||||||||| ||||||||||    
T  50606561 aaagggcaacccggtgcactaaagctcccgcatatgcagggtccgggaaggggtcccaccatttt 50606497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 59117 - 59050
Alignment:
Q  124 aataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatttt 191  Q
    |||||||||||  ||| | ||||||||||||||||||| |||||||| ||||||||| ||||||||||    
T  59117 aataaagggcaacccgatgcactaaagctcccgcatacgcagagtctgggaaggggtcccaccatttt 59050  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 3469191 - 3469239
Alignment:
Q  143 cactaaagctcccgcatacacagagtctaggaaggggttccaccatttt 191  Q
    ||||||||||||||||||||||| |||||||||||||| || |||||||    
T  3469191 cactaaagctcccgcatacacagggtctaggaaggggtcccgccatttt 3469239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 18747621 - 18747562
Alignment:
Q  128 aagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccacca 187  Q
    |||||||| ||||| ||||||||||||||||||| ||| ||  |||||||||| ||||||    
T  18747621 aagggcagcccggtgcactaaagctcccgcatacgcagggttcaggaaggggtcccacca 18747562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 33871926 - 33871973
Alignment:
Q  143 cactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    ||||||||||| ||||||||||| |||| ||||||||| |||||||||    
T  33871926 cactaaagctctcgcatacacagggtctgggaaggggtcccaccattt 33871973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 7879782 - 7879710
Alignment:
Q  118 aaaataaataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    |||| ||| ||||||||  ||||| |||| |||||||||||||| ||| |||  ||||||||| |||||||||    
T  7879782 aaaaaaaaaaaagggcaacccggtgcactgaagctcccgcatacgcagggtccgggaaggggtcccaccattt 7879710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 23419673 - 23419737
Alignment:
Q  126 taaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    |||||||||| ||| | ||||||||| |||||| || ||  |||||||||||||| |||||||||    
T  23419673 taaagggcagcccgatgcactaaagcccccgcacacgcaaggtctaggaaggggtcccaccattt 23419737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 45018939 - 45018983
Alignment:
Q  143 cactaaagctcccgcatacacagagtctaggaaggggttccacca 187  Q
    ||||||||||||||||||| ||| |||  ||||||||||||||||    
T  45018939 cactaaagctcccgcatacgcagggtccgggaaggggttccacca 45018983  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 3771474 - 3771414
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccacca 187  Q
    ||||||||| ||||| ||||||||||||| |||||||||||||  ||||||||| ||||||    
T  3771474 aaagggcagcccggtgcactaaagctcccacatacacagagtccgggaaggggtcccacca 3771414  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 12575658 - 12575726
Alignment:
Q  125 ataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattttgg 193  Q
    ||||||||||| ||||| ||| |||||||| |||||| ||| ||| |||||||||| ||||||||||||    
T  12575658 ataaagggcagcccggtgcaccaaagctcctgcatacgcagggtccaggaaggggtcccaccattttgg 12575726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 25622595 - 25622533
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatt 189  Q
    |||||||| |||||| ||||||||||||||||||| ||| |||  ||||||||| ||||||||    
T  25622595 aaagggcaatccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 25622533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 16957449 - 16957386
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| |||||||||    
T  16957449 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 16957386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 38879718 - 38879656
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatt 189  Q
    ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| ||||||||    
T  38879718 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 38879656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 208937 - 208993
Alignment:
Q  137 ccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattttgg 193  Q
    ||||| |||||||||||  |||||| ||| ||| |||||||||| ||||||||||||    
T  208937 ccggtgcactaaagctcttgcatacccagggtccaggaaggggtcccaccattttgg 208993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 24323705 - 24323768
Alignment:
Q  126 taaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    ||||||||||||| || ||| |||||||||||||| |||| |||| ||||||||| |||| ||||    
T  24323705 taaagggcagtccagtgcac-aaagctcccgcatatacagggtctgggaaggggtcccactattt 24323768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 24360329 - 24360392
Alignment:
Q  126 taaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    ||||||||||||| || ||| |||||||||||||| |||| |||| ||||||||| |||| ||||    
T  24360329 taaagggcagtccagtgcac-aaagctcccgcatatacagggtctgggaaggggtcccactattt 24360392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 35261814 - 35261751
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    ||||||||  ||||| ||||||||||||||||||| ||| ||| |||||||||| |||||||||    
T  35261814 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccaggaaggggtcccaccattt 35261751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 44530274 - 44530221
Alignment:
Q  137 ccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    ||||| ||||||||||||||||||| ||| ||| |||||||||| |||||||||    
T  44530274 ccggtgcactaaagctcccgcatacgcagggtccaggaaggggtcccaccattt 44530221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 35107311 - 35107374
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    ||||||||  ||||| |||||||||| |||||||||||| |||  ||||||||| |||||||||    
T  35107311 aaagggcaacccggtgcactaaagcttccgcatacacagcgtccgggaaggggtcccaccattt 35107374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 6966226 - 6966175
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggg 178  Q
    |||||||||||||||||||||| ||||| ||||||||||||||  |||||||    
T  6966226 aaagggcagtccggttcactaatgctcctgcatacacagagtccgggaaggg 6966175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 193
Target Start/End: Original strand, 20639653 - 20639724
Alignment:
Q  122 taaataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattttgg 193  Q
    |||| ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| ||||||||||||    
T  20639653 taaaaaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattttgg 20639724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 193
Target Start/End: Original strand, 36816384 - 36816450
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattttgg 193  Q
    ||||||||  ||||| ||||||||||||||||||||||| ||| ||||||| || ||||| ||||||    
T  36816384 aaagggcaacccggtacactaaagctcccgcatacacagggtccaggaaggagtcccacctttttgg 36816450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 191
Target Start/End: Original strand, 44363128 - 44363194
Alignment:
Q  125 ataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatttt 191  Q
    ||||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| ||||||||||    
T  44363128 ataaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatttt 44363194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 10277757 - 10277820
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    |||||||| |||||||||||| | ||||||||||  ||| |||| |||||||||| ||||||||    
T  10277757 aaagggcaatccggttcactagaactcccgcatatgcagggtctgggaaggggtttcaccattt 10277820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 36589876 - 36589813
Alignment:
Q  130 gggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattttgg 193  Q
    |||||| ||||| ||| |||||||||||||||| || ||  |||||||||| ||||||||||||    
T  36589876 gggcagcccggtgcaccaaagctcccgcatacatagggttcaggaaggggtcccaccattttgg 36589813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 38755907 - 38755970
Alignment:
Q  126 taaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatt 189  Q
    |||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| ||||||||    
T  38755907 taaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 38755970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 50555651 - 50555718
Alignment:
Q  122 taaataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatt 189  Q
    |||| ||||||||| ||||| ||||||| |||| |||||| ||| |||  ||||||||||||||||||    
T  50555651 taaaaaaagggcagcccggtgcactaaaactcctgcatacgcagggtccgggaaggggttccaccatt 50555718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 51865038 - 51865101
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    ||||||||||||||| || |||||||||||||||| ||| |||  ||||||||  |||||||||    
T  51865038 aaagggcagtccggtgcaataaagctcccgcatacgcagggtccgggaaggggccccaccattt 51865101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 16494344 - 16494290
Alignment:
Q  137 ccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatttt 191  Q
    ||||| |||||||||| |||||||||||| |||| |||| |||| ||||||||||    
T  16494344 ccggtacactaaagcttccgcatacacagggtctgggaaagggtcccaccatttt 16494290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 187
Target Start/End: Original strand, 30690175 - 30690236
Alignment:
Q  126 taaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccacca 187  Q
    |||||||||| | ||| ||||||||||||||||||| ||| |||  ||||||||| ||||||    
T  30690175 taaagggcagcctggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccacca 30690236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 33836480 - 33836549
Alignment:
Q  120 aataaataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatt 189  Q
    |||||| ||||||||  ||| | ||||||||||||||||||| ||| |||  ||||||||| ||||||||    
T  33836480 aataaaaaaagggcaacccgttgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 33836549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 11394988 - 11394924
Alignment:
Q  126 taaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    |||||||||  ||||| ||||||||||||||||||| ||| |||  | ||||||| |||||||||    
T  11394988 taaagggcaacccggtgcactaaagctcccgcatacgcagggtccggaaaggggtcccaccattt 11394924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 11404715 - 11404651
Alignment:
Q  126 taaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    |||||||||  ||||| ||||||||||||||||||| ||| |||  | ||||||| |||||||||    
T  11404715 taaagggcaacccggtgcactaaagctcccgcatacgcagggtccggaaaggggtcccaccattt 11404651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 19027975 - 19027923
Alignment:
Q  135 gtccggttcactaaagctcccgcatacacagagtctaggaaggggttccacca 187  Q
    ||||||| ||||||||||||| ||||| |||||||| | ||||||| ||||||    
T  19027975 gtccggtgcactaaagctcccacatacgcagagtctggaaaggggtcccacca 19027923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 99281 - 99328
Alignment:
Q  143 cactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||    
T  99281 cactaaagctcccgcatacacagggtctgagaaggggttccaccattt 99328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 191
Target Start/End: Original strand, 19185760 - 19185807
Alignment:
Q  144 actaaagctcccgcatacacagagtctaggaaggggttccaccatttt 191  Q
    |||||||||||||||||| ||| ||| |||||||||||||||||||||    
T  19185760 actaaagctcccgcatacgcagggtccaggaaggggttccaccatttt 19185807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 44643658 - 44643595
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    ||||||||| ||||| |||||| |||||||||||| ||| |||| ||||||||| |||||||||    
T  44643658 aaagggcagcccggtgcactaaggctcccgcatacgcagggtctgggaaggggtcccaccattt 44643595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 14530459 - 14530393
Alignment:
Q  123 aaataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatt 189  Q
    ||||||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| ||||||||    
T  14530459 aaataaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 14530393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 10543835 - 10543771
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatttt 191  Q
    ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| ||||||||||    
T  10543835 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatttt 10543771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 10546303 - 10546235
Alignment:
Q  122 taaataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    |||| ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| |||||||||    
T  10546303 taaaaaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 10546235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 96
Target Start/End: Original strand, 33368890 - 33368922
Alignment:
Q  64 ttttgctgtatgtgaagttttggatttgagatt 96  Q
    |||||||||||||||||||||||||||||||||    
T  33368890 ttttgctgtatgtgaagttttggatttgagatt 33368922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 9671314 - 9671251
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| |||||||||    
T  9671314 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 9671251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 11514570 - 11514519
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggg 178  Q
    |||||||| |||||| ||||||||||||||||||| ||| |||| |||||||    
T  11514570 aaagggcaatccggtgcactaaagctcccgcatacgcagggtctgggaaggg 11514519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 191
Target Start/End: Original strand, 31158456 - 31158503
Alignment:
Q  144 actaaagctcccgcatacacagagtctaggaaggggttccaccatttt 191  Q
    |||||||||||||||||| ||| |||| ||||||||| ||||||||||    
T  31158456 actaaagctcccgcatacgcagggtctgggaaggggtcccaccatttt 31158503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 32781308 - 32781351
Alignment:
Q  147 aaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||    
T  32781308 aaagctcccgcatacacagggtctgggaaggggtcccaccattt 32781351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 17380231 - 17380300
Alignment:
Q  120 aataaataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    ||||||||||||| || ||||| ||| ||||||||||||| | ||| ||| |||||||||||||| |||||    
T  17380231 aataaataaagggaagcccggtgcac-aaagctcccgcatccgcagggtccaggaaggggttccatcattt 17380300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 33795400 - 33795359
Alignment:
Q  147 aaagctcccgcatacacagagtctaggaaggggttccaccat 188  Q
    ||||||||||||||||||| |||| ||||||||| |||||||    
T  33795400 aaagctcccgcatacacagggtctgggaaggggtcccaccat 33795359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 36871631 - 36871564
Alignment:
Q  122 taaataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    |||| ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| |||||||||    
T  36871631 taaaaaaagggcaacccggtgcactaaagctcccgcatacgcag-gtccgggaaggggtcccaccattt 36871564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 40579750 - 40579810
Alignment:
Q  128 aagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccat 188  Q
    |||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| |||||||    
T  40579750 aagggcaacccggtgcactaaagctcccgcatactcagggtccgggaaggggtcccaccat 40579810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 6808530 - 6808468
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatt 189  Q
    ||||||||  ||||| ||||||||||||||||||||||| |||  ||||||||| ||||||||    
T  6808530 aaagggcaacccggtgcactaaagctcccgcatacacagggtccgggaaggggtcccaccatt 6808468  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 13628256 - 13628309
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggt 180  Q
    |||||||| ||| || ||||||| ||||||||||| ||||||||||||||||||    
T  13628256 aaagggcaatccagtgcactaaaactcccgcatacgcagagtctaggaaggggt 13628309  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 18277203 - 18277256
Alignment:
Q  137 ccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    ||||| || ||||||||||||||||  ||||||||||||||||| |||||||||    
T  18277203 ccggtgcagtaaagctcccgcatacgtagagtctaggaaggggtcccaccattt 18277256  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 12886048 - 12885984
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatttt 191  Q
    ||||||||  ||||| ||||||||||||| ||||| ||| |||| ||||||||| ||||||||||    
T  12886048 aaagggcaacccggtgcactaaagctcccacatacgcagggtctgggaaggggtcccaccatttt 12885984  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 13267860 - 13267797
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    ||||||||  ||||| |||| |||||||||||||| ||| ||| |||||||||| |||||||||    
T  13267860 aaagggcaacccggtgcactgaagctcccgcatacgcagggtccaggaaggggtcccaccattt 13267797  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 29355855 - 29355917
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatt 189  Q
    ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| ||||||||    
T  29355855 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 29355917  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 14390875 - 14390924
Alignment:
Q  144 actaaagctcccgcatacacagagtctaggaaggggttccaccattttgg 193  Q
    |||| ||||||||||||||||||||||  ||| |||| ||||||||||||    
T  14390875 actacagctcccgcatacacagagtctgagaaagggtcccaccattttgg 14390924  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 193
Target Start/End: Original strand, 53996565 - 53996631
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattttgg 193  Q
    ||||||||| ||||| ||||||||||||| ||||| ||| |||  ||||||||| ||||||||||||    
T  53996565 aaagggcagcccggtgcactaaagctcccacatacgcagtgtcagggaaggggtcccaccattttgg 53996631  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 19731155 - 19731099
Alignment:
Q  131 ggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccacca 187  Q
    ||||| ||||| |||||||||||| ||||||||||||||| |||| |||| ||||||    
T  19731155 ggcagcccggtgcactaaagctcctgcatacacagagtctgggaaagggtcccacca 19731099  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 40272812 - 40272875
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| |||||||||    
T  40272812 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 40272875  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 54484848 - 54484785
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| |||||||||    
T  54484848 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 54484785  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 13628790 - 13628852
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatt 189  Q
    ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| ||||||||    
T  13628790 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatt 13628852  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 10484616 - 10484669
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggt 180  Q
    ||||||||  ||||| ||||||||||||||||||| ||| ||| ||||||||||    
T  10484616 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccaggaaggggt 10484669  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 10795422 - 10795487
Alignment:
Q  126 taaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatttt 191  Q
    |||||||||  | ||| |||| |||||||||||||| ||| ||| |||||||||| ||||||||||    
T  10795422 taaagggcaacctggtgcactgaagctcccgcatacgcagggtccaggaaggggtcccaccatttt 10795487  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 516569 - 516505
Alignment:
Q  127 aaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccatttt 191  Q
    ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| || |||||||    
T  516569 aaagggcaacccggtgcactaaagctcccgcatacgcagggtcggggaaggggtcccgccatttt 516505  T

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Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 46726 - 46779
Alignment:
Q  146 taaagctcccgcatacacagagtctaggaaggggttccaccattttggcatatt 199  Q
    |||||||||||||||| ||| |||| ||||||||| |||||||||||| |||||    
T  46726 taaagctcccgcatacgcagggtctgggaaggggtcccaccattttggtatatt 46779  T

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Target: scaffold0057; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 46972 - 46903
Alignment:
Q  121 ataaataaagggcagtccggttcactaaagctcccgcatacacagagtctaggaaggggttccaccattt 190  Q
    ||||| ||||||||  ||||| ||||||||||||||||||| ||| |||  ||||||||| |||||||||    
T  46972 ataaaaaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt 46903  T

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