View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21471_high_12 (Length: 203)
Name: NF21471_high_12
Description: NF21471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21471_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 40277466 - 40277285
Alignment:
| Q |
1 |
gatcacaagcattggacgatccatattttctatggtggaagatattagtcttgctctttcggcttcatcaaatcttatattcaaggagtcagcaatttca |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40277466 |
gatcacaagtattggacgatccatattttctatggtggaagatattagtcttgctctttcggcttcatcaaatctaatattcaaggagtcagcaatttca |
40277367 |
T |
|
| Q |
101 |
tcttgcattgctgtgatatttgggattttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgactttct |
182 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40277366 |
tcttgcattgctgtgatatttgggtttttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgactttct |
40277285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 40376620 - 40376430
Alignment:
| Q |
1 |
gatcacaagcattggacgatccatattttctatggtggaagatattagtcttgctctttcggcttca---------tcaaatcttatattcaaggagtca |
91 |
Q |
| |
|
||||||||| || ||| |||||||||||||||| ||||| ||||| |||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
40376620 |
gatcacaagtataggatgatccatattttctattgtggataatatttttcttgctctttcagcttcactgtttctatcaaatcttatattcaaggagtca |
40376521 |
T |
|
| Q |
92 |
gcaatttcatcttgcattgctgtgatatttgggattttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgactttct |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| ||||||||||||| || ||||||||| |
|
|
| T |
40376520 |
gcaatttcatcttgcattgctgtgatatttgggtttttggtcacattgacaaataaaatctcatcaaaaatatttaaaaacatgactttct |
40376430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 5 - 182
Target Start/End: Complemental strand, 40386861 - 40386675
Alignment:
| Q |
5 |
acaagcattggacgatccatattttctatggtggaagatattagtcttgctctttcggcttca---------tcaaatcttatattcaaggagtcagcaa |
95 |
Q |
| |
|
||||| |||||||||||||||| |||||| ||||| ||||| |||||||||| | |||||| |||||||||||||||||||||||||||| |
|
|
| T |
40386861 |
acaagtattggacgatccatatcttctattgtggataatattcttcttgctcttccagcttcactgtttctatcaaatcttatattcaaggagtcagcaa |
40386762 |
T |
|
| Q |
96 |
tttcatcttgcattgctgtgatatttgggattttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgactttct |
182 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| ||||||||| ||||| | |||||||| |
|
|
| T |
40386761 |
tttcatcttgcattgctgtgatatttgggtttttggtcacattgacaaataaaatctcatcaaaaatattcaaatattggactttct |
40386675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 40333587 - 40333397
Alignment:
| Q |
1 |
gatcacaagcattggacgatccatattttctatggtggaagatattagtcttgctctttcggcttca---------tcaaatcttatattcaaggagtca |
91 |
Q |
| |
|
||||||||| |||||||||||||||| |||||| ||||| ||||| |||||||||| | | |||| || ||||||||||||||| ||||| |
|
|
| T |
40333587 |
gatcacaagtattggacgatccatatcttctattgtggataatatttttcttgctcttccagtttcactgtttctatctaatcttatattcaagaagtca |
40333488 |
T |
|
| Q |
92 |
gcaatttcatcttgcattgctgtgatatttgggattttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgactttct |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| ||||||||| ||||| | |||||||| |
|
|
| T |
40333487 |
gcaatttcatcttgcattgctgtgatatttgggtttttggtcacattgacaaataaaatctcatcaaaaatattcaaatattggactttct |
40333397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University