View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21471_high_3 (Length: 341)
Name: NF21471_high_3
Description: NF21471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21471_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 156 - 326
Target Start/End: Complemental strand, 45667047 - 45666877
Alignment:
| Q |
156 |
cctggattttcttcaggtttattactaagtattcctgtgaatggtatctccttttccatgtataatgatgatccatgccgtgttttcttgcgataaacac |
255 |
Q |
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| T |
45667047 |
cctggattttcttcaggtttattactaagtattcctgtgaatggtatctccttttccatgtataatgatgatccacgccgtgttttcttgcgataaacac |
45666948 |
T |
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| Q |
256 |
atgatctgacattgttacaccatccacctccctgacagagtattttctctttagtatcactataacttttt |
326 |
Q |
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| T |
45666947 |
atgatctgacattgttacaccatccacctccctgacagagtattttctctttagtatcactataacttttt |
45666877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 45667188 - 45667097
Alignment:
| Q |
15 |
catcacaataacgaagctttactctattccagttgaaaaaatctgcgaacacgagcaacaataacatgatcagagagactaatgcctacaac |
106 |
Q |
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| T |
45667188 |
catcacaataacgaagctttgctctattccagttgaaaaaatctgcgaacacgagcaacaataacatgatcagagagactaatgcctacaac |
45667097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 38257829 - 38257767
Alignment:
| Q |
156 |
cctggattttcttcaggtttattactaagtattcctgtgaatggtatctccttttccatgtat |
218 |
Q |
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| T |
38257829 |
cctgggttttcttcaggtttattgctcaatattcctgtgaatggtatttgattttccatgtat |
38257767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 51344492 - 51344537
Alignment:
| Q |
15 |
catcacaataacgaagctttactctattccagttgaaaaaatctgc |
60 |
Q |
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| T |
51344492 |
catcacaataacgaatttttactctattccaattgaaaaaatctgc |
51344537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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