View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21471_low_1 (Length: 394)
Name: NF21471_low_1
Description: NF21471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21471_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 1024485 - 1024091
Alignment:
| Q |
1 |
cgtgattccaaatatccaccacacctagggaacaaaaaataacttaaggtgtactaacttacaactatctagaatctagattactcttgcacacatagtt |
100 |
Q |
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| T |
1024485 |
cgtgattccaaatatccaccacacctagggaacaaaaaataacttaaggtgtactaacttacaactatctagaatctagattactcttgcacacatagtt |
1024386 |
T |
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| Q |
101 |
---agtaataagaattttaatacatgcaagccacaacttgattctactatattatggcaatacaggaagcagcacattccattgataattaa-------- |
189 |
Q |
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| T |
1024385 |
aggagtaataagaattttaatacatgcaagccacaacttgattctactatattatggcaatacaggaagcagcacattccattgataattaactctcaaa |
1024286 |
T |
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| Q |
190 |
----tcattgaattcatagaataagtgacacataagaccaacacggagtctgaatcggcagaagactccatacttcttattttctcaaatagtatttcaa |
285 |
Q |
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| T |
1024285 |
tgtttcattgaattcatagaataagtgacacataagaccaacacggagtctgaattggcagaagactccatacttcttattttctcaaatagtatttcaa |
1024186 |
T |
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| Q |
286 |
aattttggtggcccaatcaaagtacgaattgcaattgaatgtgtacctatatgctttgattgcctttaaatgaatatcaaacacactgtcctatg |
380 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
1024185 |
aattttggtggcccaatcaaagtacgaatagcaattgaatgtgtacctatatgctttgattgccttgaattgaatatcaaacacactgtcctatg |
1024091 |
T |
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