View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21471_low_2 (Length: 357)

Name: NF21471_low_2
Description: NF21471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21471_low_2
NF21471_low_2
[»] chr7 (1 HSPs)
chr7 (10-357)||(27003788-27004134)


Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 10 - 357
Target Start/End: Original strand, 27003788 - 27004134
Alignment:
Q  10 ggcaaattaggtgaatagtttgtccttaattagattaaactttgcttcaaagaatactgtaaatcttgctatnnnnnnn-tatataaattttttatttga 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||        |||||||||||||||||| |    
T  27003788 ggcaaattaggtgaatagtttgtccttaattagattaaactttgcttcaaagaatactataaaacttgctataaaaaatatatataaattttttatttaa 27003887  T
Q  109 tggaatcatatggttgttgatatgcttccactttcagcaattttatatagttttgatgctaaatatctttgagcacttgaatattttatgtcaacaaggt 208  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27003888 tggaatcatatggttgttgatatgcttccactttcagtaattttatatagttttgatgctaaatatctttgagcacttgaatattttatgtcaacaagat 27003987  T
Q  209 tacagcttctgtttttaatatattttaagtttaaaaagaacactcatcctcatcttttcaacctcatcttattttaactttttcaaaatgtgctagtatt 308  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27003988 tacagcttctgtttttaatatattttaagtttaaaaaga--actcatcctcatcttttcaacctcatcttattttaactttttcaaaatgtgctagtatt 27004085  T
Q  309 tgagtttaatttagtgcatgtttagatcttagttgtgtatagtctcatt 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27004086 tgagtttaatttagtgcatgtttagatcttagttgtgtatagtctcatt 27004134  T

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