View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21471_low_4 (Length: 340)
Name: NF21471_low_4
Description: NF21471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21471_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 6969054 - 6968744
Alignment:
| Q |
1 |
cttctttcttggctttcatctcagcttcttccttggaggttctaagtgcttggatcaacctctccaatgatgcctcaacatcttcatcagctaccttagg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6969054 |
cttctttcttggctttcatctcagcttcttccttggaggttctaagtgcttggatcaacctctccaatgatgcctcaacatcttcctcagctaccttagg |
6968955 |
T |
|
| Q |
101 |
catcaagttttcagcaacatcagccggagtcatgttagtctcttccaacaagcgttgaatcgtctcgaacaaaggatgagattcaatactcagataattc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6968954 |
catcaagttttcagcaacatcagccggagtcatgttagtctcttccaacaagcgttgaatcgtctcgaacaaaggatgagattcaatactcagataattc |
6968855 |
T |
|
| Q |
201 |
attgccaacattttgaatccatcaaaaccacagtaagacaactcaatatgcatgtccattcgtccacgacgaatcaaagcttgatcaagtttctccacat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6968854 |
attgccaacattttgaatccatcaaaaccacagtaagacaactcaatatgcatgtccattcgtccacgacgaatcaaagcttgatcaagtttctccacat |
6968755 |
T |
|
| Q |
301 |
agtgagtagta |
311 |
Q |
| |
|
||| ||||||| |
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| T |
6968754 |
agttagtagta |
6968744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 1000205 - 1000502
Alignment:
| Q |
1 |
cttctttcttggctttcatctcagcttcttccttggaggttctaagtgcttggatcaa--cctctccaatgatgcctcaacatcttcatcagctacctta |
98 |
Q |
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|||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
1000205 |
cttctttcttagctttcatctcagcctcttccttagaggttctaagtgcttggatcaaagcctctccaatgatgcctcaacatcttcat-agctacctta |
1000303 |
T |
|
| Q |
99 |
ggcatcaagttttcagcaacatcagccggagtcatgttagtctcttccaacaagcgttgaatcgtctcgaacaaaggatgagattcaatactcagataat |
198 |
Q |
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||||||||||||||||||||||||||| |||| ||||| |||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
1000304 |
ggcatcaagttttcagcaacatcagcctgagttatgttggtctcttccaacaagcatcgaaccgtcttgaacaaaggatgagattcaatactcagataac |
1000403 |
T |
|
| Q |
199 |
tcattgccaacattttgaatccatcaaaaccacagtaagacaactcaat----atgcatgtccattcgtccacgacgaatcaaagcttgatcaagtttc |
293 |
Q |
| |
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||||||| | |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1000404 |
tcattgctagcattttgaatccatcaaaaccacaataagacaactcaatatgcatgcatgtccattcgtccacgacgaatcaaagcttgatcaagtttc |
1000502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 27 - 260
Target Start/End: Original strand, 51316041 - 51316276
Alignment:
| Q |
27 |
tcttccttggaggttctaagtgctt--ggatcaacctctccaatgatgcctcaacatcttcatcagctaccttaggcatcaagttttcagcaacatcagc |
124 |
Q |
| |
|
|||||||| ||| ||||||| |||| | ||||||||||||||||| | |||||||||||||| || |||||||||||||||||||| |||||||||||| |
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|
| T |
51316041 |
tcttccttagagcttctaagggcttttgtatcaacctctccaatgaggtctcaacatcttcattagataccttaggcatcaagtttttagcaacatcagc |
51316140 |
T |
|
| Q |
125 |
cggagtcatgttagtctcttccaacaagcgttgaatcgtctcgaacaaaggatgagattcaatactcagataattcattgccaacattttgaatccatca |
224 |
Q |
| |
|
|| ||||| ||||||||||||||||||| | ||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
51316141 |
tggtgtcatattagtctcttccaacaagcatctaatcgtctcgagcaaaaaatgagattcaagactcagataattcattgccaacattttgaatccatca |
51316240 |
T |
|
| Q |
225 |
aaaccacagtaagacaactcaatatgcatgtccatt |
260 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||||| |
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|
| T |
51316241 |
aaaccacaataagacaattcaatatgcatatccatt |
51316276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 40 - 310
Target Start/End: Complemental strand, 2178306 - 2178036
Alignment:
| Q |
40 |
ttctaagtgcttggatcaacctctccaatgatgcctcaacatcttcatcagctaccttaggcatcaagttttcagcaacatcagccggagtcatgttagt |
139 |
Q |
| |
|
||||||||||||| ||||||||| ||||| | | |||||||||||| | ||||||| |||||||| ||||||||||||||||| || ||||| ||||| |
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|
| T |
2178306 |
ttctaagtgcttgaatcaacctcaacaatggagtcgcaacatcttcattatctacctttggcatcaaattttcagcaacatcagctggtgtcatattagt |
2178207 |
T |
|
| Q |
140 |
ctcttccaacaagcgttgaatcgtctcgaacaaaggatgagattcaatactcagataattcattgccaacattttgaatccatcaaaaccacagtaagac |
239 |
Q |
| |
|
|||| ||||||||| | |||| | ||||||||| ||||||||||| ||||||||| ||| ||||||||||||||||||||||||||| ||| |||| | |
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| T |
2178206 |
ctctaccaacaagcatgcaatcttgtcgaacaaaaaatgagattcaagactcagatacttcgttgccaacattttgaatccatcaaaacaacaataaggc |
2178107 |
T |
|
| Q |
240 |
aactcaatatgcatgtccattcgtccacgacgaatcaaagcttgatcaagtttctccacatagtgagtagt |
310 |
Q |
| |
|
|| || ||| |||||||||||| ||| |||| ||| ||||| ||||||||||||||| |||||| |||||| |
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|
| T |
2178106 |
aattcgataagcatgtccattcttcctcgacaaattaaagcatgatcaagtttctccgcatagttagtagt |
2178036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 2842843 - 2842791
Alignment:
| Q |
99 |
ggcatcaagttttcagcaacatcagccggagtcatgttagtctcttccaacaa |
151 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||||| ||||||||||||||||| |
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| T |
2842843 |
ggcatcaaattttcagcaacatcagcaggtgtcatattagtctcttccaacaa |
2842791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 2829437 - 2829385
Alignment:
| Q |
99 |
ggcatcaagttttcagcaacatcagccggagtcatgttagtctcttccaacaa |
151 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||||| ||||||| ||||||||| |
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|
| T |
2829437 |
ggcatcaaattttcagcaacatcagcaggtgtcatattagtcttttccaacaa |
2829385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 2832777 - 2832829
Alignment:
| Q |
99 |
ggcatcaagttttcagcaacatcagccggagtcatgttagtctcttccaacaa |
151 |
Q |
| |
|
|||||||| || |||||||||||||| || ||||| ||||||||| ||||||| |
|
|
| T |
2832777 |
ggcatcaaattctcagcaacatcagcaggtgtcatattagtctctcccaacaa |
2832829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 2909484 - 2909536
Alignment:
| Q |
99 |
ggcatcaagttttcagcaacatcagccggagtcatgttagtctcttccaacaa |
151 |
Q |
| |
|
|||||||| || |||||||||||||| || ||||| ||||||||| ||||||| |
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|
| T |
2909484 |
ggcatcaaattctcagcaacatcagcaggtgtcatattagtctctcccaacaa |
2909536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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