View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21471_low_5 (Length: 326)

Name: NF21471_low_5
Description: NF21471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21471_low_5
NF21471_low_5
[»] chr3 (4 HSPs)
chr3 (83-208)||(39948719-39948841)
chr3 (246-307)||(39948621-39948682)
chr3 (266-307)||(37278527-37278568)
chr3 (266-307)||(49285603-49285644)
[»] scaffold0160 (1 HSPs)
scaffold0160 (266-307)||(22178-22219)
[»] chr2 (4 HSPs)
chr2 (266-307)||(18741389-18741430)
chr2 (266-307)||(5618490-5618531)
chr2 (278-307)||(19954903-19954932)
chr2 (275-307)||(39417538-39417570)
[»] chr1 (5 HSPs)
chr1 (275-307)||(16867400-16867432)
chr1 (266-307)||(2208889-2208930)
chr1 (266-307)||(19596647-19596688)
chr1 (266-307)||(50145124-50145165)
chr1 (275-307)||(236664-236696)
[»] chr8 (2 HSPs)
chr8 (263-306)||(32778595-32778638)
chr8 (275-307)||(15589256-15589288)
[»] chr7 (2 HSPs)
chr7 (266-307)||(37938055-37938096)
chr7 (275-307)||(12961824-12961856)
[»] chr5 (1 HSPs)
chr5 (266-307)||(19090532-19090573)
[»] chr4 (4 HSPs)
chr4 (268-305)||(33324985-33325022)
chr4 (275-308)||(40597557-40597590)
chr4 (275-307)||(37340108-37340140)
chr4 (275-307)||(46343425-46343457)


Alignment Details
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 83 - 208
Target Start/End: Complemental strand, 39948841 - 39948719
Alignment:
Q  83 gttgaaccatgttattttcgttatatatagtatatgtaaatattttagtttgaaaaatgttaggaacgtcaccgctttatgtggaataaatttccaatat 182  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  39948841 gttgaaccatgttattttcattatatatagtatatgtaaatattttagtttgaaaaatgttaggaacgtcaccgctttatgtaaaataaatttccaatat 39948742  T
Q  183 atggtatcacatgaatttcatttaat 208  Q
    |||||   ||||||||||||||||||    
T  39948741 atggt---acatgaatttcatttaat 39948719  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 39948682 - 39948621
Alignment:
Q  246 tgtcaataacactactcttcttttttatatagatagacgagatgacaaagtcatcataaact 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39948682 tgtcaataacactactcttcttttttatatagatagacgagatgacaaagtcatcataaact 39948621  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 37278527 - 37278568
Alignment:
Q  266 ttttttatatagatagacgagatgacaaagtcatcataaact 307  Q
    |||||| | |||||||||||||||||||||||||||||||||    
T  37278527 ttttttttgtagatagacgagatgacaaagtcatcataaact 37278568  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 49285644 - 49285603
Alignment:
Q  266 ttttttatatagatagacgagatgacaaagtcatcataaact 307  Q
    |||||| ||||||||||||| ||||||||||||| |||||||    
T  49285644 ttttttttatagatagacgaaatgacaaagtcattataaact 49285603  T

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Target: scaffold0160 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 22219 - 22178
Alignment:
Q  266 ttttttatatagatagacgagatgacaaagtcatcataaact 307  Q
    |||||| | |||||||||||||||||||||||||||||||||    
T  22219 ttttttttttagatagacgagatgacaaagtcatcataaact 22178  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 18741389 - 18741430
Alignment:
Q  266 ttttttatatagatagacgagatgacaaagtcatcataaact 307  Q
    |||||| | |||||||||||||||||||||||||||||||||    
T  18741389 ttttttttttagatagacgagatgacaaagtcatcataaact 18741430  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 5618531 - 5618490
Alignment:
Q  266 ttttttatatagatagacgagatgacaaagtcatcataaact 307  Q
    |||||| | |||||| ||||||||||||||||||||||||||    
T  5618531 ttttttttgtagataaacgagatgacaaagtcatcataaact 5618490  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 307
Target Start/End: Original strand, 19954903 - 19954932
Alignment:
Q  278 atagacgagatgacaaagtcatcataaact 307  Q
    ||||||||||||||||||||||||||||||    
T  19954903 atagacgagatgacaaagtcatcataaact 19954932  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 307
Target Start/End: Complemental strand, 39417570 - 39417538
Alignment:
Q  275 tagatagacgagatgacaaagtcatcataaact 307  Q
    |||||||||||||||| ||||||||||||||||    
T  39417570 tagatagacgagatgataaagtcatcataaact 39417538  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 307
Target Start/End: Original strand, 16867400 - 16867432
Alignment:
Q  275 tagatagacgagatgacaaagtcatcataaact 307  Q
    |||||||||||||||||||||||||||||||||    
T  16867400 tagatagacgagatgacaaagtcatcataaact 16867432  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 2208889 - 2208930
Alignment:
Q  266 ttttttatatagatagacgagatgacaaagtcatcataaact 307  Q
    |||||||| ||||||||||| ||||||||||||| |||||||    
T  2208889 ttttttatgtagatagacgaaatgacaaagtcattataaact 2208930  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 19596647 - 19596688
Alignment:
Q  266 ttttttatatagatagacgagatgacaaagtcatcataaact 307  Q
    |||||| ||||||||||||||||| |||||||||| ||||||    
T  19596647 ttttttttatagatagacgagatggcaaagtcatcgtaaact 19596688  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 50145124 - 50145165
Alignment:
Q  266 ttttttatatagatagacgagatgacaaagtcatcataaact 307  Q
    |||||| ||||||||||||| ||||||||||||| |||||||    
T  50145124 ttttttttatagatagacgaaatgacaaagtcattataaact 50145165  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 307
Target Start/End: Complemental strand, 236696 - 236664
Alignment:
Q  275 tagatagacgagatgacaaagtcatcataaact 307  Q
    ||||||||| |||||||||||||||||||||||    
T  236696 tagatagacaagatgacaaagtcatcataaact 236664  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 32778638 - 32778595
Alignment:
Q  263 ttcttttttatatagatagacgagatgacaaagtcatcataaac 306  Q
    ||||||||| | ||||||||||||||||||||| ||||||||||    
T  32778638 ttcttttttttttagatagacgagatgacaaagccatcataaac 32778595  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 307
Target Start/End: Original strand, 15589256 - 15589288
Alignment:
Q  275 tagatagacgagatgacaaagtcatcataaact 307  Q
    |||||||||||||||||||| ||||||||||||    
T  15589256 tagatagacgagatgacaaattcatcataaact 15589288  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 37938055 - 37938096
Alignment:
Q  266 ttttttatatagatagacgagatgacaaagtcatcataaact 307  Q
    |||||| | |||||| ||||||||||||||||||||||||||    
T  37938055 ttttttttttagataaacgagatgacaaagtcatcataaact 37938096  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 307
Target Start/End: Original strand, 12961824 - 12961856
Alignment:
Q  275 tagatagacgagatgacaaagtcatcataaact 307  Q
    |||||||| ||||||||||||||||||||||||    
T  12961824 tagatagaagagatgacaaagtcatcataaact 12961856  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 19090573 - 19090532
Alignment:
Q  266 ttttttatatagatagacgagatgacaaagtcatcataaact 307  Q
    |||||| ||||||||||||| ||||||||||||| |||||||    
T  19090573 ttttttttatagatagacgaaatgacaaagtcattataaact 19090532  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 33325022 - 33324985
Alignment:
Q  268 ttttatatagatagacgagatgacaaagtcatcataaa 305  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  33325022 ttttagatagatagacgagatgacaaattcatcataaa 33324985  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Complemental strand, 40597590 - 40597557
Alignment:
Q  275 tagatagacgagatgacaaagtcatcataaactt 308  Q
    |||||||||||||||||||| |||||||||||||    
T  40597590 tagatagacgagatgacaaaatcatcataaactt 40597557  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 307
Target Start/End: Original strand, 37340108 - 37340140
Alignment:
Q  275 tagatagacgagatgacaaagtcatcataaact 307  Q
    |||||||||||||||||||| ||||||||||||    
T  37340108 tagatagacgagatgacaaaatcatcataaact 37340140  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 307
Target Start/End: Complemental strand, 46343457 - 46343425
Alignment:
Q  275 tagatagacgagatgacaaagtcatcataaact 307  Q
    |||||||| ||||||||||||||||||||||||    
T  46343457 tagatagaagagatgacaaagtcatcataaact 46343425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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