View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21471_low_6 (Length: 275)
Name: NF21471_low_6
Description: NF21471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21471_low_6 |
 | |
|
| [»] scaffold0070 (3 HSPs) |
| | |
|
| [»] scaffold1415 (1 HSPs) |
| | |
|
| [»] scaffold0830 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 25476729 - 25476978
Alignment:
| Q |
9 |
ttagcatattttgggacaagtccaaggaggtcaagctcaccatttcaccaagtgatgatggaattgatccattcagtttgttatgcgctaatgataggtt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25476729 |
ttagcatattttgggacaagtccaaggaggtcaagctcaccatttcaccaagtgatgatggaattgatccattcagtttgttatgcgctaatgataggtt |
25476828 |
T |
|
| Q |
109 |
ttgcaaagttactaaggaactaatggttgaaggaatgtttcttgaaatattatttcctgatagatctaaaactacaattgctctcaaattcccaatctca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25476829 |
ttgcaaagttactaaggaactaatggttgaaggaatgtttcttgaaatattatttcctgatagatctaaaactacaattgctctcaaattcccaatctca |
25476928 |
T |
|
| Q |
209 |
gatggaagattcccaatgaaggcattataagacaaatctacctctaagat |
258 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25476929 |
ggtggaagattcccaatgaaggcattataagacaaatctacctctaagat |
25476978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 227
Target Start/End: Original strand, 25716262 - 25716479
Alignment:
| Q |
10 |
tagcatattttgggacaagtccaaggaggtcaagctcaccatttcaccaagtgatgatggaattgatccattcagtttgttatgcgctaatgataggttt |
109 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| |||||||||| ||||||||| |||||||||||||||| ||||||||| ||||| || || | |
|
|
| T |
25716262 |
tagcatattttgggacaagtccaaagagaccaagcttaccatttcactaagtgatgagggaattgatccattcaatttgttatgagctaaggacagagtc |
25716361 |
T |
|
| Q |
110 |
tgcaaagttactaaggaactaatggttgaaggaatgtttcttgaaatattatttcctgatagatctaaaactacaattgctctcaaattcccaatctcag |
209 |
Q |
| |
|
|||||| || ||||||||| ||||||| ||||||||||||||||||| ||||| |||||||||||| ||||||||| |||||||||||||| ||||| |
|
|
| T |
25716362 |
tgcaaattttgtaaggaactgatggttgtgggaatgtttcttgaaatatgatttcttgatagatctaatactacaatttgtctcaaattcccaacctcag |
25716461 |
T |
|
| Q |
210 |
atggaagattcccaatga |
227 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
25716462 |
gtggaagatcaccaatga |
25716479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 25570952 - 25571146
Alignment:
| Q |
10 |
tagcatattttgggacaagtccaaggaggtcaagctcaccatttcaccaagtgatgatggaattgatccattcagtttgttatgcgctaatgataggttt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||| ||||||| ||||||||| ||||| || || || |
|
|
| T |
25570952 |
tagcatattttgggacaagtccaaggagatcaagcttaccatttcaccaagtgatgtgggaattgacccattcaatttgttatgagctaaggagagattc |
25571051 |
T |
|
| Q |
110 |
tgcaaagttactaaggaactaatggttgaaggaatgtttcttgaaatattatttcctgatagatctaaaactacaattgctctcaaattcccaat |
204 |
Q |
| |
|
|||||| || ||||||||| ||||||| |||||||| |||||||| | ||||| |||||||||||| | ||||| | |||||||||||||||| |
|
|
| T |
25571052 |
tgcaaattttgtaaggaactgatggttgttggaatgttgcttgaaatttgatttcttgatagatctaatattacaagttctctcaaattcccaat |
25571146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 25605709 - 25605954
Alignment:
| Q |
13 |
catattttgggacaagtccaaggaggtcaagctcaccatttcaccaagtgatgatggaattgatccattcagtttgttatgcgctaatgataggttttgc |
112 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| | ||||| |||||||||| |||||||||||||||||||| |||| ||||| || || || ||| |
|
|
| T |
25605709 |
catattttgggacaagtccaaagagatcaagcttatcatttgaccaagtgattcaggaattgatccattcagtttattatctgctaaggagagcttctgc |
25605808 |
T |
|
| Q |
113 |
aaagttactaaggaactaatggttgaaggaatgtttcttgaaatattatttcctgatagatctaaaactacaattgctctcaaattcccaatctcagatg |
212 |
Q |
| |
|
|| ||| ||||| ||| ||||||| |||||||| |||||||| | ||||| |||||| ||||| | || |||||||||||||||||||||||||| || |
|
|
| T |
25605809 |
aatgtttgtaagggactgatggttgttggaatgttgcttgaaatctgatttcttgataggtctaatagtataattgctctcaaattcccaatctcaggtg |
25605908 |
T |
|
| Q |
213 |
gaagattcccaatgaaggcattataagacaaatctacctctaagat |
258 |
Q |
| |
|
| ||||| || ||||| |||||| | ||||||||||||| |||||| |
|
|
| T |
25605909 |
gcagattaccgatgaacgcattagaggacaaatctacctgtaagat |
25605954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 25696432 - 25696644
Alignment:
| Q |
13 |
catattttgggacaagtccaaggaggtcaagctcaccatttcaccaagtgatgatggaattgatccattcagtttgttatgcgctaatgataggttttgc |
112 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| |||||||||||||||||| |||| ||| ||||||||||| |||| ||||| || || || ||| |
|
|
| T |
25696432 |
catattttgggacaagtccaaagagatcaagcttaccatttcaccaagtgatttgggaactgaaccattcagtttattatctgctaaggagagattctgc |
25696531 |
T |
|
| Q |
113 |
aaagttactaaggaactaatggttgaaggaatgtttcttgaaatattatttcctgatagatctaaaactacaattgctctcaaattcccaatctcagatg |
212 |
Q |
| |
|
|| |||| ||||||| ||||||||| |||||||| |||||||| | ||||| |||||| ||||| | || |||||||||||||||||||||||||| || |
|
|
| T |
25696532 |
aatgttaataaggaattaatggttgttggaatgttgcttgaaatctgatttcttgataggtctaatagtataattgctctcaaattcccaatctcaggtg |
25696631 |
T |
|
| Q |
213 |
gaagattcccaat |
225 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
25696632 |
gaagattaccaat |
25696644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 25392364 - 25392576
Alignment:
| Q |
13 |
catattttgggacaagtccaaggaggtcaagctcaccatttcaccaagtgatgatggaattgatccattcagtttgttatgcgctaatgataggttttgc |
112 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| ||||||| ||||| |||| |||||||||||||||||||| |||| ||||| || || || ||| |
|
|
| T |
25392364 |
catattttgggacaagtccaaagagatcaagcttaccatttgaccaattgatttgggaattgatccattcagtttattatctgctaaggagagtttctgc |
25392463 |
T |
|
| Q |
113 |
aaagttactaaggaactaatggttgaaggaatgtttcttgaaatattatttcctgatagatctaaaactacaattgctctcaaattcccaatctcagatg |
212 |
Q |
| |
|
|| |||| ||||||| ||||||||| |||||||| |||||||| | ||||| |||||| ||||| || |||||||||||||||||||||||||| || |
|
|
| T |
25392464 |
aatgttagtaaggaattaatggttgttggaatgttgcttgaaatctgatttcttgataggtctaatcgtataattgctctcaaattcccaatctcaggtg |
25392563 |
T |
|
| Q |
213 |
gaagattcccaat |
225 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
25392564 |
gaagattaccaat |
25392576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 25323728 - 25323932
Alignment:
| Q |
13 |
catattttgggacaagtccaaggaggtcaagctcaccatttcaccaagtgatgatggaattgatccattcagtttgttatgcgctaatgataggttttgc |
112 |
Q |
| |
|
|||||||| |||||||||||| ||| | || || |||||||||||||||||| |||||||| ||||||||||| |||| ||||| || || || ||| |
|
|
| T |
25323728 |
catatttttggacaagtccaaagagattaatcttaccatttcaccaagtgatttgggaattgaaccattcagtttattatctgctaaggagagattctgc |
25323827 |
T |
|
| Q |
113 |
aaagttactaaggaactaatggttgaaggaatgtttcttgaaatattatttcctgatagatctaaaactacaattgctctcaaattcccaatctcagatg |
212 |
Q |
| |
|
|| |||| ||||||| ||||||||| |||||||| |||||||| | ||||| |||||| ||||| | ||||||||||||||||||||||||||||| || |
|
|
| T |
25323828 |
aatgttaataaggaattaatggttgttggaatgttgcttgaaatctgatttcttgatagttctaatagtacaattgctctcaaattcccaatctcaggtg |
25323927 |
T |
|
| Q |
213 |
gaaga |
217 |
Q |
| |
|
||||| |
|
|
| T |
25323928 |
gaaga |
25323932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 25454054 - 25454266
Alignment:
| Q |
13 |
catattttgggacaagtccaaggaggtcaagctcaccatttcaccaagtgatgatggaattgatccattcagtttgttatgcgctaatgataggttttgc |
112 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| ||||||| |||||||||| |||||||||||| ||||||| || || ||||| || || ||| |
|
|
| T |
25454054 |
catattttgggacaagtccaaagagatcaagcttaccatttgaccaagtgatttgggaattgatccaatcagtttattttgtgctaagacgagattctgc |
25454153 |
T |
|
| Q |
113 |
aaagttactaaggaactaatggttgaaggaatgtttcttgaaatattatttcctgatagatctaaaactacaattgctctcaaattcccaatctcagatg |
212 |
Q |
| |
|
|| ||| ||||||||| || ||| |||||||| |||||||| | ||||| |||||| ||||| | || |||||||||||||||||||||||||| || |
|
|
| T |
25454154 |
aatgtttgtaaggaactgattattgttggaatgttgcttgaaatctgatttcttgataggtctaatagtataattgctctcaaattcccaatctcaggtg |
25454253 |
T |
|
| Q |
213 |
gaagattcccaat |
225 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
25454254 |
gaagattaccaat |
25454266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 24874456 - 24874261
Alignment:
| Q |
9 |
ttagcatattttgggacaagtccaaggaggtcaagctcaccatttcaccaagtgatgatggaattgatccattcagtttgttatgcgctaatgataggtt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||| | ||||| ||||||||||| ||||||| ||||||| ||| ||||| || || || || || |
|
|
| T |
24874456 |
ttagcatattttgggacaagtccaaggagattaagcttatcattttaccaagtgatgtgggaattggcccattcaatttattatgagccaaggagagatt |
24874357 |
T |
|
| Q |
109 |
ttgcaaagttactaaggaactaatggttgaaggaatgtttcttgaaatattatttcctgatagatctaaaactacaattgctctcaaattcccaat |
204 |
Q |
| |
|
|||||| || ||||||||| ||||||| ||||||||| |||||||| | ||||| |||||||||||| | ||||| | || ||||||||||||| |
|
|
| T |
24874356 |
ctgcaaattttgtaaggaactgatggttgtaggaatgttgcttgaaatttgatttcttgatagatctaatattacaagttctatcaaattcccaat |
24874261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 22899798 - 22899553
Alignment:
| Q |
13 |
catattttgggacaagtccaaggaggtcaagctcaccatttcaccaagtgatgatggaattgatccattcagtttgttatgcgctaatgataggttttgc |
112 |
Q |
| |
|
||||||||||||||||||||| ||| |||| | | ||||||||||||||||| |||||| ||||| || ||||||||| ||||| || || |||||| |
|
|
| T |
22899798 |
catattttgggacaagtccaaagagaacaagttaatcatttcaccaagtgatgtgggaatttctccatacaatttgttatgagctaaggacagattttgc |
22899699 |
T |
|
| Q |
113 |
aaagttactaaggaactaatggttgaaggaatgtttcttgaaatattatttcctgatagatctaaaactacaattgctctcaaattcccaatctcagatg |
212 |
Q |
| |
|
||| || ||||||||| |||| || ||| ||||| ||||| |||| ||||| ||||| ||||| | || ||||||| | ||||| ||||||||| || |
|
|
| T |
22899698 |
aaatttcttaaggaactgatggatgtaggtatgttgcttgatatatgatttctagataggtctaatagtataattgctttgaaatttccaatctcaagtg |
22899599 |
T |
|
| Q |
213 |
gaagattcccaatgaaggcattataagacaaatctacctctaagat |
258 |
Q |
| |
|
||| ||| |||||||| |||||| | ||||||||||| | |||||| |
|
|
| T |
22899598 |
gaatattaccaatgaaagcattagaggacaaatctacttgtaagat |
22899553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 25312071 - 25312265
Alignment:
| Q |
13 |
catattttgggacaagtccaaggaggtcaagctcaccatttcaccaagtgatgatggaattgatccattcagtttgttatgcgctaatgataggttttgc |
112 |
Q |
| |
|
||||||||| ||||||||||| ||| ||||||| | |||| || ||||||| |||||||| ||||||| ||| ||||| ||||| || || || ||| |
|
|
| T |
25312071 |
catattttgagacaagtccaaagagatcaagcttaacattccattcagtgatgcgggaattgacccattcaatttattatgagctaaggagagattctgc |
25312170 |
T |
|
| Q |
113 |
aaagttactaaggaactaatggttgaaggaatgtttcttgaaatattatttcctgatagatctaaaactacaattgctctcaaattcccaatctc |
207 |
Q |
| |
|
||| || ||||||||| ||||||| ||||||||| |||||||| | ||||| |||||||||||| | ||||| | ||||||||||||||||||| |
|
|
| T |
25312171 |
aaattttgtaaggaactgatggttgtaggaatgttgcttgaaatttgatttcttgatagatctaatattacaagttctctcaaattcccaatctc |
25312265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 25342052 - 25342243
Alignment:
| Q |
13 |
catattttgggacaagtccaaggaggtcaagctcaccatttcaccaagtgatgatggaattgatccattcagtttgttatgcgctaatgataggttttgc |
112 |
Q |
| |
|
||||||||| ||||||||||| ||| ||||||| |||||| || ||||||| |||||||| ||||||| ||| ||||| ||||| || || || ||| |
|
|
| T |
25342052 |
catattttgagacaagtccaaagagatcaagcttaccattccattcagtgatgcgggaattgacccattcaatttattatgagctaaggagagattctgc |
25342151 |
T |
|
| Q |
113 |
aaagttactaaggaactaatggttgaaggaatgtttcttgaaatattatttcctgatagatctaaaactacaattgctctcaaattcccaat |
204 |
Q |
| |
|
||| || ||||||||| ||||||| |||||||| |||||||| | ||||| |||||||||||| | ||||| | |||||||||||||||| |
|
|
| T |
25342152 |
aaattttgtaaggaactgatggttgttggaatgttgcttgaaatttgatttcttgatagatctaatattacaagttctctcaaattcccaat |
25342243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 23259257 - 23259455
Alignment:
| Q |
9 |
ttagcatattttgggacaagtccaaggaggtcaagctcaccatttcaccaagtgatgatggaattgatccattcagtttgttatgcgctaatgataggtt |
108 |
Q |
| |
|
|||||||||||| ||||| ||| ||||| ||||||| | ||| | ||||||||||| |||||||||||||| || | || || ||||| || || || |
|
|
| T |
23259257 |
ttagcatattttcggacatgtctaaggatatcaagcttatcatgttaccaagtgatgtgggaattgatccatttagcatattgtgtgctaaggagagatt |
23259356 |
T |
|
| Q |
109 |
ttgcaaagttactaaggaactaatggttgaaggaatgtttcttgaaatattatttcctgatagatctaaaactacaattgctctcaaattcccaatctc |
207 |
Q |
| |
|
||||||||| || ||||| |||| | |||||||| |||||||| | ||||| ||||||||| | | || ||||||| ||| |||||||||||| |
|
|
| T |
23259357 |
ttgcaaagtatttagcgaactgatggacgttggaatgttgcttgaaatttgatttcttgatagatcgagtattataattgctttcagattcccaatctc |
23259455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 16032 - 15787
Alignment:
| Q |
13 |
catattttgggacaagtccaaggaggtcaagctcaccatttcaccaagtgatgatggaattgatccattcagtttgttatgcgctaatgataggttttgc |
112 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| || || ||| |
|
|
| T |
16032 |
catattctgagacaagtccaaggaggtcaagctcaacatttcaccaagtgatgatggaattgattcattcagtttgttatttgctaaggagagagtttct |
15933 |
T |
|
| Q |
113 |
aaagttactaaggaactaatggttgaaggaatgtttcttgaaatattatttcctgatagatctaaaactacaattgctctcaaattcccaatctcagatg |
212 |
Q |
| |
|
||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| | |
|
|
| T |
15932 |
aaagtcttcaataaaccaatggttgaaggaatgtttcttgaaatattatttcctgatagatctaaagctataattgctctcaaattcccaatctcaggcg |
15833 |
T |
|
| Q |
213 |
gaagattcccaatgaaggcattataagacaaatctacctctaagat |
258 |
Q |
| |
|
||||||| ||||||||||||||| | |||||||||| ||||||||| |
|
|
| T |
15832 |
gaagattaccaatgaaggcattagaggacaaatctagctctaagat |
15787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 49553 - 49309
Alignment:
| Q |
13 |
catattttgggacaagtccaaggaggtcaagctcaccatttcaccaagtgatgatggaattgatccattcagtttgttatgcgctaatgataggttttgc |
112 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||| |||||| |||| |||||||| || | ||| |
|
|
| T |
49553 |
catattttgggacaagtccaaggagaccaagcttaccatttcaccaagtgatgtgggaattgatccatacagtttattatctgctaatgagagcatctgc |
49454 |
T |
|
| Q |
113 |
aaagttactaaggaactaatggttgaaggaatgtttcttgaaatattatttcctgatagatctaaaactacaattgctctcaaattcccaatctcagatg |
212 |
Q |
| |
|
|| ||| ||||||| | ||||||| |||||||| |||||||| | ||||| |||||| ||||| | || ||||||||||||||| |||||||||| || |
|
|
| T |
49453 |
aatgtttgtaaggaattgatggttgttggaatgtt-cttgaaatctgatttcttgataggtctaatagtataattgctctcaaattgccaatctcaggtg |
49355 |
T |
|
| Q |
213 |
gaagattcccaatgaaggcattataagacaaatctacctctaagat |
258 |
Q |
| |
|
||||||| ||||||||||||||| | |||||||||| ||||||||| |
|
|
| T |
49354 |
gaagattaccaatgaaggcattagaggacaaatctatctctaagat |
49309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 204
Target Start/End: Complemental strand, 35964 - 35881
Alignment:
| Q |
121 |
taaggaactaatggttgaaggaatgtttcttgaaatattatttcctgatagatctaaaactacaattgctctcaaattcccaat |
204 |
Q |
| |
|
||||||||| ||||||| ||||||||| |||||||| | ||||| |||||||||||| | ||||| | |||||||||||||||| |
|
|
| T |
35964 |
taaggaactgatggttgtaggaatgttgcttgaaatttgatttcttgatagatctaatattacaagttctctcaaattcccaat |
35881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1415 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: scaffold1415
Description:
Target: scaffold1415; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 108 - 353
Alignment:
| Q |
13 |
catattttgggacaagtccaaggaggtcaagctcaccatttcaccaagtgatgatggaattgatccattcagtttgttatgcgctaatgataggttttgc |
112 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||| | |||||||| |||||||||||||||||||| |||| ||||| || || || ||| |
|
|
| T |
108 |
catattttgggacaagtccaaggagatcaagcttaccatttgagcaagtgatttgggaattgatccattcagtttattatctgctaaggagagattctgc |
207 |
T |
|
| Q |
113 |
aaagttactaaggaactaatggttgaaggaatgtttcttgaaatattatttcctgatagatctaaaactacaattgctctcaaattcccaatctcagatg |
212 |
Q |
| |
|
|| ||| ||||||||| ||||||| |||||||| |||||||| | ||||| |||||| ||||| | || |||||||||||||||||||||||||| || |
|
|
| T |
208 |
aatgtttgtaaggaactgatggttgttggaatgttgcttgaaatctgatttcttgataggtctaatagtataattgctctcaaattcccaatctcagttg |
307 |
T |
|
| Q |
213 |
gaagattcccaatgaaggcattataagacaaatctacctctaagat |
258 |
Q |
| |
|
||||||| ||||||||||||||| | |||||||||| ||||||||| |
|
|
| T |
308 |
gaagattaccaatgaaggcattagaggacaaatctagctctaagat |
353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0830 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0830
Description:
Target: scaffold0830; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 3525 - 3276
Alignment:
| Q |
9 |
ttagcatattttgggacaagtccaaggaggtcaagctcaccatttcaccaagtgatgatggaattgatccattcagtttgttatgcgctaatgataggtt |
108 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||| ||||||||| ||||||||| ||||||||||||| ||||||||||| ||||| || || || |
|
|
| T |
3525 |
ttagcatattttgagacaagtccaaggagatcaagcttaccatttcatcaagtgatgtgggaattgatccatacagtttgttatcggctaaggagagatt |
3426 |
T |
|
| Q |
109 |
ttgcaaagttactaaggaactaatggttgaaggaatgtttcttgaaatattatttcctgatagatctaaaactacaattgctctcaaattcccaatctca |
208 |
Q |
| |
|
||||||||| ||||||||| |||||| ||||||||| |||||||||| ||||| ||||||||||| | | ||||||||||||||| |||||||| |
|
|
| T |
3425 |
ctgcaaagtttttaaggaactgatggtttcaggaatgttgcttgaaatatgatttctagatagatctaataatgtaattgctctcaaatttgcaatctca |
3326 |
T |
|
| Q |
209 |
gatggaagattcccaatgaaggcattataagacaaatctacctctaagat |
258 |
Q |
| |
|
| ||||||||| ||| |||| ||||| | ||||||| || || |||||| |
|
|
| T |
3325 |
ggtggaagattaccactgaaaccattagaggacaaatttaactttaagat |
3276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 10324916 - 10325122
Alignment:
| Q |
13 |
catattttgggacaagtccaaggaggtcaagctcaccatttcaccaagtgatgatggaattgatccattcagtttgttatgcgctaatgataggttttgc |
112 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||| ||||||| || ||||||||||||||||||| || | ||||| || || | ||| |
|
|
| T |
10324916 |
catattttgggacaagtccaaggagatcaagcctgccatttgaccaagtaatttgggaattgatccattcagttcattttctgctaaggagagaatctgc |
10325015 |
T |
|
| Q |
113 |
aaagttactaaggaactaatggttgaaggaatgtttcttgaaatattatttcctgatagatctaaaactacaattgctctcaaattcccaatctcagatg |
212 |
Q |
| |
|
|| || | |||||| | ||||||| |||||||| |||||||||| ||||| |||||| ||||| | || |||||||||||||||| |||||| || || |
|
|
| T |
10325016 |
aatgtgattaaggagttgatggttgttggaatgttgcttgaaatatgatttcttgataggtctaacaatataattgctctcaaattctcaatctgaggtg |
10325115 |
T |
|
| Q |
213 |
gaagatt |
219 |
Q |
| |
|
||||||| |
|
|
| T |
10325116 |
gaagatt |
10325122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 14413133 - 14413208
Alignment:
| Q |
16 |
attttgggacaagtccaaggaggtcaagctcaccatttcaccaagtgatgatggaattgatccattcagtttgtta |
91 |
Q |
| |
|
|||||| |||||||||||| | | ||||| | |||||||||||||||| |||||| |||||||||| ||||||| |
|
|
| T |
14413133 |
attttgagacaagtccaagaaacttaagcttaacatttcaccaagtgattttggaatagatccattcaatttgtta |
14413208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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