View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21471_low_9 (Length: 243)

Name: NF21471_low_9

Description: NF21471

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF21471_low_9

[»] chr8 (1 HSPs)

[»] chr3 (1 HSPs)

Target: chr8 (Bit Score: 136; Significance: 5e-71; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 136; E-Value: 5e-71

Query Start/End: Original strand, 23 - 158

Target Start/End: Complemental strand, 1024671 - 1024536

Alignment:

Q	23	aggtttgctcaaatggggtgtaacatttttaaatgacacaacattttgataccgatagcacaatctttgctaccacatgcatgttaaaattaatggcgag	122	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	1024671	aggtttgctcaaatggggtgtaacatttttaaatgacacaacattttgataccgatagcacaatctttgctaccacatgcatgttaaaattaatggcgag	1024572	T

Q	123	tttggcagaaccacaatgtgttagtgtgattttggc	158	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	1024571	tttggcagaaccacaatgtgttagtgtgattttggc	1024536	T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 37; E-Value: 0.000000000005

Query Start/End: Original strand, 185 - 233

Target Start/End: Complemental strand, 29085410 - 29085362

Alignment:

Q	185	aatttgaagggaagcaacaaatgagtctacgatgggttttcttctcatt	233	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\|
T	29085410	aatttgaagggaagcaacaaatgagtctacgacggattttcctctcatt	29085362	T

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