View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21472_high_1 (Length: 612)

Name: NF21472_high_1
Description: NF21472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21472_high_1
NF21472_high_1
[»] chr4 (3 HSPs)
chr4 (26-546)||(31244188-31244708)
chr4 (39-115)||(31150813-31150889)
chr4 (368-493)||(31160040-31160165)
[»] chr6 (1 HSPs)
chr6 (27-555)||(13608198-13608728)
[»] chr8 (1 HSPs)
chr8 (27-553)||(6472920-6473446)
[»] chr5 (2 HSPs)
chr5 (143-236)||(17599750-17599843)
chr5 (510-547)||(17599891-17599928)
[»] chr7 (2 HSPs)
chr7 (143-247)||(14723996-14724100)
chr7 (510-547)||(14723922-14723959)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 26 - 546
Target Start/End: Complemental strand, 31244708 - 31244188
Alignment:
Q  26 tgcaaacatataaaagagtacttacttatcccttacatcccaaccagagagattggctacttgttccagtgctcctctccatctttgcacttccattaag 125  Q
    |||||||||| |||||| |||||||| |||||||||||||||||||||||| | |||||||||| | || |||||||||||||||||||||| |  |||     
T  31244708 tgcaaacatagaaaagactacttactgatcccttacatcccaaccagagagttcggctacttgtgctagggctcctctccatctttgcactttctctaaa 31244609  T
Q  126 ttttctttgtatccttcttcatgctcccgaaaggcttgttcataatcttcgctttgctttcgtacctcggatggactcacatcatagaaaataggtagaa 225  Q
    ||| ||||| ||| ||||||||| |||| |||||||| |||||||||| ||||||||||||| ||||| ||||||  |||||||||||||||||||||||    
T  31244608 tttcctttgaatctttcttcatgatccctaaaggctttttcataatctccgctttgctttcgcacctcagatggatccacatcatagaaaataggtagaa 31244509  T
Q  226 cagtttgtccttgtacttcaatgcaatcagcaatttttgcgagttcccgcaagcaccatgtggaagaagcatagtttcttgaaaagataacaatcagaat 325  Q
    || ||||||||  |||||||||||| |||||||| ||| | ||||||  ||||||||| || |||||||||||||| ||||||||||||||||||| |||    
T  31244508 caatttgtcctgttacttcaatgcattcagcaatctttactagttccttcaagcaccacgttgaagaagcatagttccttgaaaagataacaatcaaaat 31244409  T
Q  326 acgagaaccttcaatagcttgtagaagctcagatgatatattttcacctttattgagatttgtatcatccctgaaggcaacaattccatttttatgaaaa 425  Q
    ||| || |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||| || |||||||| | |    
T  31244408 acgggatccttcaatagcttgtagaagctcagatgatatattttcccctttcttgagctttgtatcatccctgaaggtaacaatgccttttttatggaga 31244309  T
Q  426 gcgccaaaaagataatcggtaaaattgttgcgtgtgtcttcgccgcgaaagctcacaaacacatcatatttccatttcatcttaggtgaagagacacttt 525  Q
    | ||||||||| | ||| || |||||||||||||||||  | || | ||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  31244308 gtgccaaaaaggtgatcagtgaaattgttgcgtgtgtcgccacctctaaagctcacaaacacatcatatttccatttcatcttaggtgaagagatacttc 31244209  T
Q  526 ggatgctactactagccattg 546  Q
    |||||||| ||| ||||||||    
T  31244208 ggatgctattacaagccattg 31244188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 31150813 - 31150889
Alignment:
Q  39 aagagtacttacttatcccttacatcccaaccagagagattggctacttgttccagtgctcctctccatctttgcac 115  Q
    |||| |||||||||||  | ||||||||| |||||||||||||| ||||||  ||||||| | ||||||||||||||    
T  31150813 aagattacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcac 31150889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 368 - 493
Target Start/End: Original strand, 31160040 - 31160165
Alignment:
Q  368 ttcacctttattgagatttgtatcatccctgaaggcaacaattccatttttatgaaaagcgccaaaaagataatcggtaaaattgttgcgtgtgtcttcg 467  Q
    ||||||||| || || || | |||||||||||| ||||| || || ||| | ||||  ||  ||||||||| ||||| |||||||||| ||||||||| |    
T  31160040 ttcacctttcttcaggttagaatcatccctgaatgcaacgatgccttttctttgaagggcagcaaaaagatgatcggcaaaattgttgtgtgtgtcttgg 31160139  T
Q  468 ccgcgaaagctcacaaacacatcata 493  Q
    || | |||||||||||| || |||||    
T  31160140 cctctaaagctcacaaaaacgtcata 31160165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 27 - 555
Target Start/End: Complemental strand, 13608728 - 13608198
Alignment:
Q  27 gcaaacatataaaagagtacttacttatcccttacatcccaaccagagagattggctacttgttccagtgctcctctccatctttgcacttccattaagt 126  Q
    ||||||| | |||| | ||||||||||||| | | ||||||||||||||||||||||||||||   || ||||| ||||||||||||||||||  |||||    
T  13608728 gcaaacagagaaaatactacttacttatccttcatatcccaaccagagagattggctacttgtgttagggctcccctccatctttgcacttcctctaagt 13608629  T
Q  127 tttctttgtatccttcttcatgctcccgaaaggcttgttcataatcttcgctttgctttcgtacctcggatggactcacatcatagaaaataggtagaac 226  Q
    |||||||| ||| |||||||||||   ||||||||| |||||||||| ||||||||||||||||| | ||||||||| ||||||||||||||||||||||    
T  13608628 tttctttgaatctttcttcatgcttttgaaaggctttttcataatctccgctttgctttcgtaccgcagatggactcgcatcatagaaaataggtagaac 13608529  T
Q  227 agtttgtccttgtacttcaatgcaatcagcaatttttgcgagttcccgcaagcaccatgtggaagaagcatagtttcttgaaaagataacaatcagaata 326  Q
    ||||||||||  |||||||| | | |||||||||||||| |||||  | |||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  13608528 agtttgtcctgatacttcaaagtattcagcaatttttgccagttcttgtaagcaccatgtggaagaagcatagtttcttgagaagataacaatcaaaata 13608429  T
Q  327 cgagaaccttcaatagcttgtagaagctcagatgatatattttcacctttattgagatttgtatcatccctgaaggcaacaattccatttttatgaaaag 426  Q
     | || |||||||| ||||||  |||||  |||||||||| ||| ||||| || || ||||||||||| ||||| ||||||||  |||||||||| | ||    
T  13608428 tgggatccttcaatggcttgttcaagcttggatgatatatgttcccctttttttaggtttgtatcatctctgaatgcaacaatgtcatttttatg-agag 13608330  T
Q  427 cgccaaaaagataatcggtaaaattgttgcgtgtgtcttcgccgcgaaagctcacaaacacatcatatttccatttca---tcttaggtgaagagacact 523  Q
    |||||||||||| ||| || ||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||   || ||| |||||||||| |    
T  13608329 cgccaaaaagatgatcagtgaaattgttgcgcgtgtcttcgccacggaagctcacaaacacatcatatttccatttcatcctcctagatgaagagacagt 13608230  T
Q  524 ttggatgctactactagccattgaaattgtaa 555  Q
    ||||||||||||||||||||||||||||||||    
T  13608229 ttggatgctactactagccattgaaattgtaa 13608198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 27 - 553
Target Start/End: Original strand, 6472920 - 6473446
Alignment:
Q  27 gcaaacatataaaagagtacttacttatcccttacatcccaaccagagagattggctacttgttccagtgctcctctccatctttgcacttccattaagt 126  Q
    ||||||||| |||| | ||||||||||||| ||| ||||||||||||||||||||||||||||   || ||||| ||||||||||||||| ||  |||||    
T  6472920 gcaaacatagaaaatactacttacttatcctttatatcccaaccagagagattggctacttgtgttagggctcccctccatctttgcactgcctctaagt 6473019  T
Q  127 tttctttgtatccttcttcatgctcccgaaaggcttgttcataatcttcgctttgctttcgtacctcggatggactcacatcatagaaaataggtagaac 226  Q
    || ||||| ||| |||| |||||||  |||||| || |||||||||| || |||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  6473020 ttcctttgaatctttctccatgctcaagaaagggtttttcataatctccggtttgttttcgtacctcagatggactcacatcatagaaaataggtagaac 6473119  T
Q  227 agtttgtccttgtacttcaatgcaatcagcaatttttgcgagttcccgcaagcaccatgtggaagaagcatagtttcttgaaaagataacaatcagaata 326  Q
    ||||||||||||||| |  |||||||||||||| ||| | | |||  ||||||||||||||||||||||||||||| |||| || || |||||||  |||    
T  6473120 agtttgtccttgtacatggatgcaatcagcaatatttaccaattcttgcaagcaccatgtggaagaagcatagttttttgagaaaattacaatcaagata 6473219  T
Q  327 cgagaaccttcaatagcttgtagaagctcagatgatatattttcacctttattgagatttgtatcatccctgaaggcaacaattccatttttatgaaaag 426  Q
     ||||  |||  ||||||||||| |||||||||||||| ||| | ||||| || || ||| |||||||||||||| ||||||| | ||||||||||| ||    
T  6473220 tgagattcttttatagcttgtaggagctcagatgatatgtttccccctttttttaggtttatatcatccctgaagacaacaatgcgatttttatgaagag 6473319  T
Q  427 cgccaaaaagataatcggtaaaattgttgcgtgtgtcttcgccgcgaaagctcacaaacacatcatatttccatttcatcttaggtgaagagacactttg 526  Q
    | |||||||||| ||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| || ||  |||||||||||||||    
T  6473320 caccaaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcatatttccatttcctcctatttgaagagacactttg 6473419  T
Q  527 gatgctactactagccattgaaattgt 553  Q
    ||||||||||| || |||| |||||||    
T  6473420 gatgctactacgagtcattcaaattgt 6473446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 17599750 - 17599843
Alignment:
Q  143 ttcatgctcccgaaaggcttgttcataatcttcgctttgctttcgtacctcggatggactcacatcatagaaaataggtagaacagtttgtcct 236  Q
    |||||||| | |||| |||| |||||||| | || ||| |||||||||||| ||||||||| | ||||||||||||||||||||||||||||||    
T  17599750 ttcatgcttctgaaaagctttttcataatttccgtttttctttcgtacctcagatggactcccgtcatagaaaataggtagaacagtttgtcct 17599843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 510 - 547
Target Start/End: Original strand, 17599891 - 17599928
Alignment:
Q  510 ggtgaagagacactttggatgctactactagccattga 547  Q
    ||||||||||||||||||||||||||||||||||||||    
T  17599891 ggtgaagagacactttggatgctactactagccattga 17599928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 143 - 247
Target Start/End: Complemental strand, 14724100 - 14723996
Alignment:
Q  143 ttcatgctcccgaaaggcttgttcataatcttcgctttgctttcgtacctcggatggactcacatcatagaaaataggtagaacagtttgtccttgtact 242  Q
    |||||||| | |||| |||| |||||||| | || ||| |||||||||||| ||||||||| | ||||||||||||||||||||| ||||||||  ||||    
T  14724100 ttcatgcttctgaaaagctttttcataatttccgtttttctttcgtacctcagatggactcccgtcatagaaaataggtagaacaatttgtcctgatact 14724001  T
Q  243 tcaat 247  Q
    |||||    
T  14724000 tcaat 14723996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 547
Target Start/End: Complemental strand, 14723959 - 14723922
Alignment:
Q  510 ggtgaagagacactttggatgctactactagccattga 547  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  14723959 ggtgaagagacactttggatgctactattagccattga 14723922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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