View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21472_high_13 (Length: 309)
Name: NF21472_high_13
Description: NF21472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21472_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 290
Target Start/End: Original strand, 39689231 - 39689522
Alignment:
| Q |
7 |
tcgaagaaaatagataaaattccgtttgtttcggaatgtgaatcga------acaagtggtgtatctccctctgtctgcatcatttaaacannnnnnnat |
100 |
Q |
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| T |
39689231 |
tcgaacaaaatagataaaattccgtttgtttcagaatgtgaatcgagaatacacaagtggtgtatctccctctgtctgcatcatttaaacatttttttat |
39689330 |
T |
|
| Q |
101 |
ttaagaaga--tagtgtcaattcaaaagcgtgcatgtacccaacacagattacacacacacaagaagaaaagcacgatatccgcgtgttattttactgtg |
198 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39689331 |
ttaagaagagatagtgtcaattcaaaagcgtgcatgtacccaacacagattacacacacacaagaagaaaagcacgatatccgcgtgttattttactgtg |
39689430 |
T |
|
| Q |
199 |
catttgtgacgcggtcctaactcataaccctatacgagagtggtccgctgttttagcttagcatttgcatgatgagtgatcagcaatccttg |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39689431 |
catttgtgacgcggtcctaactcataaccctatacgagagtggtccgctgttttagcttagcatttgcatgatgagtgatcagcaatccttg |
39689522 |
T |
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