View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21472_high_3 (Length: 541)
Name: NF21472_high_3
Description: NF21472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21472_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 11 - 523
Target Start/End: Complemental strand, 43561999 - 43561487
Alignment:
| Q |
11 |
cagagacaaagaaacagagcaaggtgaagaaaaacagagactgcaacagccacccggtttatcacggcgttcgaatgcgaagctggggaaaatgggtatc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43561999 |
cagagacaaagaaacagagcaaggtgaagaaaaacagagactgcaacagccacccggtttatcacggcgttcgaatgcgaagctggggaaaatgggtatc |
43561900 |
T |
|
| Q |
111 |
agaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatgttgctgctttgagtata |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43561899 |
ggaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatgttgctgctttgagtata |
43561800 |
T |
|
| Q |
211 |
aagggtcattcagcaattctgaacttccccgaaatagcgcacatgcttccaagaccaacaacgttgtctccacgtgacattcaagttgcagctgcagaag |
310 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43561799 |
aagggtcattcagcaattcttaacttccccgaaatagcgcacatgcttccaagaccaacaacgttgtctccacgtgacattcaagttgcagctgcagaag |
43561700 |
T |
|
| Q |
311 |
ctgctgccatggtggaatttgattctcaaatattgcgctcaacaatctcactcagctctgaagtctctgactcaccttcatattcatcagagtcttcaga |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43561699 |
ctgctgccatggtggaatttgattctcaaatattgcgctcaacaatctcactcagctctgaagtctctgactcaccttcatattcatcagagtctacaga |
43561600 |
T |
|
| Q |
411 |
gcttagtgagattgttgagcttcctaatatagaagagagttataactcggttgaggtgagaagtgagtttatgttgattgactcggttgaaagttggttg |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43561599 |
gcttagtgagattgttgagcttcctaatatagaagagagttataactcggttgaggtgagaagtgagtttatgttgattgactcggttgaaagttggttg |
43561500 |
T |
|
| Q |
511 |
tatccgtcagtag |
523 |
Q |
| |
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||||||||||||| |
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| T |
43561499 |
tatccgtcagtag |
43561487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 36077810 - 36077744
Alignment:
| Q |
133 |
aaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatgttgctg |
199 |
Q |
| |
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|||||| |||| ||||| ||||||||| |||| || ||||||||||||| ||| |||||||| |||| |
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| T |
36077810 |
aaatcaagaatatggctaggaacttaccctacaccagaaatggcagctatagcacatgatgtagctg |
36077744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 88 - 203
Target Start/End: Original strand, 4268648 - 4268763
Alignment:
| Q |
88 |
cgaagctggggaaaatgggtatcagaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgc |
187 |
Q |
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|||| |||||||||||||||||| |||||||||||||| |||||||||||| |||||||||| ||||| | | | || || ||||||||||||||||| | |
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| T |
4268648 |
cgaaactggggaaaatgggtatctgaaatccgcgaaccacgcaaaaaatcaagaatctggctaggaacattctcaacaccagaaatggcagctagagcac |
4268747 |
T |
|
| Q |
188 |
atgatgttgctgcttt |
203 |
Q |
| |
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| ||||| || ||||| |
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| T |
4268748 |
acgatgtagcagcttt |
4268763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 130 - 225
Target Start/End: Complemental strand, 505615 - 505520
Alignment:
| Q |
130 |
aaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatgttgctgctttgagtataaagggtcattcagca |
225 |
Q |
| |
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||||||||| |||| ||||||||||| ||| |||| ||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |
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| T |
505615 |
aaaaaatcaagaatatggcttggaacataccctacagctgaaatggcagctagagcacatgatgtagctgctttagctataaagggtcattcagca |
505520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 94 - 224
Target Start/End: Complemental strand, 16357926 - 16357796
Alignment:
| Q |
94 |
tggggaaaatgggtatcagaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatg |
193 |
Q |
| |
|
||||||||||||||||| ||||| || || || | || || ||| |||| ||||||||||| ||| |||| ||||||||||||||||||| ||||||| |
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| T |
16357926 |
tggggaaaatgggtatctgaaattcgtgagccaagaaagaagtcaagaatatggcttggaacataccctacagctgaaatggcagctagagctcatgatg |
16357827 |
T |
|
| Q |
194 |
ttgctgctttgagtataaagggtcattcagc |
224 |
Q |
| |
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| |||||||| ||||||||||||||||| |
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| T |
16357826 |
tagctgctttagccataaagggtcattcagc |
16357796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 176
Target Start/End: Original strand, 33589193 - 33589286
Alignment:
| Q |
83 |
gaatgcgaagctggggaaaatgggtatcagaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggc |
176 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| ||||| || || ||| ||||||||||||||||| || ||||| |||||||||| |
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| T |
33589193 |
gaatgcgaacatggggaaaatgggtatccgaaatccgtgaaccacgaaagaaaagtcgaatctggcttggaacatatgctacggctgaaatggc |
33589286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 179
Target Start/End: Original strand, 33602312 - 33602408
Alignment:
| Q |
83 |
gaatgcgaagctggggaaaatgggtatcagaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagc |
179 |
Q |
| |
|
||||||||| |||||||||||||| || |||||||| ||||| || || ||| ||||||||||| ||||| | ||| || ||||||||||||| |
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| T |
33602312 |
gaatgcgaacatggggaaaatgggtttctgaaatccgagaaccacgaaagaaaaaccgaatctggctaggaacattcgcaaccgctgaaatggcagc |
33602408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 200
Target Start/End: Original strand, 71010 - 71116
Alignment:
| Q |
94 |
tggggaaaatgggtatcagaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatg |
193 |
Q |
| |
|
|||||||| ||||| || ||||||||||| || || || ||||| || || ||||| || |||| | | ||| |||||||||| |||||||||||||| | |
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| T |
71010 |
tggggaaagtgggtgtccgaaatccgcgagccacgtaagaaatcgcggatttggctaggcactttccccactgctgaaatggctgctagagcgcatgacg |
71109 |
T |
|
| Q |
194 |
ttgctgc |
200 |
Q |
| |
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|||||| |
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|
| T |
71110 |
ctgctgc |
71116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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