View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21472_high_4 (Length: 535)

Name: NF21472_high_4
Description: NF21472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21472_high_4
NF21472_high_4
[»] chr8 (2 HSPs)
chr8 (13-59)||(4582204-4582250)
chr8 (8-60)||(4839796-4839848)
[»] scaffold0044 (1 HSPs)
scaffold0044 (8-59)||(81800-81851)
[»] chr2 (7 HSPs)
chr2 (8-57)||(26903347-26903396)
chr2 (14-59)||(42249475-42249520)
chr2 (8-59)||(24285696-24285747)
chr2 (8-59)||(24292372-24292423)
chr2 (8-59)||(34070618-34070669)
chr2 (21-59)||(20917520-20917558)
chr2 (20-64)||(14582920-14582964)
[»] scaffold0991 (1 HSPs)
scaffold0991 (8-59)||(387-438)
[»] scaffold0015 (1 HSPs)
scaffold0015 (8-59)||(192528-192579)
[»] chr3 (8 HSPs)
chr3 (8-59)||(2211239-2211290)
chr3 (8-59)||(8197710-8197761)
chr3 (13-59)||(30495-30541)
chr3 (21-59)||(17919199-17919237)
chr3 (20-61)||(50824350-50824391)
chr3 (20-61)||(50851469-50851510)
chr3 (20-48)||(16816230-16816258)
chr3 (8-48)||(18349567-18349607)
[»] chr7 (1 HSPs)
chr7 (21-59)||(30244775-30244813)
[»] chr1 (2 HSPs)
chr1 (14-64)||(21498918-21498968)
chr1 (8-64)||(52100012-52100068)
[»] chr4 (3 HSPs)
chr4 (20-64)||(27343717-27343761)
chr4 (20-59)||(10638328-10638367)
chr4 (239-275)||(47686830-47686866)
[»] scaffold0863 (1 HSPs)
scaffold0863 (8-59)||(386-437)
[»] scaffold0389 (1 HSPs)
scaffold0389 (8-59)||(416-467)
[»] scaffold0170 (1 HSPs)
scaffold0170 (20-59)||(7216-7255)
[»] scaffold0083 (1 HSPs)
scaffold0083 (20-59)||(15813-15852)
[»] scaffold0048 (1 HSPs)
scaffold0048 (20-62)||(7655-7697)
[»] chr6 (5 HSPs)
chr6 (21-59)||(13490193-13490231)
chr6 (20-61)||(5489145-5489186)
chr6 (20-60)||(5004060-5004100)
chr6 (20-60)||(25550294-25550334)
chr6 (20-60)||(35091702-35091742)
[»] chr5 (1 HSPs)
chr5 (20-66)||(20398661-20398707)
[»] scaffold0027 (1 HSPs)
scaffold0027 (26-59)||(65710-65743)


Alignment Details
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 4582250 - 4582204
Alignment:
Q  13 aaaatatgtaaaaatagagaaaagtggtcaaaatttaaggtatgaca 59  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  4582250 aaaatgtgtaaaaatagagaaaagtggtcaaaatttaaggtatgaca 4582204  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 4839796 - 4839848
Alignment:
Q  8 cgaagaaaatatgtaaaaatagagaaaagtggtcaaaatttaaggtatgacat 60  Q
    |||| |||||| |||| |||||||||||| |||||||||||  ||||||||||    
T  4839796 cgaataaaataggtaagaatagagaaaagcggtcaaaatttggggtatgacat 4839848  T

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Target: scaffold0044 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 81800 - 81851
Alignment:
Q  8 cgaagaaaatatgtaaaaatagagaaaagtggtcaaaatttaaggtatgaca 59  Q
    |||| ||||| ||||||||||||||||||||||||||||||| |||||||||    
T  81800 cgaacaaaatgtgtaaaaatagagaaaagtggtcaaaatttagggtatgaca 81851  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 26903347 - 26903396
Alignment:
Q  8 cgaagaaaatatgtaaaaatagagaaaagtggtcaaaatttaaggtatga 57  Q
    |||| ||||| ||||||||||||||||||||||||||||||| |||||||    
T  26903347 cgaacaaaatgtgtaaaaatagagaaaagtggtcaaaatttagggtatga 26903396  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 42249475 - 42249520
Alignment:
Q  14 aaatatgtaaaaatagagaaaagtggtcaaaatttaaggtatgaca 59  Q
    |||| ||||||||||||||||||||||||||||||  |||||||||    
T  42249475 aaatgtgtaaaaatagagaaaagtggtcaaaatttggggtatgaca 42249520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 24285747 - 24285696
Alignment:
Q  8 cgaagaaaatatgtaaaaatagagaaaagtggtcaaaatttaaggtatgaca 59  Q
    |||| ||||| |||||||||| |||||||||||||||||||  |||||||||    
T  24285747 cgaacaaaatgtgtaaaaataaagaaaagtggtcaaaatttggggtatgaca 24285696  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 24292423 - 24292372
Alignment:
Q  8 cgaagaaaatatgtaaaaatagagaaaagtggtcaaaatttaaggtatgaca 59  Q
    |||| ||||| |||||||||| |||||||||||||||||||  |||||||||    
T  24292423 cgaacaaaatgtgtaaaaataaagaaaagtggtcaaaatttggggtatgaca 24292372  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 34070618 - 34070669
Alignment:
Q  8 cgaagaaaatatgtaaaaatagagaaaagtggtcaaaatttaaggtatgaca 59  Q
    |||| ||||| |||||||||||||||||||| |||||||||  |||||||||    
T  34070618 cgaacaaaatgtgtaaaaatagagaaaagtgatcaaaatttggggtatgaca 34070669  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 20917558 - 20917520
Alignment:
Q  21 taaaaatagagaaaagtggtcaaaatttaaggtatgaca 59  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  20917558 taaaaatagagaaaagtggtcaaaatttagagtatgaca 20917520  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 14582964 - 14582920
Alignment:
Q  20 gtaaaaatagagaaaagtggtcaaaatttaaggtatgacattatc 64  Q
    |||| ||||||||||||||||||||||||  ||||||||| ||||    
T  14582964 gtaagaatagagaaaagtggtcaaaatttggggtatgacaatatc 14582920  T

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Target: scaffold0991 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 387 - 438
Alignment:
Q  8 cgaagaaaatatgtaaaaatagagaaaagtggtcaaaatttaaggtatgaca 59  Q
    |||| ||||| ||||||||||||||||||||||||||||||  |||||||||    
T  387 cgaacaaaatgtgtaaaaatagagaaaagtggtcaaaatttggggtatgaca 438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 192579 - 192528
Alignment:
Q  8 cgaagaaaatatgtaaaaatagagaaaagtggtcaaaatttaaggtatgaca 59  Q
    |||| ||||| ||||||||||||||||||||||||||||||  |||||||||    
T  192579 cgaacaaaatctgtaaaaatagagaaaagtggtcaaaatttggggtatgaca 192528  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 2211290 - 2211239
Alignment:
Q  8 cgaagaaaatatgtaaaaatagagaaaagtggtcaaaatttaaggtatgaca 59  Q
    |||| |||||| |||| ||||||||||||||||||||||||| |||||||||    
T  2211290 cgaataaaataggtaagaatagagaaaagtggtcaaaatttagggtatgaca 2211239  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 8197710 - 8197761
Alignment:
Q  8 cgaagaaaatatgtaaaaatagagaaaagtggtcaaaatttaaggtatgaca 59  Q
    |||| ||||| ||||||||||||||||||||||||||||||  |||||||||    
T  8197710 cgaacaaaatgtgtaaaaatagagaaaagtggtcaaaatttggggtatgaca 8197761  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 30495 - 30541
Alignment:
Q  13 aaaatatgtaaaaatagagaaaagtggtcaaaatttaaggtatgaca 59  Q
    ||||| ||||||||||||||||||||||||||||||  |||||||||    
T  30495 aaaatgtgtaaaaatagagaaaagtggtcaaaatttggggtatgaca 30541  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 17919237 - 17919199
Alignment:
Q  21 taaaaatagagaaaagtggtcaaaatttaaggtatgaca 59  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  17919237 taaaaatagagaaaagtggtcaaaatttggggtatgaca 17919199  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 50824391 - 50824350
Alignment:
Q  20 gtaaaaatagagaaaagtggtcaaaatttaaggtatgacatt 61  Q
    |||| ||||||||||||||||||||||||  |||||||||||    
T  50824391 gtaagaatagagaaaagtggtcaaaatttggggtatgacatt 50824350  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 50851469 - 50851510
Alignment:
Q  20 gtaaaaatagagaaaagtggtcaaaatttaaggtatgacatt 61  Q
    |||| ||||||||||||||||||||||||  |||||||||||    
T  50851469 gtaagaatagagaaaagtggtcaaaatttggggtatgacatt 50851510  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 16816230 - 16816258
Alignment:
Q  20 gtaaaaatagagaaaagtggtcaaaattt 48  Q
    |||||||||||||||||||||||||||||    
T  16816230 gtaaaaatagagaaaagtggtcaaaattt 16816258  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 18349607 - 18349567
Alignment:
Q  8 cgaagaaaatatgtaaaaatagagaaaagtggtcaaaattt 48  Q
    |||| ||||| ||||||||||||||||||| ||||||||||    
T  18349607 cgaataaaatgtgtaaaaatagagaaaagttgtcaaaattt 18349567  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 30244813 - 30244775
Alignment:
Q  21 taaaaatagagaaaagtggtcaaaatttaaggtatgaca 59  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  30244813 taaaaatagagaaaagtggtcaaaatttgaggtatgaca 30244775  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 21498918 - 21498968
Alignment:
Q  14 aaatatgtaaaaatagagaaaagtggtcaaaatttaaggtatgacattatc 64  Q
    |||| ||||||||||||||||||||||||||||||  ||||||||| ||||    
T  21498918 aaatgtgtaaaaatagagaaaagtggtcaaaatttggggtatgacactatc 21498968  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 52100068 - 52100012
Alignment:
Q  8 cgaagaaaatatgtaaaaatagagaaaagtggtcaaaatttaaggtatgacattatc 64  Q
    |||| ||||| |||||||| |||||||| ||||||||||||| | ||||||| ||||    
T  52100068 cgaacaaaatgtgtaaaaacagagaaaaatggtcaaaatttaggatatgacactatc 52100012  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 27343717 - 27343761
Alignment:
Q  20 gtaaaaatagagaaaagtggtcaaaatttaaggtatgacattatc 64  Q
    |||||||||||||||||||||||||||||  ||||||||| ||||    
T  27343717 gtaaaaatagagaaaagtggtcaaaatttggggtatgacaatatc 27343761  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 10638367 - 10638328
Alignment:
Q  20 gtaaaaatagagaaaagtggtcaaaatttaaggtatgaca 59  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  10638367 gtaaaaatagagaaaagtggtcaaaatttggggtatgaca 10638328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 47686830 - 47686866
Alignment:
Q  239 attcatacacaatctttcaaaatcctcaagacttttt 275  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  47686830 attcatccacaatctttcaaaatcttcaagacttttt 47686866  T

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Target: scaffold0863 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 386 - 437
Alignment:
Q  8 cgaagaaaatatgtaaaaatagagaaaagtggtcaaaatttaaggtatgaca 59  Q
    |||| ||||| |||||||||| |||||||||||||||||||  |||||||||    
T  386 cgaacaaaatgtgtaaaaataaagaaaagtggtcaaaatttggggtatgaca 437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 467 - 416
Alignment:
Q  8 cgaagaaaatatgtaaaaatagagaaaagtggtcaaaatttaaggtatgaca 59  Q
    |||| ||||| ||||||| || |||||||||||||||||||| |||||||||    
T  467 cgaacaaaatgtgtaaaattaaagaaaagtggtcaaaatttagggtatgaca 416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 7216 - 7255
Alignment:
Q  20 gtaaaaatagagaaaagtggtcaaaatttaaggtatgaca 59  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  7216 gtaaaaacagagaaaagtggtcaaaatttagggtatgaca 7255  T

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Target: scaffold0083 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 15852 - 15813
Alignment:
Q  20 gtaaaaatagagaaaagtggtcaaaatttaaggtatgaca 59  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  15852 gtaaaaatagagaaaagtggtcaaaatttggggtatgaca 15813  T

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Target: scaffold0048 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 7655 - 7697
Alignment:
Q  20 gtaaaaatagagaaaagtggtcaaaatttaaggtatgacatta 62  Q
    |||| ||||||||||||||||||||||||  ||||||||||||    
T  7655 gtaagaatagagaaaagtggtcaaaatttggggtatgacatta 7697  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 13490231 - 13490193
Alignment:
Q  21 taaaaatagagaaaagtggtcaaaatttaaggtatgaca 59  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  13490231 taaaaatagagaaaagtggtcaaaatttggggtatgaca 13490193  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 5489145 - 5489186
Alignment:
Q  20 gtaaaaatagagaaaagtggtcaaaatttaaggtatgacatt 61  Q
    |||| ||||||||||||||||||||||||  |||||||||||    
T  5489145 gtaagaatagagaaaagtggtcaaaatttggggtatgacatt 5489186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 5004100 - 5004060
Alignment:
Q  20 gtaaaaatagagaaaagtggtcaaaatttaaggtatgacat 60  Q
    |||| ||||||||||||||||||||||||  ||||||||||    
T  5004100 gtaagaatagagaaaagtggtcaaaatttggggtatgacat 5004060  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 25550334 - 25550294
Alignment:
Q  20 gtaaaaatagagaaaagtggtcaaaatttaaggtatgacat 60  Q
    |||| ||||||||||||||||||||||||  ||||||||||    
T  25550334 gtaagaatagagaaaagtggtcaaaatttggggtatgacat 25550294  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 35091702 - 35091742
Alignment:
Q  20 gtaaaaatagagaaaagtggtcaaaatttaaggtatgacat 60  Q
    |||| ||||||||||||||||||||||||  ||||||||||    
T  35091702 gtaagaatagagaaaagtggtcaaaatttggggtatgacat 35091742  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 20398661 - 20398707
Alignment:
Q  20 gtaaaaatagagaaaagtggtcaaaatttaaggtatgacattatctt 66  Q
    |||| ||||||||||||||||||||||||  ||||||||||| ||||    
T  20398661 gtaagaatagagaaaagtggtcaaaatttggggtatgacattttctt 20398707  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 65710 - 65743
Alignment:
Q  26 atagagaaaagtggtcaaaatttaaggtatgaca 59  Q
    |||||||||||||||||||||||| |||||||||    
T  65710 atagagaaaagtggtcaaaatttagggtatgaca 65743  T

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