View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21472_high_5 (Length: 501)
Name: NF21472_high_5
Description: NF21472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21472_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 13 - 482
Target Start/End: Original strand, 25741461 - 25741926
Alignment:
| Q |
13 |
aatatggaatcaagtctcattgagacactttttggcttcattgaatgttatgaaataagaatgatgaaggggattgacatagtatagtatcttcatagct |
112 |
Q |
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| T |
25741461 |
aatatggaatcaagtctcattgagacactttttggcttcattgaatgttatgaaataagaatgatgaaggggattgacatag-----tatcttcatagct |
25741555 |
T |
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| Q |
113 |
tcttgtgtattcgcgcgatgtagatgattcgcatcgatccttgtattttctgcggaacttctaacttaagataattagtttccatttctcttccttgaat |
212 |
Q |
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| T |
25741556 |
tcttgtgtattcgcgcgatgtagatgattcgcatcgatccttgtattttctgcggaacttctaacttaagataattagtttccatttctcttccttgaat |
25741655 |
T |
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| Q |
213 |
tcctaatagaatcaaagcaatattaacaggcataggctcaagagagccgtgaaaatacaatgaagtttttgttctgcactgccgtaccacaatctgtcat |
312 |
Q |
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| T |
25741656 |
tcctaatagaatcaaagcaatattaacaggcataggctcaagagagccgtgaaaatacaatgaagtttttgttctgcactgcagtaccacaatctgtcgt |
25741755 |
T |
|
| Q |
313 |
attctcatggctaaaattatggatcagatgacagaacaaacaattagggcaaaaataacttcacaag-nnnnnnnnnnnnnnnnnnnncagtagttgcaa |
411 |
Q |
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| T |
25741756 |
attctcatggctaaaattatgaatcagatgacagaacaaacaattagggcaaaaataacttcacaagaacaaaagaagtaaaaaaaaacagtagttgcaa |
25741855 |
T |
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| Q |
412 |
ggtccacaaaatatatagcttttcaattttttcagataatcttattttgtaatcttttaggaatgactgaa |
482 |
Q |
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| T |
25741856 |
ggtccacaaaatatatagcttttcaattttttcagataatcttattttgtaatcttttaggaatgactgaa |
25741926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 13 - 165
Target Start/End: Original strand, 25744995 - 25745143
Alignment:
| Q |
13 |
aatatggaatcaagtctcattgagacactttttggcttcattgaatgttatgaaa-taagaatgatgaaggggattgacatagtatagtatcttcatagc |
111 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||| ||||||||||||||| |
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| T |
25744995 |
aatatggaatcaagtcttattgagacactttttggcttcattaaatgttatgaaagtaagaatgatgaagaggattgac-----ctagtatcttcatagc |
25745089 |
T |
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| Q |
112 |
ttcttgtgtattcgcgcgatgtagatgattcgcatcgatccttgtattttctgc |
165 |
Q |
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| T |
25745090 |
ttcttgtgtgttcgcgcaatatagatgattcgtgttgatccttgtattttctgc |
25745143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 400 - 483
Target Start/End: Original strand, 25745399 - 25745481
Alignment:
| Q |
400 |
cagtagttgcaaggtccacaaaatatatagcttttcaattttttcagataatcttattttgtaatcttttaggaatgactgaat |
483 |
Q |
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| T |
25745399 |
cagtagttgcaaggtccacaaa-tatatagcttttcaattttttcagataatcttattttgtaatcttttaggaatgactgaat |
25745481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 167 - 254
Target Start/End: Original strand, 25745220 - 25745307
Alignment:
| Q |
167 |
gaacttctaacttaagataattagtttccatttctcttccttgaattcctaatagaatcaaagcaatattaacaggcataggctcaag |
254 |
Q |
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| T |
25745220 |
gaacttctaacttaagacaattagtttccatttctcttccttgtattcctaataaaatcaaagaatttttatcaagcgtaggctcaag |
25745307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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