View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21472_high_9 (Length: 382)
Name: NF21472_high_9
Description: NF21472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21472_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 7665288 - 7664938
Alignment:
| Q |
1 |
atagtagtcacatacaatgggatccaatttaccaataaaaaagttccaatactttctaacaactttaaaagttaaagaacacttcacttcgatgaaacat |
100 |
Q |
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| T |
7665288 |
atagtagtcacatacaatgggatccaatttaccaataaaaaagttccaatactttctaacaactttaaaagttaaacaacacttcacttcgatgaaacat |
7665189 |
T |
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| Q |
101 |
ccttgacaaatggtcaagcagaatct-ctaactatattcttctccaggaattatacaccaggtagcgcaactgatcatttaacaccaaatcatcaatagt |
199 |
Q |
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| T |
7665188 |
ccttgacaaatggtcaagcagaatctgctaactatattcttctccaggaattatacaccaggtagcgcaactcatca--------------atagtaagt |
7665103 |
T |
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| Q |
200 |
agtttgagaacagaaagtatccatgtgaatatacaggaggtttccatctagtcaaaagtcaaaaccaatgaccccactaaaagcaagaaaaagtgcttac |
299 |
Q |
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| T |
7665102 |
agtttgagaacagaaagtatccacgtgaatatacaggaggtttccatctagtcaaaagtcaaaaccaatgaccccactaaaagcaagaaaaagtgcttac |
7665003 |
T |
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| Q |
300 |
aaaataacaataataactgcacaaaacatgaaccactgatgcattctacatgattaaaatgtttg |
364 |
Q |
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| T |
7665002 |
aaaataacaataataactgcacaaaacatgaaccactgatgcattctacatgattaaaatgtttg |
7664938 |
T |
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