View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21472_low_13 (Length: 316)

Name: NF21472_low_13
Description: NF21472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21472_low_13
NF21472_low_13
[»] chr4 (1 HSPs)
chr4 (1-298)||(55300511-55300809)
[»] chr2 (3 HSPs)
chr2 (59-131)||(36616852-36616924)
chr2 (59-131)||(36650606-36650678)
chr2 (63-113)||(18959079-18959129)
[»] chr7 (3 HSPs)
chr7 (72-131)||(45601653-45601712)
chr7 (73-131)||(36101823-36101881)
chr7 (72-113)||(1569193-1569234)
[»] chr3 (3 HSPs)
chr3 (63-131)||(54365021-54365089)
chr3 (72-131)||(29601069-29601128)
chr3 (63-131)||(40991599-40991667)
[»] chr1 (2 HSPs)
chr1 (72-131)||(6084152-6084211)
chr1 (63-131)||(28511847-28511915)
[»] chr8 (2 HSPs)
chr8 (63-113)||(17491718-17491768)
chr8 (63-131)||(35914647-35914715)
[»] chr6 (2 HSPs)
chr6 (76-134)||(5096015-5096073)
chr6 (70-131)||(31818706-31818767)
[»] chr5 (1 HSPs)
chr5 (72-113)||(35615460-35615501)


Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 55300511 - 55300809
Alignment:
Q  1 atccaatcataacaatggtaatgctttgtaatgcaactgtacataagccatcaacctataataaagacgtggagattaatgagttggttcaaaatatact 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  55300511 atccaaccataacaatggtaatgctttgtaatgcaactgtacataagccatcaacctataataaagacgtggagattaatgagttggttcaaaatatgtt 55300610  T
Q  101 ttatgatagaacactttgaagtaatttgatctatttaatcaaatctatttaatgggataaagctcgtttgttgttgttttatttttgaaggaggcttgac 200  Q
    ||||||||||||| ||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |    
T  55300611 ttatgatagaacattttgaagtaatttgatccatttaattaaatctatttagtgggataaagctcgtttgttgttgttttatttttgaaggaggc-tggc 55300709  T
Q  201 tgttgttgttgtattaatgaattaatggatgattttaatccactcgacattttgtcaccataatccgatccttatatatata--ttttggcgaaatcatt 298  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  55300710 tgttgttgttgtattaatgaattaatggatgactttaatccactcgacattttgtcaccataatccgatccttatatatatattttttggcgaaatcatt 55300809  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 131
Target Start/End: Original strand, 36616852 - 36616924
Alignment:
Q  59 taataaagacgtggagattaatgagttggttcaaaatatactttatgatagaacactttgaagtaatttgatc 131  Q
    |||||||||  | |||||||||||||| | |||||||||| |||||||||||||||| | | |||||||||||    
T  36616852 taataaagatctagagattaatgagttagatcaaaatatagtttatgatagaacactataatgtaatttgatc 36616924  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 131
Target Start/End: Original strand, 36650606 - 36650678
Alignment:
Q  59 taataaagacgtggagattaatgagttggttcaaaatatactttatgatagaacactttgaagtaatttgatc 131  Q
    |||||||||  | |||||||||||||| | |||||||||| |||||||||||||||| | | |||||||||||    
T  36650606 taataaagatctagagattaatgagttagatcaaaatatagtttatgatagaacactataacgtaatttgatc 36650678  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 18959079 - 18959129
Alignment:
Q  63 aaagacgtggagattaatgagttggttcaaaatatactttatgatagaaca 113  Q
    |||||| |||||||||||||||||| |||||||||  | ||||||||||||    
T  18959079 aaagacttggagattaatgagttggatcaaaatatggtctatgatagaaca 18959129  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 45601653 - 45601712
Alignment:
Q  72 gagattaatgagttggttcaaaatatactttatgatagaacactttgaagtaatttgatc 131  Q
    |||||||||||||||| |||||||||  |||||||||||||||| ||  |||||||||||    
T  45601653 gagattaatgagttggatcaaaatatgatttatgatagaacactatggtgtaatttgatc 45601712  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 36101881 - 36101823
Alignment:
Q  73 agattaatgagttggttcaaaatatactttatgatagaacactttgaagtaatttgatc 131  Q
    ||||||||||||||| |||||||||  |||||||||||||| | ||| |||||||||||    
T  36101881 agattaatgagttggatcaaaatatggtttatgatagaacattatgacgtaatttgatc 36101823  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 1569193 - 1569234
Alignment:
Q  72 gagattaatgagttggttcaaaatatactttatgatagaaca 113  Q
    |||||||||||||||| |||||||||  ||||||||||||||    
T  1569193 gagattaatgagttggatcaaaatatggtttatgatagaaca 1569234  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 54365089 - 54365021
Alignment:
Q  63 aaagacgtggagattaatgagttggttcaaaatatactttatgatagaacactttgaagtaatttgatc 131  Q
    |||||| |||||||||||| ||| |  ||||||||  |||||||||||||||| ||| |||||||||||    
T  54365089 aaagacttggagattaatgtgttagaccaaaatatggtttatgatagaacactatgacgtaatttgatc 54365021  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 29601069 - 29601128
Alignment:
Q  72 gagattaatgagttggttcaaaatatactttatgatagaacactttgaagtaatttgatc 131  Q
    |||||||||||||||| |  ||||||| |||||||||||||| | ||| |||||||||||    
T  29601069 gagattaatgagttggattcaaatatagtttatgatagaacattatgatgtaatttgatc 29601128  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 40991599 - 40991667
Alignment:
Q  63 aaagacgtggagattaatgagttggttcaaaatatactttatgatagaacactttgaagtaatttgatc 131  Q
    |||||| || |||||||||||||||  ||||||||  |||||||||||||| | ||  |||||||||||    
T  40991599 aaagacttgaagattaatgagttggaccaaaatatggtttatgatagaacattatggtgtaatttgatc 40991667  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 6084152 - 6084211
Alignment:
Q  72 gagattaatgagttggttcaaaatatactttatgatagaacactttgaagtaatttgatc 131  Q
    |||||||||||||||| |||||||||  |||||||||||||| | ||  |||||||||||    
T  6084152 gagattaatgagttggatcaaaatatggtttatgatagaacaatatggcgtaatttgatc 6084211  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 28511915 - 28511847
Alignment:
Q  63 aaagacgtggagattaatgagttggttcaaaatatactttatgatagaacactttgaagtaatttgatc 131  Q
    |||||| ||||||||||||||||||  ||||| ||  |||||||||||||| | ||  |||||||||||    
T  28511915 aaagacttggagattaatgagttggaccaaaacatggtttatgatagaacattatggcgtaatttgatc 28511847  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 17491768 - 17491718
Alignment:
Q  63 aaagacgtggagattaatgagttggttcaaaatatactttatgatagaaca 113  Q
    |||||| ||||||||||||||||||  ||||||||  ||||||||||||||    
T  17491768 aaagacttggagattaatgagttggaccaaaatatggtttatgatagaaca 17491718  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 35914715 - 35914647
Alignment:
Q  63 aaagacgtggagattaatgagttggttcaaaatatactttatgatagaacactttgaagtaatttgatc 131  Q
    |||||| || |||||||||||||||  ||||||||  |||||||||||||| | ||  |||||||||||    
T  35914715 aaagacttgaagattaatgagttggaccaaaatatggtttatgatagaacattatggcgtaatttgatc 35914647  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 5096015 - 5096073
Alignment:
Q  76 ttaatgagttggttcaaaatatactttatgatagaacactttgaagtaatttgatctat 134  Q
    |||||||||||| |||||||||  |||||||||||||| | ||  ||||||||||||||    
T  5096015 ttaatgagttggatcaaaatatggtttatgatagaacattatggcgtaatttgatctat 5096073  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 31818706 - 31818767
Alignment:
Q  70 tggagattaatgagttggttcaaaatatactttatgatagaacactttgaagtaatttgatc 131  Q
    |||||||||||||||||| ||||| |||  |||||||||||||| | ||  |||||||||||    
T  31818706 tggagattaatgagttggatcaaagtatggtttatgatagaacattatgtcgtaatttgatc 31818767  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 35615460 - 35615501
Alignment:
Q  72 gagattaatgagttggttcaaaatatactttatgatagaaca 113  Q
    |||||||||||||||| | |||||||| ||||||||||||||    
T  35615460 gagattaatgagttggataaaaatatagtttatgatagaaca 35615501  T

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