View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21472_low_2 (Length: 611)
Name: NF21472_low_2
Description: NF21472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21472_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 130 - 545
Target Start/End: Complemental strand, 31244603 - 31244188
Alignment:
| Q |
130 |
tttgtatccttcttcatgctcccgaaaggcttgttcataatcttcgctttgctttcgtacctcggatggactcacatcatagaaaataggtagaacagtt |
229 |
Q |
| |
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|||| ||| ||||||||| |||| |||||||| |||||||||| ||||||||||||| ||||| |||||| ||||||||||||||||||||||||| || |
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| T |
31244603 |
tttgaatctttcttcatgatccctaaaggctttttcataatctccgctttgctttcgcacctcagatggatccacatcatagaaaataggtagaacaatt |
31244504 |
T |
|
| Q |
230 |
tgtccttgtacttcaatgcaatcagcaatttttgcgagttcccgcaagcaccatgtggaagaagcatagtttcttgaaaagataacaatcagaatacgag |
329 |
Q |
| |
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|||||| |||||||||||| |||||||| ||| | |||||| ||||||||| || |||||||||||||| ||||||||||||||||||| |||||| | |
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| T |
31244503 |
tgtcctgttacttcaatgcattcagcaatctttactagttccttcaagcaccacgttgaagaagcatagttccttgaaaagataacaatcaaaatacggg |
31244404 |
T |
|
| Q |
330 |
aaccttcaatagcttgtagaagctcagatgatatattttcacctttattgagatttgtatcatccctgaaggcaacaattccatttttatgaaaagcgcc |
429 |
Q |
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| |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||| || |||||||| | || ||| |
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| T |
31244403 |
atccttcaatagcttgtagaagctcagatgatatattttcccctttcttgagctttgtatcatccctgaaggtaacaatgccttttttatggagagtgcc |
31244304 |
T |
|
| Q |
430 |
aaaaagataatcggtaaaattgttgcgtgtgtcttcgccgcgaaagctcacaaacacatcatatttccatttcatcttaggtgaagagacactttggatg |
529 |
Q |
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|||||| | ||| || ||||||||||||||||| | || | ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
31244303 |
aaaaaggtgatcagtgaaattgttgcgtgtgtcgccacctctaaagctcacaaacacatcatatttccatttcatcttaggtgaagagatacttcggatg |
31244204 |
T |
|
| Q |
530 |
ctactactagccattg |
545 |
Q |
| |
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||| ||| |||||||| |
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| T |
31244203 |
ctattacaagccattg |
31244188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 367 - 492
Target Start/End: Original strand, 31160040 - 31160165
Alignment:
| Q |
367 |
ttcacctttattgagatttgtatcatccctgaaggcaacaattccatttttatgaaaagcgccaaaaagataatcggtaaaattgttgcgtgtgtcttcg |
466 |
Q |
| |
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||||||||| || || || | |||||||||||| ||||| || || ||| | |||| || ||||||||| ||||| |||||||||| ||||||||| | |
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| T |
31160040 |
ttcacctttcttcaggttagaatcatccctgaatgcaacgatgccttttctttgaagggcagcaaaaagatgatcggcaaaattgttgtgtgtgtcttgg |
31160139 |
T |
|
| Q |
467 |
ccgcgaaagctcacaaacacatcata |
492 |
Q |
| |
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|| | |||||||||||| || ||||| |
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| T |
31160140 |
cctctaaagctcacaaaaacgtcata |
31160165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 130 - 554
Target Start/End: Complemental strand, 13608624 - 13608198
Alignment:
| Q |
130 |
tttgtatccttcttcatgctcccgaaaggcttgttcataatcttcgctttgctttcgtacctcggatggactcacatcatagaaaataggtagaacagtt |
229 |
Q |
| |
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|||| ||| ||||||||||| ||||||||| |||||||||| ||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| |
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| T |
13608624 |
tttgaatctttcttcatgcttttgaaaggctttttcataatctccgctttgctttcgtaccgcagatggactcgcatcatagaaaataggtagaacagtt |
13608525 |
T |
|
| Q |
230 |
tgtccttgtacttcaatgcaatcagcaatttttgcgagttcccgcaagcaccatgtggaagaagcatagtttcttgaaaagataacaatcagaatacgag |
329 |
Q |
| |
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|||||| |||||||| | | |||||||||||||| ||||| | |||||||||||||||||||||||||||||||| ||||||||||||| |||| | | |
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|
| T |
13608524 |
tgtcctgatacttcaaagtattcagcaatttttgccagttcttgtaagcaccatgtggaagaagcatagtttcttgagaagataacaatcaaaatatggg |
13608425 |
T |
|
| Q |
330 |
aaccttcaatagcttgtagaagctcagatgatatattttcacctttattgagatttgtatcatccctgaaggcaacaattccatttttatgaaaagcgcc |
429 |
Q |
| |
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| |||||||| |||||| ||||| |||||||||| ||| ||||| || || ||||||||||| ||||| |||||||| |||||||||| | |||||| |
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| T |
13608424 |
atccttcaatggcttgttcaagcttggatgatatatgttcccctttttttaggtttgtatcatctctgaatgcaacaatgtcatttttatg-agagcgcc |
13608326 |
T |
|
| Q |
430 |
aaaaagataatcggtaaaattgttgcgtgtgtcttcgccgcgaaagctcacaaacacatcatatttccatttca---tcttaggtgaagagacactttgg |
526 |
Q |
| |
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|||||||| ||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||| || ||| |||||||||| ||||| |
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| T |
13608325 |
aaaaagatgatcagtgaaattgttgcgcgtgtcttcgccacggaagctcacaaacacatcatatttccatttcatcctcctagatgaagagacagtttgg |
13608226 |
T |
|
| Q |
527 |
atgctactactagccattgaaattgtaa |
554 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
13608225 |
atgctactactagccattgaaattgtaa |
13608198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 130 - 552
Target Start/End: Original strand, 6473024 - 6473446
Alignment:
| Q |
130 |
tttgtatccttcttcatgctcccgaaaggcttgttcataatcttcgctttgctttcgtacctcggatggactcacatcatagaaaataggtagaacagtt |
229 |
Q |
| |
|
|||| ||| |||| ||||||| |||||| || |||||||||| || |||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6473024 |
tttgaatctttctccatgctcaagaaagggtttttcataatctccggtttgttttcgtacctcagatggactcacatcatagaaaataggtagaacagtt |
6473123 |
T |
|
| Q |
230 |
tgtccttgtacttcaatgcaatcagcaatttttgcgagttcccgcaagcaccatgtggaagaagcatagtttcttgaaaagataacaatcagaatacgag |
329 |
Q |
| |
|
||||||||||| | |||||||||||||| ||| | | ||| ||||||||||||||||||||||||||||| |||| || || ||||||| ||| ||| |
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| T |
6473124 |
tgtccttgtacatggatgcaatcagcaatatttaccaattcttgcaagcaccatgtggaagaagcatagttttttgagaaaattacaatcaagatatgag |
6473223 |
T |
|
| Q |
330 |
aaccttcaatagcttgtagaagctcagatgatatattttcacctttattgagatttgtatcatccctgaaggcaacaattccatttttatgaaaagcgcc |
429 |
Q |
| |
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| ||| ||||||||||| |||||||||||||| ||| | ||||| || || ||| |||||||||||||| ||||||| | ||||||||||| ||| || |
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| T |
6473224 |
attcttttatagcttgtaggagctcagatgatatgtttccccctttttttaggtttatatcatccctgaagacaacaatgcgatttttatgaagagcacc |
6473323 |
T |
|
| Q |
430 |
aaaaagataatcggtaaaattgttgcgtgtgtcttcgccgcgaaagctcacaaacacatcatatttccatttcatcttaggtgaagagacactttggatg |
529 |
Q |
| |
|
|||||||| ||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| |
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| T |
6473324 |
aaaaagatgatcagtgaaattgttgcgcgtgtcttcgcctcgaaagctcacaaacacatcatatttccatttcctcctatttgaagagacactttggatg |
6473423 |
T |
|
| Q |
530 |
ctactactagccattgaaattgt |
552 |
Q |
| |
|
||||||| || |||| ||||||| |
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|
| T |
6473424 |
ctactacgagtcattcaaattgt |
6473446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 17599750 - 17599843
Alignment:
| Q |
142 |
ttcatgctcccgaaaggcttgttcataatcttcgctttgctttcgtacctcggatggactcacatcatagaaaataggtagaacagtttgtcct |
235 |
Q |
| |
|
|||||||| | |||| |||| |||||||| | || ||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||||| |
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| T |
17599750 |
ttcatgcttctgaaaagctttttcataatttccgtttttctttcgtacctcagatggactcccgtcatagaaaataggtagaacagtttgtcct |
17599843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 509 - 546
Target Start/End: Original strand, 17599891 - 17599928
Alignment:
| Q |
509 |
ggtgaagagacactttggatgctactactagccattga |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17599891 |
ggtgaagagacactttggatgctactactagccattga |
17599928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 142 - 246
Target Start/End: Complemental strand, 14724100 - 14723996
Alignment:
| Q |
142 |
ttcatgctcccgaaaggcttgttcataatcttcgctttgctttcgtacctcggatggactcacatcatagaaaataggtagaacagtttgtccttgtact |
241 |
Q |
| |
|
|||||||| | |||| |||| |||||||| | || ||| |||||||||||| ||||||||| | ||||||||||||||||||||| |||||||| |||| |
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|
| T |
14724100 |
ttcatgcttctgaaaagctttttcataatttccgtttttctttcgtacctcagatggactcccgtcatagaaaataggtagaacaatttgtcctgatact |
14724001 |
T |
|
| Q |
242 |
tcaat |
246 |
Q |
| |
|
||||| |
|
|
| T |
14724000 |
tcaat |
14723996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 509 - 546
Target Start/End: Complemental strand, 14723959 - 14723922
Alignment:
| Q |
509 |
ggtgaagagacactttggatgctactactagccattga |
546 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14723959 |
ggtgaagagacactttggatgctactattagccattga |
14723922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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