View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21472_low_3 (Length: 552)
Name: NF21472_low_3
Description: NF21472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21472_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 24188964 - 24188426
Alignment:
| Q |
1 |
cggtgacgtctccagcaacattgggagtaaagagacgaaaccaaacgttattttcggcgttaacggtaacgtctttggtggaaacgccgttaacaggagt |
100 |
Q |
| |
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||||||| ||||| |||||| | |||||||||||||| ||||||| ||| ||||||| ||||||||| |||||||| |||||||||||||||| ||||| |
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| T |
24188964 |
cggtgacttctccggcaacagttggagtaaagagacggaaccaaaggttgttttcggagttaacggtgacgtctttagtggaaacgccgttaatcggagt |
24188865 |
T |
|
| Q |
101 |
ggcgttaggtgaggatttgagatcgaagaagttaaagagacggcggttgacggtaccgttagctcgacatgaagcgtccgttaaaactgtaagaagtgaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||||||||| ||||||||||||||||||||||||| |
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| T |
24188864 |
ggcgttaggtgaggatttgagatcgaagaagttaaagagacggcgattgacggtgccgtttgcgcgacatgaagagtccgttaaaactgtaagaagtgaa |
24188765 |
T |
|
| Q |
201 |
attgtagcgcggaccttacaaggaagaacaggtttgggtttatttgtggacattgaaattttgggtttcttgatttagctaaacttagaagatacgtaat |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24188764 |
attgtagcgcggaccttccaaggaagaacaggtttgggtttatttgtggacattgaaattttgggtttcttgatttagctaaacttagaagatacgtaat |
24188665 |
T |
|
| Q |
301 |
aaat-aaccatgctttcaaaaataataaataaactatagaagataagatgatggatattggataccttatgattttggggtaggtagacgttgtgggttt |
399 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24188664 |
aaataaaccatgctttcaaaaataataaataaattatagaagataagatgatggatattggataccttatgattttggggtaggtagacgttgtgggttt |
24188565 |
T |
|
| Q |
400 |
gactaagtgcgtgtt----gtttatttggctgc--nnnnnnnnnnnnnngaaatgaagattataggtaattggtgtttatgtggttatagtttgatgtta |
493 |
Q |
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||||||||||||||| ||| ||||||| || ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
24188564 |
gactaagtgcgtgttgatcgttaatttggcagcaaaaaaaaaagaaaaagaaatgaagat--taggtaattggtgtttatgtggttatattttgatgtta |
24188467 |
T |
|
| Q |
494 |
ttcactcagaggaggaaagaaaattcaggggacaacctcat |
534 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
24188466 |
ttcactcagaggaggaaagaaaattcaggggacaacctcat |
24188426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 24179158 - 24178803
Alignment:
| Q |
1 |
cggtgacgtctccagcaacattgggagtaaagagacgaaaccaaacgttattttcggcgttaacggtaacgtctttggtggaaacgccgttaacaggagt |
100 |
Q |
| |
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||||||| ||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24179158 |
cggtgacttctccggcaacagtgggggtaaagagacgaaaccaaacgttattttcggcgttaacggtaacgtctttggtggaaacgccgttaacaggagt |
24179059 |
T |
|
| Q |
101 |
ggcgttaggtgaggatttgagatcgaagaagttaaagagacggcggttgacggtaccgttagctcgacatgaagcgtccgttaaaactgtaagaagtgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24179058 |
ggcgttaggtgaggatttgagatcgaagaagttaaagagacggcggttgacggtaccgttagctcgacatgaagcgtccgttaaaactgtaagaagtgaa |
24178959 |
T |
|
| Q |
201 |
attgtagcgcggaccttacaaggaagaacaggtttgggtttatttgtggacattgaaattttgggtttcttgatttagctaaacttagaagatac---gt |
297 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||| ||| | |||||||||||||||||||| |||||||||||||| ||||||||||| || |
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| T |
24178958 |
attgtagcgcggaccttccaaggaagaagaggtttgggttggtttttagacattgaaattttgggttttttgatttagctaaaattagaagatacatagt |
24178859 |
T |
|
| Q |
298 |
aataaat-aaccatgctttcaaa-aataataaataaactatagaagataagatgat |
351 |
Q |
| |
|
||||||| |||||| |||||||| |||||||||||| | |||||||||| |||||| |
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| T |
24178858 |
aataaataaaccatcctttcaaagaataataaataagccatagaagataggatgat |
24178803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 22 - 208
Target Start/End: Complemental strand, 24151862 - 24151676
Alignment:
| Q |
22 |
tgggagtaaagagacgaaaccaaacgttattttcggcgttaacggtaacgtctttggtggaaacgccgttaacaggagtggcgttaggtgaggatttgag |
121 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||| ||||| |
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| T |
24151862 |
tgggagtgaagagacgaaaccaaacgttattttcggtgttaacggtaatgtctttggtggaaacgccgttaacgggagtggagttaggtgaggcattgag |
24151763 |
T |
|
| Q |
122 |
atcgaagaagttaaagagacggcggttgacggtaccgttagctcgacatgaagcgtccgttaaaactgtaagaagtgaaattgtagc |
208 |
Q |
| |
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| T |
24151762 |
actgaagaagttaaagagacggcggttgacggtgccgttagagcgagaagaagcgtcgaataaaagtgaaagaagtgaaatggtagc |
24151676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 24168707 - 24168476
Alignment:
| Q |
16 |
caacattgggagtaaagagacgaaaccaaacgttattttcggcgttaacggtaacgtctttggtggaaacgccgttaacaggagtggcgttaggtgagga |
115 |
Q |
| |
|
||||| |||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||||| ||||||| |||||||| |||||||| ||||| ||||| |
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| T |
24168707 |
caacagtgggtgtaaagagacggaaccaaacgttattttcggagttaacggtaatgtctttgatggaaacaccgttaacgggagtggcattaggcgagga |
24168608 |
T |
|
| Q |
116 |
tttgagatcgaagaagttaaagagacggcggttgacggtaccgttagctcgacatgaagcgtccgttaaaactgtaagaagtgaaattgtagcgcggacc |
215 |
Q |
| |
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|||| | |||||||||||||||||||||||||| || ||||||| ||||| ||||||| ||||||| || |||||||||||| |||||||| | |
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| T |
24168607 |
tttgcggatgaagaagttaaagagacggcggttgaatgtgccgttagagcgacaacaagcgtcggttaaaaatgaaagaagtgaaatggtagcgcgaggc |
24168508 |
T |
|
| Q |
216 |
ttacaaggaagaacaggtttgggtttatttgt |
247 |
Q |
| |
|
|| |||| ||||| |||||||||||| ||||| |
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| T |
24168507 |
ttccaagaaagaagaggtttgggtttgtttgt |
24168476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 30 - 162
Target Start/End: Complemental strand, 24112575 - 24112443
Alignment:
| Q |
30 |
aagagacgaaaccaaacgttattttcggcgttaacggtaacgtctttggtggaaacgccgttaacaggagtggcgttaggtgaggatttgagatcgaaga |
129 |
Q |
| |
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|||||||| ||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| || |||||| |||| |||| |
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| T |
24112575 |
aagagacggaaccaaacgttatcttctgcgttaacgataacgtctttggtggaaacgccgttaacagggatggcgttaggggaagatttgcgatctaaga |
24112476 |
T |
|
| Q |
130 |
agttaaagagacggcggttgacggtaccgttag |
162 |
Q |
| |
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| |||| | ||||||||| ||||| ||||||| |
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|
| T |
24112475 |
aattaagaaaacggcggttaacggtgccgttag |
24112443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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