View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21473_high_1 (Length: 284)
Name: NF21473_high_1
Description: NF21473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21473_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 44 - 270
Target Start/End: Original strand, 29621087 - 29621313
Alignment:
| Q |
44 |
tacatcattattaaatactaatagtcaatggagaagtttcaaactttaggggtagacttggtgaaaaaactttataggtagaaacatagcaatcataaga |
143 |
Q |
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| T |
29621087 |
tacatcattattaaatactaatagtcaatggagaagtttcaaactttaggggtagacttggtgaaaaaactttataggtagaaacatagcaatcataaga |
29621186 |
T |
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| Q |
144 |
gtgttggatttgagaacttacaaagccaagaccaagaagatagttaaagttgtgtatttcaacaaggctgaaggaggaactgatgtaccattgtatgaat |
243 |
Q |
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| T |
29621187 |
gtgttggatttgagaacttacaaagccaagaccaagaagatagttaaagttgtgtatttcaacaaggctgaaggaggaactgatgtaccattgtatgaat |
29621286 |
T |
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| Q |
244 |
aaaatagcgatatcaaacccatgcaag |
270 |
Q |
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| T |
29621287 |
aaaatagcgatatcaaacccatgcaag |
29621313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 29620842 - 29620796
Alignment:
| Q |
1 |
aaatggaatatcagcttataagactgaccggatggagtacacgtaca |
47 |
Q |
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| T |
29620842 |
aaatggaatatctgcttataagactgaccggatggagtacatgtaca |
29620796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 113 - 265
Target Start/End: Complemental strand, 1792300 - 1792147
Alignment:
| Q |
113 |
ctttataggtagaaacatagcaatcataagagtgttggatttgagaa-cttacaaagccaagaccaagaagatagttaaagttgtgtatttcaacaaggc |
211 |
Q |
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| T |
1792300 |
ctttatagatagatacaaaacaatgataagagtcttggatttgagaaacttacaaagctatgatgaagaagacagataaagttgtgtatttgaacaaggc |
1792201 |
T |
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| Q |
212 |
tgaaggaggaactgatgtaccattgtatgaataaaatagcgatatcaaacccat |
265 |
Q |
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| T |
1792200 |
tgaaggaggaaccgatgtaccattgtatgagtaaaatatagatatcaaacccat |
1792147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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