View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21473_high_2 (Length: 484)
Name: NF21473_high_2
Description: NF21473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21473_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 365
Target Start/End: Complemental strand, 41333861 - 41333509
Alignment:
| Q |
13 |
aaggtggtgtgatttcattgattaaaccggagatgacgccaacgttggcgccgaggtctttgaagaaactaaggaggtttagagttgtttggtcatagga |
112 |
Q |
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| T |
41333861 |
aaggtggtgtgatttcattgattaaaccggagatgacgccaacgttggcaccgaggtctttgaagaaactaaggaggtttagagttgtttggtcatagga |
41333762 |
T |
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| Q |
113 |
taaagaggttttgatttggtttgagtatagaccaaacatgtatgttgcacctgctacagacatgattaatgatgatgcaaataacatgaaccaacgacct |
212 |
Q |
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| T |
41333761 |
taaagaggttttgatttggtttgagtatagaccaaacatgtatgttgcacctgctacagacatgattaatgatgatgcaaataacatgaaccaacgacct |
41333662 |
T |
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| Q |
213 |
gtgagaagttgatatgtgaaggtttttgttcctttccaactattgaggacaccattggtggtgtgatctgtagccaccattttgctactatgttctgttt |
312 |
Q |
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| T |
41333661 |
gtgagaagttgatatgtgaaggtttttgttcctttccaactattgaggacaccattggtggtgtgatctgtagccaccattttgctactatgttctgttt |
41333562 |
T |
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| Q |
313 |
ctgacactttgtggatcaatgattcaatgggatgatgctatatatgaaggaca |
365 |
Q |
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| T |
41333561 |
ctgacactttgtggatcagtgattcaatgggatgatactatatatgaaggaca |
41333509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 50406793 - 50406682
Alignment:
| Q |
13 |
aaggtggtgtgatttcattgattaaaccggagatgacgccaacgttggcgccgaggtctttgaagaaactaaggaggtttagagttgtttggtcatagga |
112 |
Q |
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| T |
50406793 |
aaggtggtgtgatttcattgattaagccagagaaaacaccaaggttgccacctaagtctttgaagaaactaaggaggttaagagttgtttggtcataggc |
50406694 |
T |
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| Q |
113 |
taaagaggtttt |
124 |
Q |
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| T |
50406693 |
taaggatgtttt |
50406682 |
T |
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