View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21473_high_3 (Length: 462)
Name: NF21473_high_3
Description: NF21473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21473_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 6e-78; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 33761881 - 33762028
Alignment:
| Q |
20 |
gttcattacctcaagaaaaaagcagcttcagctcctttaccagtagccatcatagctgaagttgatctctacaaatttgatccatgggagctaccaggta |
119 |
Q |
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| T |
33761881 |
gttcattacctcaagaaaaaagcagcttcagctcctttaccagtagccatcatagctgaagttgatctctacaaatttgatccatgggagctaccaggta |
33761980 |
T |
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| Q |
120 |
cttccaaagattacatattttcaaactttacgttcaaattcaaaatag |
167 |
Q |
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| T |
33761981 |
cttccaaagattacatattttcaaactttacgttcaaattcaaaatag |
33762028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 386 - 462
Target Start/End: Original strand, 33762241 - 33762317
Alignment:
| Q |
386 |
tagctaaggcaacgtttggagagcaagagtggtatttctttagtccaagggacaggaagtatccgaatggagctagg |
462 |
Q |
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| T |
33762241 |
tagctaaggcaacgtttggagagcaagagtggtatttctttagtccaagggacaggaagtatccgaatggagctagg |
33762317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 196 - 269
Target Start/End: Original strand, 33762057 - 33762131
Alignment:
| Q |
196 |
atctgtccatctatctatctattctgagaaaagtcttcttctattcagatgatacgtgttagaa-ttcacacata |
269 |
Q |
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| T |
33762057 |
atctgtctatctatctatctattctgagaaaagtcttcttctactcagatgatacgtgttagaatttcacacata |
33762131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 32897399 - 32897448
Alignment:
| Q |
70 |
catagctgaagttgatctctacaaatttgatccatgggagctaccaggta |
119 |
Q |
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| T |
32897399 |
catagctgaagttgatctcaacaagtgtgaaccatgggagctaccaggta |
32897448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 455
Target Start/End: Original strand, 33727818 - 33727873
Alignment:
| Q |
400 |
tttggagagcaagagtggtatttctttagtccaagggacaggaagtatccgaatgg |
455 |
Q |
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| T |
33727818 |
tttggggagaaagaatggtatttctttagtccaagagataggaagtatccaaatgg |
33727873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 35772437 - 35772525
Alignment:
| Q |
20 |
gttcattacctcaagaaaaaagcagcttcagctcctttaccagtagccatcatagctgaagttgatctctacaaatttgatccatggga |
108 |
Q |
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| T |
35772437 |
gttcactacctcaaaagaaaagctgcttctgcacctcttccagtagccatcatagcagagattgatctctacaaattcgacccatggga |
35772525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 455
Target Start/End: Original strand, 20701670 - 20701725
Alignment:
| Q |
400 |
tttggagagcaagagtggtatttctttagtccaagggacaggaagtatccgaatgg |
455 |
Q |
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| T |
20701670 |
tttggtgagaaagaatggtatttcttcagtccaagggacaggaaatatccaaatgg |
20701725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 449
Target Start/End: Complemental strand, 40733883 - 40733833
Alignment:
| Q |
399 |
gtttggagagcaagagtggtatttctttagtccaagggacaggaagtatcc |
449 |
Q |
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| T |
40733883 |
gtttggtgaggaagaatggtatttctttactccaagggacagaaagtatcc |
40733833 |
T |
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