View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21473_high_4 (Length: 379)
Name: NF21473_high_4
Description: NF21473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21473_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 42 - 284
Target Start/End: Original strand, 54300928 - 54301172
Alignment:
| Q |
42 |
taataataataatagtaacaacgaattaaaatagttttaattataaattgaaggggaaaaaagggaagaaattgtaaaccctagaaaagagaaaggtcgg |
141 |
Q |
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| T |
54300928 |
taataataataatagtaacaacgaattaaaatagttttaattataaattgaaggggaaaaaagggaagaaattgtaaaccctagaaaagagaaaggtcgg |
54301027 |
T |
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| Q |
142 |
tggtggaaaagagtgagttatttattggagtgagaagtgtgtggggttg--nnnnnnnnnnnnnnnnggtggtgatgataattggaatagaatggtctac |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
54301028 |
tggtggaaaagagtgagttatttattggagtgagaagtgtgtggggttgaaaaaaaataaaaaaaaagctggtgatgataattggaatagaatggtctac |
54301127 |
T |
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| Q |
240 |
acaagacagaatagaagaatacttagtagtatacacaaaacagtg |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54301128 |
acaagacagaatagaagaatacttagtagtatacacaaaacagtg |
54301172 |
T |
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