View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21473_low_3 (Length: 216)
Name: NF21473_low_3
Description: NF21473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21473_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 5e-95; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 37030150 - 37030329
Alignment:
| Q |
22 |
ttagtccaaatactaatcttaggctcaagtccgcgtattgcctcggcgttaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatccc |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37030150 |
ttagtccaaatactaatcttaggctcaagtcctcgtattgcctcggcgttaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatccc |
37030249 |
T |
|
| Q |
122 |
tcacagctgtgtagtcgtttccaagtgcattaagaagtttacttacatacaccccttgagcttgtccaactgtcacaatt |
201 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37030250 |
tcacagctgtgtagtcgtttccaagtgcattaagaagtttacttacatacaccccttgagcttgtccaactgtcacaatt |
37030329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 51823701 - 51823879
Alignment:
| Q |
22 |
ttagtccaaatactaatcttaggctcaagtccgcgtattgcctcggcgttaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatccc |
121 |
Q |
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||||||||||||||||||||||| |||||||| |||| |||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
51823701 |
ttagtccaaatactaatcttaggttcaagtccacgtactgcctcagcattaatcttagccatctcttgaaacatgccaccatttatcatcaagtaatccc |
51823800 |
T |
|
| Q |
122 |
tcacagctgtgtagtcgtttccaagtgcattaagaagtttacttacatacaccccttgagcttgtccaactgtcacaat |
200 |
Q |
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| | ||||||||||||||||||||||||||| |||||| ||||||||||| | |||||||| | ||||| ||||||||| |
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| T |
51823801 |
ttagagctgtgtagtcgtttccaagtgcattgagaagtgtacttacatacgctccttgagcatttccaagtgtcacaat |
51823879 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 31526811 - 31526989
Alignment:
| Q |
22 |
ttagtccaaatactaatcttaggctcaagtccgcgtattgcctcggcgttaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatccc |
121 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31526811 |
ttagtccaaatactaatcttaggttcaagtccacgtaccgcctcagcattaatcttagccatctcttgaaacatgccaccatttatcatcaagtaatccc |
31526910 |
T |
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| Q |
122 |
tcacagctgtgtagtcgtttccaagtgcattaagaagtttacttacatacaccccttgagcttgtccaactgtcacaat |
200 |
Q |
| |
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| | ||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| | |||| ||||||||| |
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| T |
31526911 |
ttagagctgtgtagtcgtttccaagtgcattgagaagtgtacttacatacactccttgagcattcccaagtgtcacaat |
31526989 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 32593590 - 32593412
Alignment:
| Q |
22 |
ttagtccaaatactaatcttaggctcaagtccgcgtattgcctcggcgttaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatccc |
121 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||| |||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32593590 |
ttagtccaaatactaatcttaggttcaagtccatgtactgcctcagcattgatcttagccatctcttgaaacatgccaccatttatcatcaagtaatccc |
32593491 |
T |
|
| Q |
122 |
tcacagctgtgtagtcgtttccaagtgcattaagaagtttacttacatacaccccttgagcttgtccaactgtcacaat |
200 |
Q |
| |
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| | ||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| | |||| ||||||||| |
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|
| T |
32593490 |
ttagagctgtgtagtcgtttccaagtgcattgagaagtgtacttacatacactccttgagcattcccaagtgtcacaat |
32593412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 49187004 - 49187183
Alignment:
| Q |
22 |
ttagtccaaatactaatcttaggctcaagtccgcgtattgcctcggcgttaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatccc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49187004 |
ttagtccaaatactaatcttaggctcaagtccgcgtattgcctcggcattaatcttagcaatctcttgaaacatgtcaccatttatcatcaagtaatccc |
49187103 |
T |
|
| Q |
122 |
tcacagctgtgtagtcgtttccaagtgcattaagaagtttacttacatacaccccttgagcttgtccaactgtcacaatt |
201 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||||||||| |||||||||| |
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| T |
49187104 |
ttacagctgtgtagtcgtttccaagtgcattgagaagtgtacttacatacgctccttgagcttgtccaagtgtcacaatt |
49187183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 49201984 - 49202162
Alignment:
| Q |
22 |
ttagtccaaatactaatcttaggctcaagtccgcgtattgcctcggcgttaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatccc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49201984 |
ttagtccaaatactaatcttaggctcaagtccgcgtactgcctcggcattaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatccc |
49202083 |
T |
|
| Q |
122 |
tcacagctgtgtagtcgtttccaagtgcattaagaagtttacttacatacaccccttgagcttgtccaactgtcacaat |
200 |
Q |
| |
|
| ||||||||||||| ||||||||||||||| |||||| ||||||||||| | |||||||| | |||| ||||||||| |
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| T |
49202084 |
ttacagctgtgtagttgtttccaagtgcattcagaagtgtacttacatacgctccttgagcattcccaagtgtcacaat |
49202162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 49206939 - 49207099
Alignment:
| Q |
22 |
ttagtccaaatactaatcttaggctcaagtccgcgtattgcctcggcgttaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatccc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49206939 |
ttagtccaaatactaatcttaggctcaagtccgcgtaccgcctcggcattaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatccc |
49207038 |
T |
|
| Q |
122 |
tcacagctgtgtagtcgtttccaagtgcattaagaagtttacttacatacaccccttgagc |
182 |
Q |
| |
|
| ||||||||||||| ||||||||||||||| |||||| ||||||||||| | |||||||| |
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| T |
49207039 |
ttacagctgtgtagttgtttccaagtgcattgagaagtgtacttacatacgctccttgagc |
49207099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 49190695 - 49190874
Alignment:
| Q |
22 |
ttagtccaaatactaatcttaggctcaagtccgcgtattgcctcggcgttaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatccc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
49190695 |
ttagtccaaatactaatcttaggctcaagtccgcgtactgcctcagcattaatcttagcgatctcttgaaacatgccaccatttatcatcaagaaatccc |
49190794 |
T |
|
| Q |
122 |
tcacagctgtgtagtcgtttccaagtgcattaagaagtttacttacatacaccccttgagcttgtccaactgtcacaatt |
201 |
Q |
| |
|
| ||||| ||||||| ||||||||||||||| |||||| ||||| ||||||||||||||| | |||| |||||||||| |
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|
| T |
49190795 |
ttacagcagtgtagttgtttccaagtgcattgagaagtgcacttagatacaccccttgagcattcccaagtgtcacaatt |
49190874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 49211513 - 49211691
Alignment:
| Q |
22 |
ttagtccaaatactaatcttaggctcaagtccgcgtattgcctcggcgttaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatccc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49211513 |
ttagtccaaatactaatcttaggctcaagtccgcgtaccgcctcagcattaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatccc |
49211612 |
T |
|
| Q |
122 |
tcacagctgtgtagtcgtttccaagtgcattaagaagtttacttacatacaccccttgagcttgtccaactgtcacaat |
200 |
Q |
| |
|
| || ||||| |||| ||||||||||||||| |||||| ||||||||||| | |||||||| | |||| ||||||||| |
|
|
| T |
49211613 |
ttactgctgtatagttgtttccaagtgcattcagaagtgtacttacatacgctccttgagcattcccaagtgtcacaat |
49211691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 180
Target Start/End: Original strand, 26755982 - 26756140
Alignment:
| Q |
22 |
ttagtccaaatactaatcttaggctcaagtccgcgtattgcctcggcgttaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatccc |
121 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||| || |||||||| ||||| ||| |||||||||||||||||||||||||||| |||| |
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|
| T |
26755982 |
ttagtccaaatactaatcttaggttcaagtccgcgtatagcctcagcattaatcttcgcaatatctcgaaacatgccaccatttatcatcaagtagtccc |
26756081 |
T |
|
| Q |
122 |
tcacagctgtgtagtcgtttccaagtgcattaagaagtttacttacatacaccccttga |
180 |
Q |
| |
|
| |||||||| || || ||||||||| || ||||| |||||||| ||||||||||| |
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|
| T |
26756082 |
ttacagctgtataatcacctccaagtgcgttgagaagggtacttacacacaccccttga |
26756140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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